Wall clock time and date at job start Mon Mar 30 2020 19:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50698 * 119.99670 * 2 1 4 4 C 1.52998 * 109.46909 * 125.27622 * 3 2 1 5 5 C 1.50699 * 109.47230 * 180.02562 * 4 3 2 6 6 O 1.21288 * 120.00246 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00292 * 179.97438 * 5 4 3 8 8 C 1.47021 * 125.64730 * 359.69240 * 7 5 4 9 9 C 1.54336 * 107.26608 * 178.85070 * 8 7 5 10 10 C 1.55160 * 103.01970 * 338.13611 * 9 8 7 11 11 H 1.09001 * 111.00227 * 277.23039 * 10 9 8 12 12 C 1.53001 * 111.00076 * 153.38185 * 10 9 8 13 13 H 1.08992 * 109.47339 * 308.47115 * 12 10 9 14 14 C 1.53004 * 109.46886 * 68.47481 * 12 10 9 15 15 N 1.46502 * 109.46789 * 188.46728 * 12 10 9 16 16 C 1.36943 * 119.99881 * 155.00106 * 15 12 10 17 17 H 1.07997 * 119.99435 * 0.02562 * 16 15 12 18 18 C 1.38808 * 119.99593 * 180.02562 * 16 15 12 19 19 N 1.31620 * 119.99557 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00423 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46972 * 90.00481 * 20 18 16 22 22 H 1.48504 * 109.47162 * 210.00175 * 20 18 16 23 23 H 1.48491 * 109.47049 * 330.00420 * 20 18 16 24 24 C 1.47428 * 125.65278 * 179.97438 * 7 5 4 25 25 H 1.07997 * 120.00274 * 359.72854 * 1 2 3 26 26 H 1.08004 * 119.99553 * 179.72255 * 1 2 3 27 27 H 1.07996 * 119.99666 * 180.27653 * 2 1 3 28 28 H 1.09001 * 109.47462 * 245.27430 * 3 2 1 29 29 H 1.09006 * 109.47243 * 5.27525 * 3 2 1 30 30 H 1.09002 * 109.46715 * 299.99634 * 4 3 2 31 31 H 1.08996 * 109.47262 * 60.00052 * 4 3 2 32 32 H 1.09005 * 109.88192 * 298.39214 * 8 7 5 33 33 H 1.08994 * 109.88496 * 59.55895 * 8 7 5 34 34 H 1.08998 * 110.84942 * 219.66703 * 9 8 7 35 35 H 1.08998 * 110.67042 * 96.52220 * 9 8 7 36 36 H 1.08996 * 109.47533 * 54.74679 * 14 12 10 37 37 H 1.09008 * 109.46908 * 174.74584 * 14 12 10 38 38 H 1.09001 * 109.47021 * 294.74088 * 14 12 10 39 39 H 0.96998 * 119.99788 * 335.00620 * 15 12 10 40 40 H 0.97006 * 120.00487 * 179.97438 * 19 18 16 41 41 H 1.09010 * 110.36633 * 322.93474 * 24 7 5 42 42 H 1.09003 * 110.36361 * 85.13925 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0399 1.3303 1.1776 5 6 3.7929 2.6356 1.1781 6 8 3.5709 3.4642 0.3206 7 7 4.7131 2.8825 2.1313 8 6 5.0753 1.9734 3.2285 9 6 6.1868 2.6635 4.0472 10 6 6.7808 3.6835 3.0400 11 1 7.5091 3.2061 2.3843 12 6 7.4019 4.8763 3.7695 13 1 6.6807 5.2852 4.4770 14 6 8.6524 4.4185 4.5230 15 7 7.7689 5.9072 2.7954 16 6 7.8541 7.2175 3.1844 17 1 7.6511 7.4907 4.2094 18 6 8.2013 8.1943 2.2613 19 7 8.2836 9.4535 2.6353 20 14 8.5530 7.7215 0.4887 21 1 7.2945 7.7776 -0.2975 22 1 9.5405 8.6680 -0.0895 23 1 9.1035 6.3431 0.4440 24 6 5.5192 4.1112 2.2499 25 1 -0.5400 0.9352 0.0044 26 1 -0.5399 -0.9354 -0.0045 27 1 1.8500 -0.9353 -0.0045 28 1 2.6174 1.4049 -0.9334 29 1 1.3589 2.1315 0.0945 30 1 2.4859 1.2305 2.1111 31 1 3.7445 0.5040 1.0831 32 1 4.2062 1.7903 3.8604 33 1 5.4463 1.0322 2.8230 34 1 6.9435 1.9433 4.3583 35 1 5.7658 3.1761 4.9121 36 1 9.3341 3.9255 3.8301 37 1 9.1468 5.2833 4.9656 38 1 8.3670 3.7208 5.3103 39 1 7.9514 5.6617 1.8750 40 1 8.5266 10.1362 1.9904 41 1 5.7968 4.4796 1.2622 42 1 4.9675 4.8753 2.7977 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271469870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:21 Heat of formation + Delta-G solvation = -14.557738 kcal Electronic energy + Delta-G solvation = -20322.610146 eV Core-core repulsion = 17302.993857 eV Total energy + Delta-G solvation = -3019.616288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09070 -38.01223 -35.58867 -35.30569 -32.51660 -31.21237 -30.51064 -28.93837 -28.39104 -24.99933 -23.68290 -22.76126 -21.34644 -20.04234 -19.86297 -19.06907 -17.61939 -16.96527 -16.36737 -15.67907 -15.23199 -14.90671 -14.50956 -14.05749 -13.77523 -13.58849 -13.19018 -12.96393 -12.60093 -12.55837 -12.32898 -12.28287 -12.14123 -11.75533 -11.69539 -11.29376 -11.25905 -11.00051 -10.84233 -10.61819 -10.57789 -10.25550 -9.98169 -9.83217 -9.56764 -9.53835 -8.92407 -8.56313 -7.26644 -5.75429 -3.11155 1.98889 2.68037 3.04616 3.40926 3.44647 3.49574 4.33782 4.60044 4.61962 4.65910 4.74965 4.83585 4.92679 5.05826 5.07953 5.21508 5.30646 5.43684 5.47518 5.56406 5.58341 5.67963 5.73605 5.78563 5.82868 5.94951 5.99218 6.05949 6.19857 6.26256 6.31242 6.35707 6.40125 6.49468 6.50956 6.76252 6.98598 7.58484 7.99936 8.21892 8.43540 9.21725 9.94617 10.13640 11.42909 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022843 B = 0.004313 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.460333 B = 6490.203404 C = 7389.339672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.081 4.081 4 C -0.129 4.129 5 C 0.522 3.478 6 O -0.540 6.540 7 N -0.621 5.621 8 C 0.101 3.899 9 C -0.124 4.124 10 C -0.107 4.107 11 H 0.079 0.921 12 C 0.190 3.810 13 H 0.058 0.942 14 C -0.165 4.165 15 N -0.749 5.749 16 C -0.242 4.242 17 H 0.090 0.910 18 C 0.006 3.994 19 N -0.934 5.934 20 Si 0.881 3.119 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.117 3.883 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.040 0.960 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.077 0.923 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 -22.262 0.858 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C -0.119 4.119 4 C -0.169 4.169 5 C 0.311 3.689 6 O -0.418 6.418 7 N -0.356 5.356 8 C -0.022 4.022 9 C -0.162 4.162 10 C -0.127 4.127 11 H 0.098 0.902 12 C 0.080 3.920 13 H 0.076 0.924 14 C -0.225 4.225 15 N -0.392 5.392 16 C -0.372 4.372 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.582 5.582 20 Si 0.711 3.289 21 H -0.209 1.209 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.005 4.005 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.023 -21.594 0.463 23.811 hybrid contribution 0.417 -0.287 -1.222 1.323 sum -9.606 -21.880 -0.759 23.908 Atomic orbital electron populations 1.23887 0.95990 1.01883 1.01357 1.22981 0.96088 0.98338 0.99735 1.20528 0.97836 0.95371 0.98154 1.21584 0.98769 0.95561 1.01011 1.20369 0.79220 0.89035 0.80321 1.90735 1.65470 1.48402 1.37156 1.48655 1.39413 1.19654 1.27833 1.22053 0.98210 0.93330 0.88608 1.22666 0.96961 0.98466 0.98109 1.22721 0.96088 0.96904 0.96944 0.90238 1.20136 0.94114 0.86722 0.91037 0.92396 1.22415 0.99861 1.00707 0.99475 1.42800 1.84389 1.04201 1.07794 1.19033 1.39673 0.81473 0.97002 0.89191 1.24647 1.01635 0.95156 0.97527 1.69697 1.54844 0.99576 1.34077 0.86604 0.78123 0.77402 0.86742 1.20916 1.21780 1.20381 1.22259 0.90618 0.86091 1.01545 0.88478 0.88549 0.87373 0.90155 0.90647 0.89005 0.89017 0.91522 0.91638 0.89975 0.90156 0.93761 0.92100 0.94085 0.80686 0.93072 0.90448 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 14.32 29.01 0.42 -1.06 16 2 C -0.15 -1.23 9.52 -36.03 -0.34 -1.57 16 3 C -0.08 -0.82 4.95 -27.89 -0.14 -0.95 16 4 C -0.13 -1.25 4.87 -27.88 -0.14 -1.38 16 5 C 0.52 7.51 7.85 -10.99 -0.09 7.43 16 6 O -0.54 -10.22 16.24 5.55 0.09 -10.13 16 7 N -0.62 -8.47 3.33 -170.52 -0.57 -9.04 16 8 C 0.10 0.97 6.49 -3.06 -0.02 0.95 16 9 C -0.12 -1.28 5.78 -24.89 -0.14 -1.42 16 10 C -0.11 -1.53 2.62 -88.48 -0.23 -1.77 16 11 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 12 C 0.19 3.38 2.42 -67.93 -0.16 3.21 16 13 H 0.06 1.07 8.00 -51.93 -0.42 0.66 16 14 C -0.16 -2.66 9.29 37.16 0.35 -2.32 16 15 N -0.75 -17.20 4.56 -53.42 -0.24 -17.44 16 16 C -0.24 -6.72 10.41 -15.06 -0.16 -6.87 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 18 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 19 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 20 Si 0.88 22.56 27.74 -169.99 -4.71 17.85 16 21 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 24 C 0.12 1.91 6.02 -2.54 -0.02 1.89 16 25 H 0.10 0.74 7.84 -52.49 -0.41 0.33 16 26 H 0.10 0.59 8.06 -52.48 -0.42 0.17 16 27 H 0.11 0.72 8.06 -52.49 -0.42 0.29 16 28 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 29 H 0.07 0.85 7.75 -51.93 -0.40 0.44 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.82 7.98 -51.93 -0.41 0.40 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 38 H 0.04 0.53 7.75 -51.93 -0.40 0.13 16 39 H 0.36 8.33 5.66 -40.82 -0.23 8.10 16 40 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 41 H 0.08 1.47 8.04 -51.92 -0.42 1.05 16 42 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -33.41 343.39 -7.61 -41.01 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.35 Total: 5.08 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.77 Total: -3.78 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.04 Total: -55.20 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.41 -7.61 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271469870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.456 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds