Wall clock time and date at job start Mon Mar 30 2020 19:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99939 * 4 2 1 6 6 C 1.36938 * 119.99616 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00430 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99364 * 180.02562 * 6 5 4 9 9 N 1.31630 * 119.99727 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00608 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47098 * 89.99633 * 10 8 6 12 12 H 1.48493 * 109.47307 * 210.00122 * 10 8 6 13 13 H 1.48501 * 109.47068 * 330.00181 * 10 8 6 14 14 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 15 15 C 1.34777 * 119.99525 * 84.99977 * 14 2 1 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 2 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 2 18 18 C 1.50703 * 109.47148 * 180.28037 * 17 15 14 19 19 C 1.29437 * 117.96642 * 94.73423 * 18 17 15 20 20 C 1.50062 * 124.08201 * 180.23927 * 19 18 17 21 21 C 1.53028 * 110.19811 * 343.31709 * 20 19 18 22 22 C 1.53392 * 108.43919 * 49.24475 * 21 20 19 23 23 C 1.50066 * 117.95932 * 274.99742 * 18 17 15 24 24 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 25 25 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 26 26 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 28 28 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 29 29 H 0.97000 * 120.00165 * 0.02562 * 5 4 2 30 30 H 0.97000 * 119.99801 * 179.97438 * 9 8 6 31 31 H 0.97000 * 120.00580 * 265.00723 * 14 2 1 32 32 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 33 33 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 34 34 H 1.08004 * 117.96292 * 0.46618 * 19 18 17 35 35 H 1.09004 * 109.48882 * 222.99851 * 20 19 18 36 36 H 1.08993 * 109.18184 * 103.44161 * 20 19 18 37 37 H 1.09001 * 109.64240 * 289.56635 * 21 20 19 38 38 H 1.08998 * 109.81483 * 169.03379 * 21 20 19 39 39 H 1.09000 * 109.64534 * 172.88017 * 22 21 20 40 40 H 1.09006 * 109.64012 * 52.25141 * 22 21 20 41 41 H 1.08999 * 109.36065 * 283.05470 * 23 18 17 42 42 H 1.09005 * 109.36124 * 42.77968 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1837 -1.4387 2.2070 7 1 3.6466 -1.8437 3.0519 8 6 5.5671 -1.5378 2.1517 9 7 6.2243 -2.1269 3.1283 10 14 6.4962 -0.8366 0.6907 11 1 6.8569 0.5774 0.9658 12 1 7.7323 -1.6277 0.4641 13 1 5.6380 -0.9020 -0.5194 14 7 2.0185 -0.6908 -1.1960 15 6 2.1472 -0.0185 -2.3570 16 8 1.8591 1.1584 -2.4116 17 6 2.6554 -0.7275 -3.5859 18 6 2.7114 0.2421 -4.7382 19 6 3.8351 0.8391 -4.9751 20 6 4.0432 1.8318 -6.0811 21 6 2.9123 1.7250 -7.1065 22 6 1.5742 1.7460 -6.3570 23 6 1.4591 0.4598 -5.5360 24 1 -0.3633 0.5140 0.8898 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.7516 -0.1581 2.1370 28 1 1.6053 -1.7197 1.2953 29 1 3.9825 -0.4622 0.4321 30 1 7.1910 -2.1965 3.0894 31 1 2.2491 -1.6319 -1.1524 32 1 3.6539 -1.1197 -3.3923 33 1 1.9842 -1.5494 -3.8349 34 1 4.6765 0.6056 -4.3395 35 1 4.9961 1.6345 -6.5723 36 1 4.0567 2.8376 -5.6616 37 1 3.0072 0.7912 -7.6607 38 1 2.9589 2.5672 -7.7969 39 1 0.7539 1.7983 -7.0730 40 1 1.5400 2.6093 -5.6924 41 1 1.3069 -0.3851 -6.2075 42 1 0.6088 0.5408 -4.8588 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275098670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:52 Heat of formation + Delta-G solvation = -54.449278 kcal Electronic energy + Delta-G solvation = -20513.241947 eV Core-core repulsion = 17491.895832 eV Total energy + Delta-G solvation = -3021.346115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06864 -39.30035 -37.73475 -35.50819 -33.95449 -33.25275 -31.79101 -31.61874 -28.22712 -27.64095 -24.29623 -24.09524 -23.11894 -22.09616 -21.34116 -19.80428 -18.50554 -18.02669 -17.35013 -16.71792 -16.50839 -16.10500 -15.84750 -15.35798 -14.94326 -14.77668 -14.53237 -14.47594 -14.16004 -13.92747 -13.74875 -13.47116 -13.29740 -13.09515 -12.95520 -12.92754 -12.69033 -12.51973 -12.21765 -11.91695 -11.75294 -11.65813 -11.34150 -11.12450 -11.08897 -10.88177 -10.06528 -9.67921 -9.34767 -8.06296 -5.39719 1.23812 1.31521 1.36135 1.42086 1.67511 2.36854 2.43342 3.26078 3.53485 3.64328 3.78342 3.87504 4.04276 4.08361 4.24068 4.27770 4.34451 4.42167 4.45325 4.54467 4.68670 4.72768 4.74270 4.78972 4.84149 4.91533 4.98836 5.03328 5.08151 5.09825 5.18876 5.28764 5.31209 5.46877 5.56939 5.73161 5.73236 6.09399 6.17599 6.59638 7.03458 7.28581 7.78935 7.97311 9.15085 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.005053 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.605311 B = 5539.539338 C = 6643.901611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.137 3.863 3 H 0.063 0.937 4 C 0.148 3.852 5 N -0.757 5.757 6 C -0.233 4.233 7 H 0.063 0.937 8 C -0.057 4.057 9 N -0.980 5.980 10 Si 0.948 3.052 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.253 1.253 14 N -0.716 5.716 15 C 0.511 3.489 16 O -0.576 6.576 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.164 4.164 20 C -0.089 4.089 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.077 4.077 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.364 0.636 30 H 0.258 0.742 31 H 0.411 0.589 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 3.958 -21.726 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.081 0.919 4 C 0.022 3.978 5 N -0.403 5.403 6 C -0.364 4.364 7 H 0.081 0.919 8 C -0.249 4.249 9 N -0.631 5.631 10 Si 0.776 3.224 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.178 1.178 14 N -0.368 5.368 15 C 0.299 3.701 16 O -0.456 6.456 17 C -0.150 4.150 18 C -0.108 4.108 19 C -0.182 4.182 20 C -0.126 4.126 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.114 4.114 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.197 0.803 30 H 0.067 0.933 31 H 0.247 0.753 32 H 0.121 0.879 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.385 4.674 -21.539 24.807 hybrid contribution 1.251 -0.074 0.140 1.261 sum -10.134 4.600 -21.399 24.120 Atomic orbital electron populations 1.21984 0.92672 1.03164 1.02604 1.21108 0.95565 0.96239 0.83851 0.91870 1.21128 0.82760 0.98588 0.95356 1.42708 1.03261 1.70902 1.23472 1.19060 0.90063 1.28229 0.99053 0.91875 1.25400 0.97246 1.01722 1.00531 1.69865 1.07525 1.50713 1.34988 0.85521 0.78503 0.77589 0.80797 1.21534 1.21773 1.17775 1.46112 1.66796 1.14759 1.09153 1.21094 0.76805 0.87056 0.85122 1.90662 1.51757 1.17459 1.85676 1.20946 1.04437 0.99113 0.90521 1.20479 0.95897 0.98265 0.96144 1.22071 0.97573 0.98849 0.99723 1.20441 0.99915 0.97504 0.94748 1.21589 0.93687 1.02828 0.97132 1.21584 0.98372 0.97014 0.98668 1.20356 0.94451 0.98902 0.97690 0.90384 0.92834 0.90835 0.93998 0.93627 0.80301 0.93269 0.75337 0.87908 0.85589 0.89184 0.90058 0.91762 0.90975 0.90502 0.90127 0.93568 0.89231 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.48 71.98 0.68 -2.81 16 2 C 0.14 4.18 2.73 45.00 0.12 4.31 16 3 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 4 C 0.15 5.29 5.82 86.38 0.50 5.79 16 5 N -0.76 -34.55 5.24 -343.44 -1.80 -36.35 16 6 C -0.23 -13.06 10.47 84.03 0.88 -12.18 16 7 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 8 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 9 N -0.98 -62.32 13.97 21.65 0.30 -62.02 16 10 Si 0.95 45.75 27.74 68.60 1.90 47.65 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 14 N -0.72 -20.21 4.52 -442.52 -2.00 -22.21 16 15 C 0.51 14.98 7.79 87.66 0.68 15.67 16 16 O -0.58 -20.99 15.70 -3.04 -0.05 -21.04 16 17 C -0.11 -2.45 5.71 29.10 0.17 -2.28 16 18 C -0.11 -2.46 4.33 -15.09 -0.07 -2.53 16 19 C -0.16 -3.89 9.37 27.04 0.25 -3.63 16 20 C -0.09 -1.72 6.11 29.66 0.18 -1.54 16 21 C -0.11 -1.82 6.01 30.74 0.18 -1.63 16 22 C -0.12 -2.13 6.01 30.73 0.18 -1.95 16 23 C -0.08 -1.50 5.80 29.66 0.17 -1.32 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.36 16.39 5.20 -92.71 -0.48 15.91 16 30 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.41 10.43 8.60 -92.71 -0.80 9.63 16 32 H 0.10 2.19 7.80 -2.38 -0.02 2.17 16 33 H 0.13 2.02 8.11 -2.39 -0.02 2.00 16 34 H 0.09 2.27 7.74 -2.91 -0.02 2.25 16 35 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 1.01 8.12 -2.38 -0.02 0.99 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -70.65 340.24 2.43 -68.21 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -0.34 Total: 32.73 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 4.41 Total: -6.98 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -3.50 Total: -120.57 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Total: -70.65 2.43 -68.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275098670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.764 kcal (2) G-P(sol) polarization free energy of solvation -70.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds