Wall clock time and date at job start Mon Mar 30 2020 19:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46725 * 2 1 4 4 C 1.53003 * 109.47118 * 119.99458 * 2 1 3 5 5 C 1.52991 * 109.47105 * 185.00038 * 4 2 1 6 6 N 1.46503 * 109.47040 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99801 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00386 * 359.97438 * 7 6 5 9 9 C 1.50708 * 119.99867 * 179.97438 * 7 6 5 10 10 C 1.52997 * 110.43158 * 302.34738 * 9 7 6 11 11 C 1.51168 * 110.42113 * 64.70969 * 9 7 6 12 12 C 1.30527 * 111.11827 * 135.19922 * 11 9 7 13 13 C 1.51103 * 111.10224 * 0.02639 * 12 11 9 14 14 C 1.54631 * 104.72830 * 343.56558 * 13 12 11 15 15 N 1.46492 * 109.47322 * 239.99749 * 2 1 3 16 16 C 1.36935 * 120.00149 * 84.99967 * 15 2 1 17 17 H 1.08002 * 120.00107 * 0.02562 * 16 15 2 18 18 C 1.38810 * 120.00330 * 180.02562 * 16 15 2 19 19 N 1.31622 * 120.00357 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 119.99970 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47241 * 90.00253 * 20 18 16 22 22 H 1.48496 * 109.47561 * 210.00111 * 20 18 16 23 23 H 1.48505 * 109.47521 * 330.00417 * 20 18 16 24 24 H 1.09004 * 109.47506 * 300.00150 * 1 2 3 25 25 H 1.09000 * 109.47059 * 60.00571 * 1 2 3 26 26 H 1.09006 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46520 * 64.99914 * 4 2 1 28 28 H 1.08999 * 109.47112 * 305.00475 * 4 2 1 29 29 H 1.09010 * 109.47048 * 60.00353 * 5 4 2 30 30 H 1.08999 * 109.47493 * 300.00204 * 5 4 2 31 31 H 0.96993 * 119.99861 * 359.97438 * 6 5 4 32 32 H 1.09007 * 109.47030 * 297.64645 * 10 9 7 33 33 H 1.08994 * 109.47402 * 57.64820 * 10 9 7 34 34 H 1.09002 * 109.46720 * 177.65822 * 10 9 7 35 35 H 1.08005 * 124.43314 * 315.21041 * 11 9 7 36 36 H 1.07998 * 124.44887 * 180.02562 * 12 11 9 37 37 H 1.08999 * 110.38500 * 224.74921 * 13 12 11 38 38 H 1.09004 * 110.38702 * 102.37636 * 13 12 11 39 39 H 1.09002 * 111.03841 * 142.66675 * 14 13 12 40 40 H 1.09002 * 111.03772 * 266.56179 * 14 13 12 41 41 H 0.97006 * 120.00062 * 265.00113 * 15 2 1 42 42 H 0.96993 * 120.00148 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5097 7 6 5.3740 -1.3396 2.7753 8 8 6.1584 -0.7998 2.0241 9 6 5.8764 -2.0500 4.0059 10 6 5.2340 -1.4599 5.2629 11 6 5.5895 -3.5313 3.9139 12 6 6.6274 -4.2348 4.2766 13 6 7.7795 -3.3405 4.6718 14 6 7.4173 -1.9535 4.0922 15 7 2.0184 -0.6906 -1.1961 16 6 2.1492 -0.0076 -2.3757 17 1 1.8927 1.0404 -2.4242 18 6 2.6114 -0.6621 -3.5092 19 7 2.7376 -0.0054 -4.6429 20 14 3.0557 -2.4745 -3.4252 21 1 1.8584 -3.2929 -3.7441 22 1 4.1307 -2.7667 -4.4071 23 1 3.5312 -2.8048 -2.0577 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.7516 -1.7715 1.2057 28 1 1.6053 -0.2616 2.1370 29 1 3.8531 0.4372 1.3574 30 1 3.9994 -1.0727 0.4261 31 1 3.4258 -1.7356 3.1107 32 1 5.5194 -0.4123 5.3592 33 1 4.1494 -1.5355 5.1863 34 1 5.5759 -2.0115 6.1387 35 1 4.6490 -3.9523 3.5902 36 1 6.6586 -5.3142 4.2923 37 1 8.7094 -3.7038 4.2343 38 1 7.8646 -3.2881 5.7572 39 1 7.7220 -1.1550 4.7688 40 1 7.8567 -1.8152 3.1043 41 1 2.2491 -1.6318 -1.1525 42 1 3.0603 -0.4629 -5.4350 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274762653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:41 Heat of formation + Delta-G solvation = -20.722609 kcal Electronic energy + Delta-G solvation = -20415.665309 eV Core-core repulsion = 17395.781691 eV Total energy + Delta-G solvation = -3019.883617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56625 -37.99959 -36.65355 -34.48030 -32.32989 -31.49721 -29.76820 -29.15652 -28.16628 -25.72601 -23.83414 -22.79430 -21.48176 -20.22930 -19.85335 -18.88221 -17.60207 -17.23836 -15.91869 -15.57889 -15.36404 -14.73158 -14.61040 -14.01587 -13.68908 -13.42568 -13.19445 -13.03788 -12.59046 -12.52236 -12.30285 -12.18996 -11.93626 -11.87677 -11.49632 -11.44226 -11.18235 -11.08942 -11.00035 -10.75327 -10.64255 -10.40075 -10.01577 -9.72598 -9.55316 -9.13307 -8.93472 -8.85312 -7.24590 -5.73516 -3.08983 1.91880 2.78632 3.30169 3.40401 3.43085 3.48541 4.22148 4.35527 4.62542 4.73420 4.76946 4.99700 5.06717 5.16105 5.20861 5.30013 5.36054 5.41184 5.50146 5.59265 5.63018 5.64539 5.65511 5.80702 5.91535 5.97119 6.08134 6.10710 6.19004 6.25328 6.28717 6.38997 6.50836 6.57102 6.63742 6.79091 6.98320 7.60961 8.02498 8.34558 8.45530 9.23804 9.96420 10.15562 11.45033 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.004533 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.466045 B = 6176.061768 C = 6832.861823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.180 3.820 3 H 0.058 0.942 4 C -0.135 4.135 5 C 0.119 3.881 6 N -0.728 5.728 7 C 0.521 3.479 8 O -0.534 6.534 9 C -0.060 4.060 10 C -0.131 4.131 11 C -0.158 4.158 12 C -0.153 4.153 13 C -0.102 4.102 14 C -0.108 4.108 15 N -0.748 5.748 16 C -0.242 4.242 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.934 5.934 20 Si 0.882 3.118 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.278 1.278 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.395 0.605 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.360 0.640 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.910 -6.952 23.720 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.174 4.174 5 C -0.003 4.003 6 N -0.379 5.379 7 C 0.306 3.694 8 O -0.411 6.411 9 C -0.063 4.063 10 C -0.188 4.188 11 C -0.176 4.176 12 C -0.171 4.171 13 C -0.139 4.139 14 C -0.146 4.146 15 N -0.391 5.391 16 C -0.372 4.372 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.582 5.582 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.204 1.204 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.229 0.771 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.193 0.807 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.494 -6.345 22.965 24.246 hybrid contribution -0.158 -1.647 0.092 1.658 sum 4.336 -7.992 23.058 24.786 Atomic orbital electron populations 1.22394 0.98612 1.00831 1.00520 1.20124 0.92048 0.95878 0.84986 0.92420 1.22104 0.94043 1.01629 0.99629 1.21459 0.94278 0.97494 0.87105 1.46106 1.07299 1.57048 1.27407 1.20374 0.82377 0.79969 0.86651 1.90714 1.55264 1.45596 1.49483 1.20709 0.97653 0.93848 0.94070 1.21744 1.00530 1.01033 0.95509 1.23066 0.99697 0.93121 1.01747 1.23323 0.95350 0.99350 0.99033 1.21413 0.97736 0.94073 1.00720 1.22508 0.92119 0.96842 1.03093 1.42821 1.79677 1.09424 1.07223 1.19067 1.36947 0.95604 0.85560 0.89167 1.24646 1.01386 0.97377 0.95590 1.69694 1.52750 1.35514 1.00258 0.86579 0.78037 0.87007 0.77077 1.21207 1.21763 1.20387 0.94230 0.92223 0.93655 0.91809 0.91457 0.91448 0.90348 0.77100 0.91745 0.92020 0.91421 0.85422 0.85452 0.90807 0.90545 0.90498 0.89114 0.80718 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 2 C 0.18 3.31 2.89 -67.93 -0.20 3.11 16 3 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 4 C -0.14 -1.94 4.87 -26.73 -0.13 -2.07 16 5 C 0.12 1.92 5.56 -4.04 -0.02 1.90 16 6 N -0.73 -9.52 5.42 -60.29 -0.33 -9.84 16 7 C 0.52 7.65 6.55 -10.98 -0.07 7.58 16 8 O -0.53 -10.36 15.48 5.56 0.09 -10.28 16 9 C -0.06 -0.64 0.74 -155.72 -0.12 -0.75 16 10 C -0.13 -1.05 8.39 37.16 0.31 -0.74 16 11 C -0.16 -1.54 9.37 -35.66 -0.33 -1.87 16 12 C -0.15 -1.34 10.78 -35.70 -0.38 -1.73 16 13 C -0.10 -0.86 6.81 -26.83 -0.18 -1.04 16 14 C -0.11 -1.15 6.01 -25.01 -0.15 -1.30 16 15 N -0.75 -17.44 4.38 -53.43 -0.23 -17.67 16 16 C -0.24 -6.83 10.41 -15.06 -0.16 -6.99 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 19 N -0.93 -29.79 13.97 55.49 0.78 -29.01 16 20 Si 0.88 22.66 27.73 -169.99 -4.71 17.94 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 23 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 30 H 0.08 1.56 7.75 -51.93 -0.40 1.16 16 31 H 0.40 3.85 7.78 -40.82 -0.32 3.53 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.06 0.43 7.45 -51.93 -0.39 0.04 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 40 H 0.09 1.20 6.99 -51.93 -0.36 0.84 16 41 H 0.36 8.34 5.66 -40.82 -0.23 8.11 16 42 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -33.97 340.61 -7.65 -41.62 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.20 Total: 8.32 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.18 Total: -6.21 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.21 Total: -56.53 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.97 -7.65 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274762653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.897 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds