Wall clock time and date at job start Mon Mar 30 2020 19:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46725 * 2 1 4 4 C 1.53003 * 109.47118 * 119.99458 * 2 1 3 5 5 C 1.52991 * 109.47105 * 185.00038 * 4 2 1 6 6 N 1.46503 * 109.47040 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99801 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00386 * 359.97438 * 7 6 5 9 9 C 1.50708 * 119.99867 * 179.97438 * 7 6 5 10 10 C 1.52997 * 110.43158 * 302.34738 * 9 7 6 11 11 C 1.51168 * 110.42113 * 64.70969 * 9 7 6 12 12 C 1.30527 * 111.11827 * 135.19922 * 11 9 7 13 13 C 1.51103 * 111.10224 * 0.02639 * 12 11 9 14 14 C 1.54631 * 104.72830 * 343.56558 * 13 12 11 15 15 N 1.46492 * 109.47322 * 239.99749 * 2 1 3 16 16 C 1.36935 * 120.00149 * 84.99967 * 15 2 1 17 17 H 1.08002 * 120.00107 * 0.02562 * 16 15 2 18 18 C 1.38810 * 120.00330 * 180.02562 * 16 15 2 19 19 N 1.31622 * 120.00357 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 119.99970 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47241 * 90.00253 * 20 18 16 22 22 H 1.48496 * 109.47561 * 210.00111 * 20 18 16 23 23 H 1.48505 * 109.47521 * 330.00417 * 20 18 16 24 24 H 1.09004 * 109.47506 * 300.00150 * 1 2 3 25 25 H 1.09000 * 109.47059 * 60.00571 * 1 2 3 26 26 H 1.09006 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46520 * 64.99914 * 4 2 1 28 28 H 1.08999 * 109.47112 * 305.00475 * 4 2 1 29 29 H 1.09010 * 109.47048 * 60.00353 * 5 4 2 30 30 H 1.08999 * 109.47493 * 300.00204 * 5 4 2 31 31 H 0.96993 * 119.99861 * 359.97438 * 6 5 4 32 32 H 1.09007 * 109.47030 * 297.64645 * 10 9 7 33 33 H 1.08994 * 109.47402 * 57.64820 * 10 9 7 34 34 H 1.09002 * 109.46720 * 177.65822 * 10 9 7 35 35 H 1.08005 * 124.43314 * 315.21041 * 11 9 7 36 36 H 1.07998 * 124.44887 * 180.02562 * 12 11 9 37 37 H 1.08999 * 110.38500 * 224.74921 * 13 12 11 38 38 H 1.09004 * 110.38702 * 102.37636 * 13 12 11 39 39 H 1.09002 * 111.03841 * 142.66675 * 14 13 12 40 40 H 1.09002 * 111.03772 * 266.56179 * 14 13 12 41 41 H 0.97006 * 120.00062 * 265.00113 * 15 2 1 42 42 H 0.96993 * 120.00148 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5097 7 6 5.3740 -1.3396 2.7753 8 8 6.1584 -0.7998 2.0241 9 6 5.8764 -2.0500 4.0059 10 6 5.2340 -1.4599 5.2629 11 6 5.5895 -3.5313 3.9139 12 6 6.6274 -4.2348 4.2766 13 6 7.7795 -3.3405 4.6718 14 6 7.4173 -1.9535 4.0922 15 7 2.0184 -0.6906 -1.1961 16 6 2.1492 -0.0076 -2.3757 17 1 1.8927 1.0404 -2.4242 18 6 2.6114 -0.6621 -3.5092 19 7 2.7376 -0.0054 -4.6429 20 14 3.0557 -2.4745 -3.4252 21 1 1.8584 -3.2929 -3.7441 22 1 4.1307 -2.7667 -4.4071 23 1 3.5312 -2.8048 -2.0577 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.7516 -1.7715 1.2057 28 1 1.6053 -0.2616 2.1370 29 1 3.8531 0.4372 1.3574 30 1 3.9994 -1.0727 0.4261 31 1 3.4258 -1.7356 3.1107 32 1 5.5194 -0.4123 5.3592 33 1 4.1494 -1.5355 5.1863 34 1 5.5759 -2.0115 6.1387 35 1 4.6490 -3.9523 3.5902 36 1 6.6586 -5.3142 4.2923 37 1 8.7094 -3.7038 4.2343 38 1 7.8646 -3.2881 5.7572 39 1 7.7220 -1.1550 4.7688 40 1 7.8567 -1.8152 3.1043 41 1 2.2491 -1.6318 -1.1525 42 1 3.0603 -0.4629 -5.4350 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274762653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:41 Heat of formation + Delta-G solvation = -44.290784 kcal Electronic energy + Delta-G solvation = -20416.687302 eV Core-core repulsion = 17395.781691 eV Total energy + Delta-G solvation = -3020.905610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55774 -39.02426 -38.14678 -35.92940 -34.23703 -32.45792 -31.45351 -30.04900 -29.36925 -26.48406 -25.61419 -24.25735 -22.59704 -21.66502 -20.79748 -19.99482 -19.46196 -18.16383 -17.16547 -16.93911 -16.49836 -16.06997 -15.76529 -15.68937 -15.15321 -14.62614 -14.36516 -14.34555 -13.89485 -13.71523 -13.60207 -13.37783 -13.01638 -12.91584 -12.63079 -12.62095 -12.35872 -12.28972 -12.20247 -12.16487 -12.05482 -11.79947 -11.75656 -11.60771 -11.02357 -10.81960 -10.12578 -9.88557 -9.30657 -8.02856 -5.34410 1.20578 1.33171 1.37597 1.43632 1.68307 2.21284 2.46628 3.29473 3.44518 3.58707 3.61698 3.90187 3.96090 4.01750 4.16004 4.26109 4.31353 4.37994 4.61126 4.63409 4.73460 4.76931 4.78955 4.84134 4.96325 4.97350 4.99941 5.07227 5.14920 5.17510 5.20550 5.30998 5.35334 5.45204 5.53134 5.58247 5.79132 5.91116 6.22098 6.55981 7.09086 7.26097 7.86460 8.03591 9.19339 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.004533 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.466045 B = 6176.061768 C = 6832.861823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.167 3.833 3 H 0.041 0.959 4 C -0.117 4.117 5 C 0.126 3.874 6 N -0.710 5.710 7 C 0.513 3.487 8 O -0.592 6.592 9 C -0.054 4.054 10 C -0.127 4.127 11 C -0.176 4.176 12 C -0.147 4.147 13 C -0.099 4.099 14 C -0.116 4.116 15 N -0.751 5.751 16 C -0.223 4.223 17 H 0.057 0.943 18 C -0.066 4.066 19 N -0.986 5.986 20 Si 0.951 3.049 21 H -0.273 1.273 22 H -0.301 1.301 23 H -0.259 1.259 24 H 0.078 0.922 25 H 0.028 0.972 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.416 0.584 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.363 0.637 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 -9.342 27.405 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.059 0.941 4 C -0.156 4.156 5 C 0.002 3.998 6 N -0.362 5.362 7 C 0.301 3.699 8 O -0.472 6.472 9 C -0.057 4.057 10 C -0.185 4.185 11 C -0.194 4.194 12 C -0.164 4.164 13 C -0.136 4.136 14 C -0.154 4.154 15 N -0.395 5.395 16 C -0.354 4.354 17 H 0.075 0.925 18 C -0.257 4.257 19 N -0.638 5.638 20 Si 0.779 3.221 21 H -0.199 1.199 22 H -0.228 1.228 23 H -0.184 1.184 24 H 0.097 0.903 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.254 0.746 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.196 0.804 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.494 -8.758 26.749 28.362 hybrid contribution 0.145 -0.780 -0.995 1.273 sum 3.639 -9.538 25.754 27.703 Atomic orbital electron populations 1.22241 0.96515 1.01632 1.00976 1.20438 0.93440 0.95232 0.84949 0.94133 1.21959 0.92246 1.02521 0.98833 1.21167 0.95562 0.96282 0.86791 1.45898 1.07426 1.56319 1.26579 1.21253 0.82218 0.79148 0.87302 1.90691 1.56725 1.48104 1.51691 1.20749 0.97495 0.94420 0.93004 1.21771 1.01330 1.00768 0.94592 1.23153 1.00778 0.92207 1.03246 1.23591 0.94758 1.00392 0.97697 1.21441 0.97820 0.92342 1.02005 1.22533 0.92333 0.98911 1.01594 1.42855 1.79941 1.09550 1.07183 1.19050 1.34559 0.94434 0.87379 0.92524 1.25441 1.02643 1.02268 0.95321 1.69877 1.55128 1.37586 1.01170 0.85464 0.77689 0.81338 0.77600 1.19920 1.22800 1.18354 0.90316 0.95271 0.92625 0.90019 0.87212 0.93272 0.94611 0.74634 0.92277 0.90481 0.89470 0.84309 0.83465 0.90486 0.88198 0.89529 0.92675 0.80355 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.49 71.98 0.68 -4.08 16 2 C 0.17 5.94 2.89 44.99 0.13 6.07 16 3 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 4 C -0.12 -2.99 4.87 30.59 0.15 -2.84 16 5 C 0.13 3.96 5.56 86.38 0.48 4.44 16 6 N -0.71 -17.28 5.42 -463.05 -2.51 -19.79 16 7 C 0.51 14.82 6.55 87.66 0.57 15.39 16 8 O -0.59 -23.84 15.48 -3.03 -0.05 -23.88 16 9 C -0.05 -1.05 0.74 -52.97 -0.04 -1.09 16 10 C -0.13 -1.66 8.39 71.98 0.60 -1.06 16 11 C -0.18 -2.92 9.37 26.28 0.25 -2.68 16 12 C -0.15 -2.13 10.78 26.26 0.28 -1.85 16 13 C -0.10 -1.43 6.81 30.53 0.21 -1.22 16 14 C -0.12 -2.37 6.01 31.71 0.19 -2.18 16 15 N -0.75 -34.79 4.38 -322.95 -1.41 -36.20 16 16 C -0.22 -12.94 10.41 84.03 0.87 -12.06 16 17 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 19 N -0.99 -65.25 13.97 21.65 0.30 -64.95 16 20 Si 0.95 47.45 27.73 68.60 1.90 49.36 16 21 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 23 H -0.26 -11.91 6.52 99.48 0.65 -11.26 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.04 1.43 7.75 -2.39 -0.02 1.42 16 31 H 0.42 6.59 7.78 -92.71 -0.72 5.87 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.08 0.76 7.45 -2.39 -0.02 0.75 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.53 7.90 -2.39 -0.02 1.51 16 40 H 0.05 1.53 6.99 -2.39 -0.02 1.51 16 41 H 0.36 16.31 5.66 -92.70 -0.52 15.79 16 42 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -78.75 340.61 2.78 -75.98 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.31 Total: 26.18 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 4.85 Total: -6.69 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -3.62 Total: -120.94 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.90 Total: 49.36 kcal Total: -78.75 2.78 -75.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274762653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.686 kcal (2) G-P(sol) polarization free energy of solvation -78.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds