Wall clock time and date at job start Mon Mar 30 2020 19:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32994 * 119.99829 * 2 1 4 4 C 1.47101 * 119.99947 * 351.36097 * 3 2 1 5 5 O 1.21615 * 120.00274 * 357.50360 * 4 3 2 6 6 N 1.34777 * 119.99529 * 177.51002 * 4 3 2 7 7 C 1.46508 * 119.99819 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47132 * 34.99055 * 7 6 4 9 9 C 1.53004 * 109.46543 * 274.99443 * 7 6 4 10 10 C 1.52999 * 109.47129 * 154.99604 * 7 6 4 11 11 N 1.46496 * 109.47023 * 304.99931 * 10 7 6 12 12 C 1.46503 * 119.99877 * 269.99850 * 11 10 7 13 13 C 1.36935 * 120.00362 * 90.00502 * 11 10 7 14 14 H 1.08005 * 120.00008 * 17.98679 * 13 11 10 15 15 C 1.38809 * 119.99950 * 197.99251 * 13 11 10 16 16 N 1.31620 * 120.00352 * 18.43186 * 15 13 11 17 17 Si 1.86800 * 119.99882 * 198.42942 * 15 13 11 18 18 H 1.48504 * 109.47290 * 84.98627 * 17 15 13 19 19 H 1.48504 * 109.47490 * 204.99018 * 17 15 13 20 20 H 1.48500 * 109.47028 * 324.98680 * 17 15 13 21 21 C 1.50699 * 119.99871 * 180.02562 * 2 1 3 22 22 C 1.53008 * 117.49832 * 8.74640 * 21 2 1 23 23 C 1.52999 * 117.49989 * 300.08507 * 21 2 1 24 24 H 1.08997 * 109.47605 * 83.73795 * 1 2 3 25 25 H 1.09002 * 109.47476 * 203.74412 * 1 2 3 26 26 H 1.09006 * 109.46996 * 323.73764 * 1 2 3 27 27 H 1.07995 * 119.99360 * 171.35632 * 3 2 1 28 28 H 0.96999 * 120.00095 * 359.97438 * 6 4 3 29 29 H 1.09003 * 109.47005 * 60.00173 * 9 7 6 30 30 H 1.09000 * 109.46522 * 179.97438 * 9 7 6 31 31 H 1.09000 * 109.47449 * 300.00044 * 9 7 6 32 32 H 1.09006 * 109.47075 * 64.99849 * 10 7 6 33 33 H 1.08993 * 109.47049 * 184.99510 * 10 7 6 34 34 H 1.08994 * 109.46936 * 93.99175 * 12 11 10 35 35 H 1.09004 * 109.47099 * 213.99748 * 12 11 10 36 36 H 1.08998 * 109.47055 * 333.99149 * 12 11 10 37 37 H 0.97001 * 120.00038 * 180.02562 * 16 15 13 38 38 H 1.08995 * 115.54995 * 154.41239 * 21 2 1 39 39 H 1.08998 * 117.49691 * 359.97438 * 22 21 2 40 40 H 1.08999 * 117.49694 * 145.01827 * 22 21 2 41 41 H 1.08999 * 117.49778 * 214.98159 * 23 21 2 42 42 H 1.09000 * 117.49647 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4489 2.4185 -0.1914 5 8 0.2500 2.4096 -0.3948 6 7 2.1153 3.5889 -0.1413 7 6 1.3952 4.8505 -0.3313 8 1 0.3986 4.7689 0.1026 9 6 1.2772 5.1500 -1.8271 10 6 2.1600 5.9830 0.3568 11 7 2.3772 5.6406 1.7645 12 6 1.3872 6.0262 2.7733 13 6 3.5055 4.9604 2.1376 14 1 4.3595 4.9276 1.4772 15 6 3.5517 4.3128 3.3646 16 7 2.4357 4.0356 4.0049 17 14 5.1979 3.8349 4.1070 18 1 5.7573 4.9892 4.8552 19 1 5.0095 2.6891 5.0328 20 1 6.1356 3.4463 3.0230 21 6 2.2605 -1.3051 -0.0006 22 6 1.4520 -2.5875 -0.2075 23 6 2.0246 -2.2576 1.1733 24 1 -0.3634 0.1121 -1.0215 25 1 -0.3634 -0.9407 0.4138 26 1 -0.3633 0.8287 0.6079 27 1 3.2427 1.1570 0.1406 28 1 3.0716 3.5960 0.0213 29 1 0.7323 4.3432 -2.3173 30 1 0.7410 6.0884 -1.9685 31 1 2.2737 5.2315 -2.2611 32 1 3.1223 6.1232 -0.1357 33 1 1.5811 6.9042 0.2920 34 1 0.6920 5.2022 2.9336 35 1 1.8945 6.2611 3.7091 36 1 0.8386 6.9024 2.4276 37 1 2.4681 3.5834 4.8624 38 1 3.2636 -1.2686 -0.4253 39 1 0.3751 -2.4872 -0.3428 40 1 1.9235 -3.3948 -0.7680 41 1 2.8724 -2.8479 1.5206 42 1 1.3246 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275511203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:19 Heat of formation + Delta-G solvation = 6.056039 kcal Electronic energy + Delta-G solvation = -21022.917361 eV Core-core repulsion = 18004.194953 eV Total energy + Delta-G solvation = -3018.722408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80954 -38.96639 -37.93942 -35.72719 -34.01479 -33.16001 -31.67250 -28.57547 -28.03824 -27.36480 -25.21019 -23.51297 -23.21961 -21.95268 -21.15331 -19.43153 -18.69600 -17.84509 -17.21048 -16.73647 -16.47026 -15.86481 -15.54858 -15.51780 -15.01882 -14.57594 -14.40301 -14.05020 -13.95084 -13.72027 -13.28310 -13.11675 -12.88816 -12.81126 -12.67502 -12.52182 -12.45125 -12.21115 -12.14398 -11.95688 -11.90442 -11.82840 -11.66237 -11.33852 -10.56364 -10.42954 -9.97592 -9.52834 -8.80205 -7.77533 -5.18867 0.43857 1.47599 1.50853 1.57098 2.40046 2.54684 2.63431 3.02825 3.37556 3.63238 3.74456 3.90433 3.95848 4.12455 4.13585 4.24619 4.38192 4.46960 4.57168 4.67476 4.75533 4.75889 4.81558 4.83909 4.91686 4.97858 5.00481 5.11598 5.14593 5.19841 5.25025 5.31862 5.40872 5.56606 5.62884 5.64590 5.72498 5.88329 6.33934 6.89014 7.17347 7.53587 7.91376 8.36321 9.27120 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.007035 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.456149 B = 3979.091641 C = 5333.030333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.007 4.007 3 C -0.236 4.236 4 C 0.537 3.463 5 O -0.593 6.593 6 N -0.687 5.687 7 C 0.121 3.879 8 H 0.038 0.962 9 C -0.144 4.144 10 C 0.141 3.859 11 N -0.611 5.611 12 C 0.178 3.822 13 C -0.245 4.245 14 H 0.081 0.919 15 C -0.051 4.051 16 N -0.934 5.934 17 Si 0.955 3.045 18 H -0.292 1.292 19 H -0.306 1.306 20 H -0.262 1.262 21 C -0.146 4.146 22 C -0.155 4.155 23 C -0.169 4.169 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.134 0.866 28 H 0.404 0.596 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.074 0.926 34 H -0.012 1.012 35 H 0.020 0.980 36 H 0.030 0.970 37 H 0.242 0.758 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -7.660 -10.512 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.009 4.009 3 C -0.257 4.257 4 C 0.328 3.672 5 O -0.478 6.478 6 N -0.335 5.335 7 C 0.013 3.987 8 H 0.056 0.944 9 C -0.203 4.203 10 C 0.014 3.986 11 N -0.334 5.334 12 C 0.033 3.967 13 C -0.375 4.375 14 H 0.099 0.901 15 C -0.246 4.246 16 N -0.581 5.581 17 Si 0.785 3.215 18 H -0.220 1.220 19 H -0.233 1.233 20 H -0.186 1.186 21 C -0.164 4.164 22 C -0.191 4.191 23 C -0.206 4.206 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.239 0.761 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.007 0.993 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.145 0.855 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.159 -7.661 -10.501 13.000 hybrid contribution 0.957 -0.128 1.185 1.528 sum 1.115 -7.789 -9.316 12.194 Atomic orbital electron populations 1.20980 0.91470 1.01738 1.02651 1.21971 0.95947 0.93308 0.89656 1.22388 1.01023 0.91715 1.10578 1.18833 0.86684 0.85436 0.76292 1.90640 1.15956 1.88293 1.52874 1.45692 1.12317 1.05150 1.70306 1.21685 0.95679 0.85321 0.95981 0.94413 1.22011 1.02423 1.01664 0.94223 1.21383 0.98859 0.94677 0.83632 1.44186 1.22303 1.64781 1.02091 1.20483 0.90824 0.94065 0.91336 1.19423 0.91436 1.24858 1.01827 0.90092 1.25558 0.98901 0.99836 1.00278 1.70314 1.26467 1.45208 1.16107 0.85455 0.80985 0.76512 0.78566 1.21951 1.23309 1.18592 1.21321 1.00751 0.87947 1.06410 1.23178 1.00398 0.96677 0.98867 1.23069 1.04213 1.01625 0.91728 0.90791 0.90726 0.92656 0.84842 0.76075 0.94313 0.90109 0.91172 0.91377 0.90814 0.99346 0.96104 0.95190 0.94920 0.85504 0.88045 0.86019 0.86586 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.63 7.90 71.24 0.56 -3.07 16 2 C -0.01 -0.21 5.81 -17.61 -0.10 -0.32 16 3 C -0.24 -8.50 9.66 23.43 0.23 -8.27 16 4 C 0.54 22.60 7.61 86.57 0.66 23.26 16 5 O -0.59 -27.66 12.90 -4.08 -0.05 -27.72 16 6 N -0.69 -27.46 4.49 -446.11 -2.00 -29.46 16 7 C 0.12 4.59 2.88 44.99 0.13 4.72 16 8 H 0.04 1.71 7.58 -2.39 -0.02 1.69 16 9 C -0.14 -4.25 9.48 71.98 0.68 -3.57 16 10 C 0.14 5.27 5.36 86.38 0.46 5.73 16 11 N -0.61 -29.16 2.82 -726.95 -2.05 -31.21 16 12 C 0.18 8.93 9.03 127.77 1.15 10.09 16 13 C -0.25 -12.43 8.03 84.03 0.67 -11.75 16 14 H 0.08 3.84 7.87 -2.91 -0.02 3.81 16 15 C -0.05 -2.73 4.99 84.86 0.42 -2.31 16 16 N -0.93 -55.22 10.75 21.65 0.23 -54.99 16 17 Si 0.96 43.79 29.59 68.60 2.03 45.82 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.31 -14.56 7.11 99.48 0.71 -13.86 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 21 C -0.15 -3.44 6.01 -11.54 -0.07 -3.51 16 22 C -0.15 -2.78 9.77 30.62 0.30 -2.48 16 23 C -0.17 -3.52 10.11 30.62 0.31 -3.21 16 24 H 0.07 2.36 8.01 -2.39 -0.02 2.34 16 25 H 0.07 1.96 6.27 -2.39 -0.01 1.94 16 26 H 0.05 2.24 6.19 -2.38 -0.01 2.22 16 27 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 28 H 0.40 15.71 7.37 -92.71 -0.68 15.02 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.31 8.03 -2.38 -0.02 2.29 16 33 H 0.07 2.44 7.86 -2.39 -0.02 2.42 16 34 H -0.01 -0.68 7.52 -2.39 -0.02 -0.69 16 35 H 0.02 1.11 7.07 -2.38 -0.02 1.09 16 36 H 0.03 1.27 7.85 -2.39 -0.02 1.25 16 37 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.10 1.82 6.41 -2.39 -0.02 1.80 16 40 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -66.99 339.89 3.88 -63.11 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.31 Total: 29.14 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 5.41 Total: 5.30 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -3.82 Total: -115.66 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.72 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -66.99 3.88 -63.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275511203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.169 kcal (2) G-P(sol) polarization free energy of solvation -66.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds