Wall clock time and date at job start Mon Mar 30 2020 19:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99939 * 4 2 1 6 6 C 1.36938 * 119.99616 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00430 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99364 * 180.02562 * 6 5 4 9 9 N 1.31630 * 119.99727 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00608 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47098 * 89.99633 * 10 8 6 12 12 H 1.48493 * 109.47307 * 210.00122 * 10 8 6 13 13 H 1.48501 * 109.47068 * 330.00181 * 10 8 6 14 14 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 15 15 C 1.34777 * 119.99525 * 84.99977 * 14 2 1 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 2 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 2 18 18 C 1.50703 * 109.47148 * 180.28037 * 17 15 14 19 19 C 1.29437 * 117.96642 * 94.73423 * 18 17 15 20 20 C 1.50062 * 124.08201 * 180.23927 * 19 18 17 21 21 C 1.53028 * 110.19811 * 343.31709 * 20 19 18 22 22 C 1.53392 * 108.43919 * 49.24475 * 21 20 19 23 23 C 1.50066 * 117.95932 * 274.99742 * 18 17 15 24 24 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 25 25 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 26 26 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 28 28 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 29 29 H 0.97000 * 120.00165 * 0.02562 * 5 4 2 30 30 H 0.97000 * 119.99801 * 179.97438 * 9 8 6 31 31 H 0.97000 * 120.00580 * 265.00723 * 14 2 1 32 32 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 33 33 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 34 34 H 1.08004 * 117.96292 * 0.46618 * 19 18 17 35 35 H 1.09004 * 109.48882 * 222.99851 * 20 19 18 36 36 H 1.08993 * 109.18184 * 103.44161 * 20 19 18 37 37 H 1.09001 * 109.64240 * 289.56635 * 21 20 19 38 38 H 1.08998 * 109.81483 * 169.03379 * 21 20 19 39 39 H 1.09000 * 109.64534 * 172.88017 * 22 21 20 40 40 H 1.09006 * 109.64012 * 52.25141 * 22 21 20 41 41 H 1.08999 * 109.36065 * 283.05470 * 23 18 17 42 42 H 1.09005 * 109.36124 * 42.77968 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1837 -1.4387 2.2070 7 1 3.6466 -1.8437 3.0519 8 6 5.5671 -1.5378 2.1517 9 7 6.2243 -2.1269 3.1283 10 14 6.4962 -0.8366 0.6907 11 1 6.8569 0.5774 0.9658 12 1 7.7323 -1.6277 0.4641 13 1 5.6380 -0.9020 -0.5194 14 7 2.0185 -0.6908 -1.1960 15 6 2.1472 -0.0185 -2.3570 16 8 1.8591 1.1584 -2.4116 17 6 2.6554 -0.7275 -3.5859 18 6 2.7114 0.2421 -4.7382 19 6 3.8351 0.8391 -4.9751 20 6 4.0432 1.8318 -6.0811 21 6 2.9123 1.7250 -7.1065 22 6 1.5742 1.7460 -6.3570 23 6 1.4591 0.4598 -5.5360 24 1 -0.3633 0.5140 0.8898 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.7516 -0.1581 2.1370 28 1 1.6053 -1.7197 1.2953 29 1 3.9825 -0.4622 0.4321 30 1 7.1910 -2.1965 3.0894 31 1 2.2491 -1.6319 -1.1524 32 1 3.6539 -1.1197 -3.3923 33 1 1.9842 -1.5494 -3.8349 34 1 4.6765 0.6056 -4.3395 35 1 4.9961 1.6345 -6.5723 36 1 4.0567 2.8376 -5.6616 37 1 3.0072 0.7912 -7.6607 38 1 2.9589 2.5672 -7.7969 39 1 0.7539 1.7983 -7.0730 40 1 1.5400 2.6093 -5.6924 41 1 1.3069 -0.3851 -6.2075 42 1 0.6088 0.5408 -4.8588 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275098670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:52 Heat of formation + Delta-G solvation = -33.479875 kcal Electronic energy + Delta-G solvation = -20512.332645 eV Core-core repulsion = 17491.895832 eV Total energy + Delta-G solvation = -3020.436814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.90554 -38.36003 -36.26291 -33.72231 -32.98366 -31.43768 -30.82713 -30.33743 -27.28911 -25.96334 -23.38458 -22.48818 -21.94130 -20.87429 -20.13146 -17.81848 -17.62052 -16.78041 -16.14149 -15.51812 -15.08207 -14.69179 -14.47752 -14.08601 -13.93445 -13.59148 -13.41470 -12.92543 -12.72210 -12.63005 -12.41238 -12.32738 -12.27656 -12.18345 -11.82362 -11.66631 -11.09973 -10.91692 -10.90610 -10.56986 -10.51848 -10.31411 -10.16101 -9.69451 -9.64583 -8.97797 -8.79353 -8.75831 -7.29792 -5.81782 -3.17902 2.18132 2.86479 3.32319 3.37822 3.41903 3.53008 4.51267 4.54642 4.60421 4.79830 4.96664 5.05398 5.12668 5.18877 5.28867 5.32901 5.38670 5.46959 5.48786 5.50972 5.56435 5.61688 5.71215 5.81545 5.82095 5.85481 5.92331 5.96184 6.04076 6.08489 6.21948 6.29354 6.38634 6.58075 6.62247 6.85016 6.98997 7.77874 7.93803 8.36977 8.47417 9.15783 9.88039 10.07710 11.36456 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.005053 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.605311 B = 5539.539338 C = 6643.901611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 H 0.086 0.914 4 C 0.149 3.851 5 N -0.755 5.755 6 C -0.247 4.247 7 H 0.091 0.909 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.279 1.279 14 N -0.718 5.718 15 C 0.514 3.486 16 O -0.540 6.540 17 C -0.114 4.114 18 C -0.098 4.098 19 C -0.150 4.150 20 C -0.087 4.087 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.077 4.077 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.033 0.967 29 H 0.363 0.637 30 H 0.260 0.740 31 H 0.403 0.597 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 4.056 -19.285 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.104 0.896 4 C 0.021 3.979 5 N -0.402 5.402 6 C -0.377 4.377 7 H 0.109 0.891 8 C -0.189 4.189 9 N -0.580 5.580 10 Si 0.714 3.286 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.205 1.205 14 N -0.370 5.370 15 C 0.300 3.700 16 O -0.418 6.418 17 C -0.154 4.154 18 C -0.099 4.099 19 C -0.168 4.168 20 C -0.124 4.124 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.114 4.114 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.196 0.804 30 H 0.070 0.930 31 H 0.238 0.762 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.368 4.779 -19.075 22.230 hybrid contribution 1.033 -0.103 -0.710 1.258 sum -9.335 4.677 -19.785 22.371 Atomic orbital electron populations 1.22077 0.95259 1.01956 1.02189 1.21284 0.93717 0.97910 0.84623 0.89638 1.20966 0.85451 0.97603 0.93858 1.42708 1.01358 1.71449 1.24638 1.19060 0.89893 1.29611 0.99107 0.89108 1.24661 0.96161 1.00507 0.97586 1.69703 1.07368 1.48399 1.32543 0.86567 0.79750 0.79028 0.83232 1.21070 1.21648 1.20511 1.46109 1.66964 1.14462 1.09462 1.20537 0.77623 0.87415 0.84420 1.90674 1.50159 1.15822 1.85107 1.20887 1.03690 0.98603 0.92175 1.20248 0.95330 0.98311 0.95997 1.21883 0.97669 0.98205 0.99013 1.20392 0.98566 0.98587 0.94836 1.21597 0.94942 1.01706 0.97442 1.21574 0.97066 0.98279 0.98657 1.20319 0.95787 0.97683 0.97626 0.91575 0.92457 0.92472 0.94041 0.94960 0.80439 0.92996 0.76191 0.88415 0.88514 0.88078 0.91302 0.90938 0.91920 0.91939 0.91957 0.91466 0.91325 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 37.16 0.35 -1.69 16 2 C 0.13 2.07 2.73 -67.93 -0.19 1.88 16 3 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 4 C 0.15 2.77 5.82 -4.04 -0.02 2.75 16 5 N -0.76 -17.66 5.24 -59.91 -0.31 -17.98 16 6 C -0.25 -6.91 10.47 -15.06 -0.16 -7.07 16 7 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 8 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 9 N -0.93 -29.14 13.97 55.49 0.78 -28.37 16 10 Si 0.88 22.24 27.74 -169.99 -4.71 17.52 16 11 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 14 N -0.72 -10.84 4.52 -53.80 -0.24 -11.08 16 15 C 0.51 7.94 7.79 -10.98 -0.09 7.85 16 16 O -0.54 -10.04 15.70 5.55 0.09 -9.95 16 17 C -0.11 -1.39 5.71 -29.03 -0.17 -1.55 16 18 C -0.10 -1.21 4.33 -100.94 -0.44 -1.65 16 19 C -0.15 -1.86 9.37 -35.90 -0.34 -2.20 16 20 C -0.09 -0.90 6.11 -28.18 -0.17 -1.07 16 21 C -0.12 -1.08 6.01 -26.51 -0.16 -1.24 16 22 C -0.12 -1.17 6.01 -26.52 -0.16 -1.33 16 23 C -0.08 -0.83 5.80 -28.18 -0.16 -0.99 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.36 8.48 5.20 -40.82 -0.21 8.27 16 30 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 31 H 0.40 5.62 8.60 -40.82 -0.35 5.27 16 32 H 0.10 1.16 7.80 -51.92 -0.41 0.75 16 33 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.10 1.31 7.74 -52.48 -0.41 0.91 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -32.72 340.24 -8.35 -41.07 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.27 Total: 9.87 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.79 Total: -6.21 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.22 Total: -57.42 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.72 -8.35 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275098670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.585 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds