Wall clock time and date at job start Mon Mar 30 2020 19:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47084 * 2 1 4 4 C 1.52999 * 109.47088 * 120.00121 * 2 1 3 5 5 C 1.53000 * 109.47179 * 185.00283 * 4 2 1 6 6 N 1.46500 * 109.47185 * 180.02562 * 5 4 2 7 7 C 1.34769 * 120.00051 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99933 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00071 * 180.02562 * 7 6 5 10 10 C 1.53003 * 110.34528 * 57.71010 * 9 7 6 11 11 C 1.51099 * 110.38470 * 295.29799 * 9 7 6 12 12 C 1.30532 * 111.10544 * 224.75073 * 11 9 7 13 13 C 1.51105 * 111.10038 * 0.02562 * 12 11 9 14 14 C 1.54632 * 104.72718 * 16.43519 * 13 12 11 15 15 N 1.46500 * 109.47123 * 240.00223 * 2 1 3 16 16 C 1.36933 * 119.99908 * 85.00131 * 15 2 1 17 17 H 1.08000 * 120.00234 * 359.97438 * 16 15 2 18 18 C 1.38814 * 120.00177 * 180.02562 * 16 15 2 19 19 N 1.31618 * 120.00363 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99656 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46955 * 90.00488 * 20 18 16 22 22 H 1.48503 * 109.47081 * 210.00606 * 20 18 16 23 23 H 1.48506 * 109.47206 * 330.00328 * 20 18 16 24 24 H 1.08996 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47004 * 300.00037 * 1 2 3 26 26 H 1.09003 * 109.46956 * 59.99882 * 1 2 3 27 27 H 1.09002 * 109.47261 * 64.99786 * 4 2 1 28 28 H 1.09000 * 109.47229 * 304.99996 * 4 2 1 29 29 H 1.08998 * 109.46932 * 59.99591 * 5 4 2 30 30 H 1.09000 * 109.46806 * 299.99972 * 5 4 2 31 31 H 0.97001 * 119.99632 * 359.97438 * 6 5 4 32 32 H 1.08996 * 109.46739 * 182.29162 * 10 9 7 33 33 H 1.08998 * 109.46819 * 302.28488 * 10 9 7 34 34 H 1.08994 * 109.47062 * 62.29132 * 10 9 7 35 35 H 1.08000 * 124.44620 * 44.77381 * 11 9 7 36 36 H 1.08001 * 124.44896 * 180.02562 * 12 11 9 37 37 H 1.08998 * 110.38545 * 257.62166 * 13 12 11 38 38 H 1.09003 * 110.38022 * 135.24943 * 13 12 11 39 39 H 1.08995 * 111.03420 * 217.32998 * 14 13 12 40 40 H 1.08998 * 111.03825 * 93.39945 * 14 13 12 41 41 H 0.96999 * 119.99726 * 265.00237 * 15 2 1 42 42 H 0.97000 * 119.99962 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0532 -1.3044 2.5096 7 6 5.3740 -1.3398 2.7752 8 8 6.1583 -0.7999 2.0241 9 6 5.8764 -2.0513 4.0051 10 6 5.4343 -3.5160 3.9902 11 6 5.3775 -1.3610 5.2531 12 6 6.3337 -1.2304 6.1321 13 6 7.6298 -1.8112 5.6164 14 6 7.4174 -1.9537 4.0913 15 7 2.0183 -0.6906 -1.1962 16 6 2.1491 -0.0074 -2.3757 17 1 1.8919 1.0404 -2.4243 18 6 2.6113 -0.6618 -3.5093 19 7 2.7366 -0.0053 -4.6432 20 14 3.0556 -2.4743 -3.4255 21 1 1.8582 -3.2926 -3.7444 22 1 4.1307 -2.7664 -4.4074 23 1 3.5311 -2.8047 -2.0579 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.7516 -1.7715 1.2056 28 1 1.6054 -0.2618 2.1370 29 1 3.8531 0.4370 1.3574 30 1 3.9994 -1.0727 0.4260 31 1 3.4258 -1.7359 3.1105 32 1 5.7701 -4.0061 4.9040 33 1 4.3473 -3.5668 3.9290 34 1 5.8708 -4.0184 3.1270 35 1 4.3630 -1.0208 5.3990 36 1 6.2141 -0.7678 7.1007 37 1 7.8146 -2.7865 6.0667 38 1 8.4582 -1.1335 5.8228 39 1 7.8885 -2.8611 3.7138 40 1 7.7844 -1.0747 3.5614 41 1 2.2490 -1.6317 -1.1526 42 1 3.0599 -0.4625 -5.4352 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274762654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:45 Heat of formation + Delta-G solvation = -20.689449 kcal Electronic energy + Delta-G solvation = -20394.276593 eV Core-core repulsion = 17374.394413 eV Total energy + Delta-G solvation = -3019.882179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57370 -38.00613 -36.65411 -34.48029 -32.33076 -31.49619 -29.76963 -29.17103 -28.16628 -25.72140 -23.83629 -22.79491 -21.48337 -20.22578 -19.87538 -18.88140 -17.60965 -17.24626 -15.87994 -15.66432 -15.30209 -14.79743 -14.56915 -14.00846 -13.64870 -13.51841 -13.17533 -12.97655 -12.59987 -12.52185 -12.32510 -12.18918 -11.93857 -11.87338 -11.49489 -11.45661 -11.20031 -11.07530 -11.00096 -10.75738 -10.64163 -10.40092 -10.01727 -9.73043 -9.55405 -9.14862 -8.93591 -8.85325 -7.24704 -5.73547 -3.09025 1.89386 2.78100 3.30608 3.40319 3.42748 3.48346 4.21438 4.34698 4.62412 4.73944 4.75666 4.99867 5.06514 5.16378 5.20182 5.29819 5.35918 5.41511 5.50075 5.58998 5.63794 5.64281 5.65444 5.82441 5.92496 5.97166 6.08015 6.09673 6.16094 6.25558 6.28566 6.38940 6.50599 6.54953 6.63709 6.79063 6.98340 7.60966 8.02471 8.34596 8.45457 9.23748 9.96327 10.15526 11.44988 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.004320 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.727487 B = 6479.356292 C = 7057.915505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.179 3.821 3 H 0.058 0.942 4 C -0.135 4.135 5 C 0.119 3.881 6 N -0.728 5.728 7 C 0.521 3.479 8 O -0.535 6.535 9 C -0.060 4.060 10 C -0.132 4.132 11 C -0.157 4.157 12 C -0.153 4.153 13 C -0.103 4.103 14 C -0.108 4.108 15 N -0.748 5.748 16 C -0.242 4.242 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.278 1.278 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.395 0.605 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.360 0.640 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -6.191 24.192 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.174 4.174 5 C -0.003 4.003 6 N -0.379 5.379 7 C 0.306 3.694 8 O -0.411 6.411 9 C -0.063 4.063 10 C -0.190 4.190 11 C -0.175 4.175 12 C -0.171 4.171 13 C -0.140 4.140 14 C -0.146 4.146 15 N -0.391 5.391 16 C -0.372 4.372 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.582 5.582 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.204 1.204 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.229 0.771 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.193 0.807 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.421 -5.607 23.422 24.486 hybrid contribution -0.174 -1.499 0.187 1.520 sum 4.247 -7.106 23.609 25.018 Atomic orbital electron populations 1.22393 0.98610 1.00838 1.00518 1.20126 0.92049 0.95879 0.84986 0.92424 1.22104 0.94043 1.01632 0.99622 1.21458 0.94278 0.97506 0.87093 1.46105 1.07302 1.57055 1.27397 1.20377 0.82395 0.80136 0.86476 1.90714 1.55301 1.45628 1.49421 1.20702 0.97330 0.96072 0.92177 1.21753 1.01625 0.92753 1.02818 1.23041 0.99603 1.00408 0.94486 1.23323 0.95339 0.99107 0.99285 1.21416 0.96493 1.00777 0.95275 1.22512 0.92322 1.03968 0.95765 1.42821 1.79685 1.09420 1.07224 1.19066 1.36943 0.95610 0.85558 0.89175 1.24651 1.01399 0.97390 0.95582 1.69696 1.52725 1.35538 1.00254 0.86575 0.78039 0.86999 0.77062 1.21200 1.21764 1.20389 0.93645 0.94230 0.92228 0.91791 0.91476 0.91473 0.90327 0.77100 0.91409 0.91998 0.91675 0.85432 0.85467 0.90542 0.90822 0.90476 0.89116 0.80716 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.49 37.16 0.35 -2.38 16 2 C 0.18 3.31 2.89 -67.93 -0.20 3.11 16 3 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 4 C -0.14 -1.94 4.87 -26.73 -0.13 -2.07 16 5 C 0.12 1.92 5.56 -4.04 -0.02 1.90 16 6 N -0.73 -9.52 5.41 -60.30 -0.33 -9.84 16 7 C 0.52 7.65 6.55 -10.99 -0.07 7.58 16 8 O -0.53 -10.37 15.48 5.56 0.09 -10.28 16 9 C -0.06 -0.64 0.74 -155.75 -0.11 -0.75 16 10 C -0.13 -1.15 8.40 37.16 0.31 -0.84 16 11 C -0.16 -1.42 9.37 -35.70 -0.33 -1.76 16 12 C -0.15 -1.24 10.78 -35.70 -0.38 -1.63 16 13 C -0.10 -0.83 6.81 -26.83 -0.18 -1.01 16 14 C -0.11 -1.15 6.01 -25.00 -0.15 -1.30 16 15 N -0.75 -17.42 4.38 -53.42 -0.23 -17.65 16 16 C -0.24 -6.83 10.41 -15.06 -0.16 -6.98 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 19 N -0.93 -29.76 13.97 55.49 0.78 -28.98 16 20 Si 0.88 22.58 27.74 -169.99 -4.71 17.86 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 23 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.08 1.56 7.75 -51.93 -0.40 1.15 16 31 H 0.40 3.85 7.78 -40.82 -0.32 3.53 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.47 7.45 -51.93 -0.39 0.09 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 40 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 41 H 0.36 8.32 5.66 -40.82 -0.23 8.08 16 42 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -33.90 340.60 -7.65 -41.55 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.20 Total: 8.28 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.18 Total: -6.06 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.21 Total: -56.48 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.90 -7.65 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274762654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.859 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds