Wall clock time and date at job start Mon Mar 30 2020 19:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33000 * 120.00103 * 2 1 4 4 C 1.47097 * 119.99874 * 173.45525 * 3 2 1 5 5 O 1.21614 * 120.00440 * 353.93782 * 4 3 2 6 6 N 1.34780 * 119.99604 * 173.94214 * 4 3 2 7 7 C 1.46499 * 119.99662 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47260 * 324.99254 * 7 6 4 9 9 C 1.52994 * 109.47552 * 84.99794 * 7 6 4 10 10 C 1.53005 * 109.46952 * 204.99971 * 7 6 4 11 11 N 1.46501 * 109.47226 * 54.99714 * 10 7 6 12 12 C 1.46493 * 119.99850 * 270.00235 * 11 10 7 13 13 C 1.36930 * 119.99809 * 90.00231 * 11 10 7 14 14 H 1.08006 * 120.00393 * 21.02646 * 13 11 10 15 15 C 1.38818 * 119.99936 * 201.03056 * 13 11 10 16 16 N 1.31618 * 119.99782 * 14.89572 * 15 13 11 17 17 Si 1.86803 * 119.99895 * 194.89987 * 15 13 11 18 18 H 1.48492 * 109.47407 * 90.00009 * 17 15 13 19 19 H 1.48506 * 109.46747 * 209.99910 * 17 15 13 20 20 H 1.48498 * 109.47091 * 329.99599 * 17 15 13 21 21 C 1.50697 * 120.00063 * 179.97438 * 2 1 3 22 22 C 1.53001 * 117.49975 * 356.22775 * 21 2 1 23 23 C 1.53000 * 60.00033 * 252.51129 * 22 21 2 24 24 H 1.08999 * 109.47253 * 270.00171 * 1 2 3 25 25 H 1.09001 * 109.47171 * 30.00283 * 1 2 3 26 26 H 1.09001 * 109.47318 * 149.99894 * 1 2 3 27 27 H 1.07995 * 119.99630 * 353.45113 * 3 2 1 28 28 H 0.96998 * 120.00107 * 359.97438 * 6 4 3 29 29 H 1.09002 * 109.47170 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47190 * 300.00208 * 9 7 6 31 31 H 1.08999 * 109.47279 * 59.99472 * 9 7 6 32 32 H 1.09003 * 109.47281 * 175.00269 * 10 7 6 33 33 H 1.08997 * 109.46834 * 294.99611 * 10 7 6 34 34 H 1.09004 * 109.47436 * 95.22163 * 12 11 10 35 35 H 1.09005 * 109.47157 * 215.21770 * 12 11 10 36 36 H 1.08996 * 109.47513 * 335.21947 * 12 11 10 37 37 H 0.97000 * 119.99483 * 180.02562 * 16 15 13 38 38 H 1.08998 * 115.55423 * 141.93741 * 21 2 1 39 39 H 1.09004 * 117.49765 * 0.02562 * 22 21 2 40 40 H 1.09003 * 117.50033 * 145.01845 * 22 21 2 41 41 H 1.09005 * 117.49528 * 252.50765 * 23 22 21 42 42 H 1.09001 * 117.51868 * 107.48419 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6358 1.1559 0.1452 5 8 4.2270 0.1184 0.3754 6 7 4.3218 2.3096 0.0232 7 6 5.7797 2.3136 0.1672 8 1 6.0727 1.5794 0.9177 9 6 6.4257 1.9584 -1.1734 10 6 6.2450 3.7038 0.6052 11 7 5.5362 4.0938 1.8265 12 6 4.2650 4.8163 1.7366 13 6 6.0620 3.7830 3.0521 14 1 7.1163 3.5695 3.1491 15 6 5.2399 3.7423 4.1699 16 7 3.9322 3.7091 4.0242 17 14 5.9896 3.7346 5.8809 18 1 6.1501 5.1319 6.3572 19 1 5.0971 2.9947 6.8090 20 1 7.3173 3.0711 5.8366 21 6 2.2605 -1.3051 0.0006 22 6 1.4410 -2.5940 0.0904 23 6 2.2582 -2.1215 1.2945 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6373 2.0840 -0.1067 28 1 3.8503 3.1371 -0.1607 29 1 7.5104 1.9618 -1.0662 30 1 6.0941 0.9680 -1.4854 31 1 6.1327 2.6926 -1.9238 32 1 7.3177 3.6839 0.7981 33 1 6.0314 4.4240 -0.1846 34 1 3.4391 4.1077 1.7987 35 1 4.1939 5.5300 2.5575 36 1 4.2162 5.3490 0.7869 37 1 3.3578 3.6810 4.8053 38 1 3.1661 -1.3254 -0.6057 39 1 0.3567 -2.4979 0.1487 40 1 1.8072 -3.4625 -0.4570 41 1 3.1622 -2.6793 1.5393 42 1 1.7120 -1.7146 2.1455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275511202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:15 Heat of formation + Delta-G solvation = 24.261395 kcal Electronic energy + Delta-G solvation = -21064.748671 eV Core-core repulsion = 18046.815707 eV Total energy + Delta-G solvation = -3017.932965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.38642 -37.59993 -36.10891 -33.90681 -33.13717 -31.18638 -30.17020 -27.67882 -26.14174 -25.56291 -23.40981 -22.14663 -21.76197 -20.59989 -19.78520 -18.17498 -16.75416 -16.65535 -15.70788 -14.94431 -14.78602 -14.52453 -13.89465 -13.55564 -13.44833 -13.27558 -12.97900 -12.81277 -12.59172 -12.20817 -12.06970 -11.81154 -11.40749 -11.35030 -11.06962 -10.99650 -10.81432 -10.74226 -10.55204 -10.48064 -10.15905 -10.13466 -9.92499 -9.80040 -8.92073 -8.64738 -8.52922 -8.15031 -6.73202 -5.69243 -3.12441 1.72758 3.41321 3.47788 3.49053 3.85424 4.02571 4.21466 4.54386 4.77364 5.03915 5.21546 5.27979 5.33283 5.40105 5.51991 5.60233 5.66601 5.71653 5.76480 5.81191 5.91136 5.95524 6.05818 6.11030 6.15263 6.29845 6.31491 6.47773 6.52652 6.57668 6.62901 6.67716 6.82752 6.97399 7.31000 7.37506 7.68948 7.83991 8.32422 8.41446 9.02467 9.26154 9.89599 10.37051 11.36025 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016994 B = 0.005988 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.208352 B = 4675.106132 C = 5365.689026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.025 4.025 3 C -0.206 4.206 4 C 0.548 3.452 5 O -0.549 6.549 6 N -0.696 5.696 7 C 0.118 3.882 8 H 0.084 0.916 9 C -0.158 4.158 10 C 0.143 3.857 11 N -0.597 5.597 12 C 0.162 3.838 13 C -0.254 4.254 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.280 1.280 21 C -0.102 4.102 22 C -0.197 4.197 23 C -0.152 4.152 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.393 0.607 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.032 0.968 35 H 0.041 0.959 36 H -0.005 1.005 37 H 0.250 0.750 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 -5.306 -10.929 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.026 4.026 3 C -0.227 4.227 4 C 0.337 3.663 5 O -0.429 6.429 6 N -0.344 5.344 7 C 0.010 3.990 8 H 0.102 0.898 9 C -0.217 4.217 10 C 0.014 3.986 11 N -0.319 5.319 12 C 0.017 3.983 13 C -0.384 4.384 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.548 5.548 17 Si 0.733 3.267 18 H -0.216 1.216 19 H -0.219 1.219 20 H -0.205 1.205 21 C -0.120 4.120 22 C -0.234 4.234 23 C -0.189 4.189 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.140 0.860 28 H 0.227 0.773 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.013 0.987 37 H 0.060 0.940 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.145 -5.992 -10.612 13.228 hybrid contribution 0.033 0.461 1.066 1.162 sum -5.112 -5.531 -9.546 12.160 Atomic orbital electron populations 1.20960 0.91527 1.02806 1.02690 1.21660 0.94885 0.93363 0.92735 1.22469 0.94225 0.98200 1.07789 1.18338 0.87401 0.83826 0.76775 1.90693 1.71003 1.31770 1.49453 1.45693 1.07934 1.09489 1.71328 1.21802 0.79399 1.01982 0.95804 0.89787 1.22145 1.00424 1.01047 0.98069 1.21188 0.96656 0.91550 0.89165 1.43903 1.23503 1.63690 1.00813 1.20838 0.87884 0.94533 0.95064 1.19180 0.92222 1.42724 0.84281 0.91389 1.24948 0.95344 1.00957 0.98250 1.70069 1.01978 1.54515 1.28207 0.86282 0.78307 0.77442 0.84687 1.21614 1.21887 1.20548 1.21233 1.00004 0.88043 1.02727 1.23146 0.98300 0.98418 1.03486 1.22751 1.01773 1.02644 0.91728 0.90607 0.91241 0.91195 0.85967 0.77275 0.92285 0.93051 0.93326 0.92443 0.94106 0.94939 0.94017 0.98659 0.93955 0.85572 0.88938 0.89108 0.88786 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.44 36.00 0.34 -1.02 16 2 C -0.02 -0.36 5.80 -101.17 -0.59 -0.95 16 3 C -0.21 -3.38 9.63 -37.81 -0.36 -3.74 16 4 C 0.55 10.80 7.64 -12.67 -0.10 10.70 16 5 O -0.55 -12.16 13.08 5.27 0.07 -12.09 16 6 N -0.70 -13.13 4.42 -54.99 -0.24 -13.37 16 7 C 0.12 2.27 2.88 -67.93 -0.20 2.08 16 8 H 0.08 1.96 7.58 -51.93 -0.39 1.57 16 9 C -0.16 -2.46 9.48 37.15 0.35 -2.11 16 10 C 0.14 2.82 5.33 -4.04 -0.02 2.80 16 11 N -0.60 -14.57 2.78 -181.12 -0.50 -15.07 16 12 C 0.16 3.80 7.60 59.84 0.45 4.25 16 13 C -0.25 -7.00 9.67 -15.06 -0.15 -7.15 16 14 H 0.07 1.85 7.86 -52.48 -0.41 1.44 16 15 C 0.00 0.10 5.07 -17.43 -0.09 0.01 16 16 N -0.90 -26.30 10.70 55.49 0.59 -25.71 16 17 Si 0.90 22.34 29.58 -169.99 -5.03 17.31 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.10 -1.56 4.13 -91.77 -0.38 -1.94 16 22 C -0.20 -2.38 9.77 -26.73 -0.26 -2.64 16 23 C -0.15 -2.26 10.23 -26.73 -0.27 -2.53 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 26 H 0.07 0.66 6.47 -51.93 -0.34 0.32 16 27 H 0.12 1.75 8.04 -52.49 -0.42 1.33 16 28 H 0.39 6.87 7.17 -40.82 -0.29 6.58 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 33 H 0.04 0.71 7.86 -51.93 -0.41 0.31 16 34 H 0.03 0.82 6.96 -51.93 -0.36 0.45 16 35 H 0.04 1.08 7.26 -51.93 -0.38 0.70 16 36 H -0.01 -0.10 7.83 -51.93 -0.41 -0.51 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.13 2.17 6.57 -51.93 -0.34 1.83 16 39 H 0.09 0.97 6.37 -51.93 -0.33 0.64 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -31.45 339.92 -8.27 -39.72 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.01 Total: 6.33 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.27 Total: -2.24 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.15 Total: -54.15 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.45 -8.27 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275511202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.978 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds