Wall clock time and date at job start Mon Mar 30 2020 19:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47260 * 239.99977 * 2 1 3 5 5 N 1.46500 * 109.47359 * 185.00078 * 4 2 1 6 6 C 1.46505 * 119.99951 * 270.00135 * 5 4 2 7 7 C 1.36941 * 120.00323 * 89.99654 * 5 4 2 8 8 H 1.08002 * 119.99314 * 20.84587 * 7 5 4 9 9 C 1.38810 * 119.99955 * 200.84671 * 7 5 4 10 10 N 1.31618 * 120.00078 * 15.49259 * 9 7 5 11 11 Si 1.86799 * 119.99461 * 195.49003 * 9 7 5 12 12 H 1.48492 * 109.47565 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46952 * 119.99933 * 11 9 7 14 14 H 1.48501 * 109.47196 * 239.99818 * 11 9 7 15 15 N 1.46505 * 109.46966 * 119.99965 * 2 1 3 16 16 C 1.34775 * 119.99736 * 274.99945 * 15 2 1 17 17 O 1.21280 * 120.00220 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99695 * 180.02562 * 16 15 2 19 19 C 1.52999 * 110.43300 * 57.65385 * 18 16 15 20 20 C 1.51166 * 110.38103 * 295.25974 * 18 16 15 21 21 C 1.30526 * 111.12194 * 257.59852 * 20 18 16 22 22 C 1.51103 * 111.10132 * 0.02562 * 21 20 18 23 23 C 1.54628 * 104.73015 * 343.57149 * 22 21 20 24 24 H 1.09005 * 109.47072 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47162 * 299.99604 * 1 2 3 26 26 H 1.08997 * 109.47063 * 60.00201 * 1 2 3 27 27 H 1.09006 * 109.46990 * 304.99899 * 4 2 1 28 28 H 1.09004 * 109.47395 * 64.99873 * 4 2 1 29 29 H 1.08999 * 109.46971 * 93.93791 * 6 5 4 30 30 H 1.08996 * 109.46972 * 213.93576 * 6 5 4 31 31 H 1.09000 * 109.47013 * 333.94003 * 6 5 4 32 32 H 0.97005 * 119.99813 * 179.97438 * 10 9 7 33 33 H 0.96994 * 120.00062 * 95.00191 * 15 2 1 34 34 H 1.09009 * 109.46546 * 182.34819 * 19 18 16 35 35 H 1.08997 * 109.47178 * 302.34640 * 19 18 16 36 36 H 1.08997 * 109.47028 * 62.35092 * 19 18 16 37 37 H 1.08001 * 124.43028 * 77.61504 * 20 18 16 38 38 H 1.07999 * 124.44905 * 180.02562 * 21 20 18 39 39 H 1.08996 * 110.38594 * 224.75156 * 22 21 20 40 40 H 1.09000 * 110.38226 * 102.38123 * 22 21 20 41 41 H 1.08998 * 111.04176 * 142.66453 * 23 22 21 42 42 H 1.09004 * 111.03538 * 266.56105 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0851 -1.9158 -0.6022 8 1 3.5257 -2.8325 -0.4868 9 6 5.3968 -1.8420 -0.1542 10 7 5.9779 -0.6699 -0.0098 11 14 6.3372 -3.4062 0.2436 12 1 5.4660 -4.5834 -0.0010 13 1 7.5411 -3.4936 -0.6215 14 1 6.7527 -3.3849 1.6692 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8590 1.1586 2.4115 18 6 2.6499 -0.7285 3.5875 19 6 4.0287 -1.3379 3.3264 20 6 1.6719 -1.7995 4.0138 21 6 0.9584 -1.4059 5.0335 22 6 1.3406 -0.0068 5.4573 23 6 2.7101 0.2471 4.7858 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7198 -1.2951 28 1 1.7517 -0.1583 -2.1370 29 1 4.5981 0.9483 -0.9812 30 1 5.2428 -0.2022 -2.1765 31 1 3.7829 0.7451 -2.5504 32 1 6.8945 -0.6183 0.3036 33 1 2.2490 -1.6317 1.1527 34 1 4.3588 -1.8824 4.2113 35 1 3.9692 -2.0221 2.4800 36 1 4.7405 -0.5435 3.1021 37 1 1.5763 -2.7639 3.5372 38 1 0.1951 -2.0020 5.5115 39 1 1.4332 0.0494 6.5419 40 1 0.6036 0.7126 5.1005 41 1 2.7941 1.2794 4.4461 42 1 3.5290 -0.0091 5.4580 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275622137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:31 Heat of formation + Delta-G solvation = -4.255469 kcal Electronic energy + Delta-G solvation = -21985.544814 eV Core-core repulsion = 18966.375265 eV Total energy + Delta-G solvation = -3019.169549 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.03672 -37.50895 -36.00527 -33.90605 -31.82990 -30.77922 -29.65777 -28.58086 -26.16741 -25.59181 -24.57503 -22.56584 -21.32478 -19.80731 -19.49718 -18.41379 -16.80460 -16.46627 -15.62270 -14.99158 -14.86135 -14.22028 -14.04399 -13.65632 -13.22813 -13.01470 -12.82643 -12.48980 -12.16541 -11.89805 -11.68681 -11.63554 -11.58420 -11.37109 -11.32070 -10.91765 -10.87784 -10.69630 -10.68707 -10.43443 -10.26767 -10.20866 -10.02914 -9.82181 -9.40715 -8.56498 -8.49727 -8.14632 -6.78936 -5.74745 -3.18207 2.36707 3.31746 3.40870 3.42347 3.44791 4.06202 4.45480 4.79724 4.89676 5.27756 5.35474 5.37068 5.49594 5.62534 5.65544 5.72647 5.83956 5.92921 5.97204 6.01212 6.04444 6.19438 6.27841 6.29914 6.31819 6.44504 6.48675 6.55338 6.59605 6.63499 6.75454 6.86636 6.93054 7.06063 7.36292 7.41218 7.69877 7.77846 8.34594 8.43628 9.07922 9.19514 9.84441 10.34529 11.29464 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.008600 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.930915 B = 3254.886928 C = 4233.580371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.164 3.836 7 C -0.255 4.255 8 H 0.066 0.934 9 C 0.011 3.989 10 N -0.894 5.894 11 Si 0.888 3.112 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.289 1.289 15 N -0.683 5.683 16 C 0.537 3.463 17 O -0.563 6.563 18 C -0.057 4.057 19 C -0.130 4.130 20 C -0.149 4.149 21 C -0.165 4.165 22 C -0.099 4.099 23 C -0.107 4.107 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.027 0.973 30 H 0.043 0.957 31 H -0.004 1.004 32 H 0.251 0.749 33 H 0.403 0.597 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.470 -1.763 6.052 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.019 3.981 7 C -0.385 4.385 8 H 0.083 0.917 9 C -0.189 4.189 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.216 1.216 15 N -0.332 5.332 16 C 0.323 3.677 17 O -0.443 6.443 18 C -0.061 4.061 19 C -0.188 4.188 20 C -0.167 4.167 21 C -0.183 4.183 22 C -0.136 4.136 23 C -0.144 4.144 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.015 0.985 32 H 0.061 0.939 33 H 0.238 0.762 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.468 -0.889 6.076 10.460 hybrid contribution 0.795 -1.337 0.248 1.575 sum -7.673 -2.226 6.324 10.189 Atomic orbital electron populations 1.22150 0.97113 1.01118 1.01384 1.21788 0.91655 0.98359 0.87238 0.90709 1.21180 0.85980 0.97834 0.93652 1.43896 0.98868 1.22659 1.66470 1.20775 0.92987 0.90512 0.93846 1.19075 0.96205 0.89635 1.33592 0.91673 1.24874 0.98531 0.95873 0.99581 1.70103 1.13032 1.21477 1.49181 0.86459 0.80446 0.83504 0.77785 1.20374 1.21743 1.21568 1.45648 1.64906 1.14214 1.08385 1.20004 0.76784 0.86659 0.84302 1.90576 1.52116 1.16234 1.85369 1.20625 0.96398 0.94691 0.94348 1.21738 0.93709 1.01593 1.01725 1.23160 0.97305 0.98396 0.97847 1.23293 0.99603 0.97013 0.98346 1.21352 0.97536 0.94773 0.99910 1.22440 0.96617 1.00498 0.94890 0.93131 0.93060 0.92421 0.93438 0.93093 0.95440 0.93803 0.98519 0.93864 0.76168 0.92841 0.90873 0.91451 0.85572 0.85958 0.91538 0.90621 0.89330 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.48 37.16 0.35 -2.14 16 2 C 0.12 2.24 2.88 -67.93 -0.20 2.05 16 3 H 0.07 1.65 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.74 5.36 -4.04 -0.02 2.71 16 5 N -0.60 -13.99 2.82 -181.11 -0.51 -14.50 16 6 C 0.16 3.95 9.03 59.85 0.54 4.49 16 7 C -0.26 -6.34 8.01 -15.06 -0.12 -6.46 16 8 H 0.07 1.58 7.86 -52.49 -0.41 1.16 16 9 C 0.01 0.28 5.04 -17.43 -0.09 0.19 16 10 N -0.89 -24.53 10.73 55.49 0.60 -23.93 16 11 Si 0.89 20.50 29.58 -169.99 -5.03 15.48 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 N -0.68 -13.33 4.35 -53.81 -0.23 -13.57 16 16 C 0.54 10.87 6.51 -10.98 -0.07 10.80 16 17 O -0.56 -12.97 15.12 5.56 0.08 -12.88 16 18 C -0.06 -0.99 0.74 -155.72 -0.12 -1.10 16 19 C -0.13 -2.37 8.41 37.16 0.31 -2.06 16 20 C -0.15 -2.17 9.37 -35.67 -0.33 -2.51 16 21 C -0.16 -2.17 10.78 -35.70 -0.38 -2.55 16 22 C -0.10 -1.35 6.81 -26.83 -0.18 -1.53 16 23 C -0.11 -1.69 6.03 -25.01 -0.15 -1.84 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 28 H 0.05 0.90 7.87 -51.93 -0.41 0.50 16 29 H 0.03 0.73 7.46 -51.93 -0.39 0.35 16 30 H 0.04 1.13 7.18 -51.93 -0.37 0.76 16 31 H 0.00 -0.08 7.85 -51.93 -0.41 -0.49 16 32 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.40 7.77 6.71 -40.82 -0.27 7.49 16 34 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.07 1.43 7.45 -51.93 -0.39 1.05 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.57 6.94 -51.93 -0.36 1.21 16 42 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -28.87 336.63 -7.65 -36.53 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.17 Total: 7.75 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.46 Total: 0.05 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.15 Total: -52.00 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.87 -7.65 -36.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275622137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.270 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds