Wall clock time and date at job start Mon Mar 30 2020 19:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47260 * 239.99977 * 2 1 3 5 5 N 1.46500 * 109.47359 * 185.00078 * 4 2 1 6 6 C 1.46505 * 119.99951 * 270.00135 * 5 4 2 7 7 C 1.36941 * 120.00323 * 89.99654 * 5 4 2 8 8 H 1.08002 * 119.99314 * 20.84587 * 7 5 4 9 9 C 1.38810 * 119.99955 * 200.84671 * 7 5 4 10 10 N 1.31618 * 120.00078 * 15.49259 * 9 7 5 11 11 Si 1.86799 * 119.99461 * 195.49003 * 9 7 5 12 12 H 1.48492 * 109.47565 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46952 * 119.99933 * 11 9 7 14 14 H 1.48501 * 109.47196 * 239.99818 * 11 9 7 15 15 N 1.46505 * 109.46966 * 119.99965 * 2 1 3 16 16 C 1.34775 * 119.99736 * 274.99945 * 15 2 1 17 17 O 1.21280 * 120.00220 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99695 * 180.02562 * 16 15 2 19 19 C 1.52999 * 110.43300 * 57.65385 * 18 16 15 20 20 C 1.51166 * 110.38103 * 295.25974 * 18 16 15 21 21 C 1.30526 * 111.12194 * 257.59852 * 20 18 16 22 22 C 1.51103 * 111.10132 * 0.02562 * 21 20 18 23 23 C 1.54628 * 104.73015 * 343.57149 * 22 21 20 24 24 H 1.09005 * 109.47072 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47162 * 299.99604 * 1 2 3 26 26 H 1.08997 * 109.47063 * 60.00201 * 1 2 3 27 27 H 1.09006 * 109.46990 * 304.99899 * 4 2 1 28 28 H 1.09004 * 109.47395 * 64.99873 * 4 2 1 29 29 H 1.08999 * 109.46971 * 93.93791 * 6 5 4 30 30 H 1.08996 * 109.46972 * 213.93576 * 6 5 4 31 31 H 1.09000 * 109.47013 * 333.94003 * 6 5 4 32 32 H 0.97005 * 119.99813 * 179.97438 * 10 9 7 33 33 H 0.96994 * 120.00062 * 95.00191 * 15 2 1 34 34 H 1.09009 * 109.46546 * 182.34819 * 19 18 16 35 35 H 1.08997 * 109.47178 * 302.34640 * 19 18 16 36 36 H 1.08997 * 109.47028 * 62.35092 * 19 18 16 37 37 H 1.08001 * 124.43028 * 77.61504 * 20 18 16 38 38 H 1.07999 * 124.44905 * 180.02562 * 21 20 18 39 39 H 1.08996 * 110.38594 * 224.75156 * 22 21 20 40 40 H 1.09000 * 110.38226 * 102.38123 * 22 21 20 41 41 H 1.08998 * 111.04176 * 142.66453 * 23 22 21 42 42 H 1.09004 * 111.03538 * 266.56105 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0851 -1.9158 -0.6022 8 1 3.5257 -2.8325 -0.4868 9 6 5.3968 -1.8420 -0.1542 10 7 5.9779 -0.6699 -0.0098 11 14 6.3372 -3.4062 0.2436 12 1 5.4660 -4.5834 -0.0010 13 1 7.5411 -3.4936 -0.6215 14 1 6.7527 -3.3849 1.6692 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8590 1.1586 2.4115 18 6 2.6499 -0.7285 3.5875 19 6 4.0287 -1.3379 3.3264 20 6 1.6719 -1.7995 4.0138 21 6 0.9584 -1.4059 5.0335 22 6 1.3406 -0.0068 5.4573 23 6 2.7101 0.2471 4.7858 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7198 -1.2951 28 1 1.7517 -0.1583 -2.1370 29 1 4.5981 0.9483 -0.9812 30 1 5.2428 -0.2022 -2.1765 31 1 3.7829 0.7451 -2.5504 32 1 6.8945 -0.6183 0.3036 33 1 2.2490 -1.6317 1.1527 34 1 4.3588 -1.8824 4.2113 35 1 3.9692 -2.0221 2.4800 36 1 4.7405 -0.5435 3.1021 37 1 1.5763 -2.7639 3.5372 38 1 0.1951 -2.0020 5.5115 39 1 1.4332 0.0494 6.5419 40 1 0.6036 0.7126 5.1005 41 1 2.7941 1.2794 4.4461 42 1 3.5290 -0.0091 5.4580 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275622137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:31 Heat of formation + Delta-G solvation = -20.845852 kcal Electronic energy + Delta-G solvation = -21986.264227 eV Core-core repulsion = 18966.375265 eV Total energy + Delta-G solvation = -3019.888962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47141 -38.93998 -37.70182 -35.65465 -33.42657 -32.44918 -31.12421 -29.75731 -28.02246 -27.34678 -25.96533 -24.06111 -23.04479 -21.38191 -20.77414 -19.76376 -18.61026 -17.91040 -17.17229 -16.77894 -16.21917 -15.75403 -15.59853 -15.34171 -14.95723 -14.46716 -14.42904 -13.97773 -13.81553 -13.39055 -13.14745 -13.10425 -12.89187 -12.82158 -12.72792 -12.66651 -12.51482 -12.18679 -12.10046 -12.05169 -11.91247 -11.87847 -11.67196 -11.60839 -10.84203 -10.54357 -9.79443 -9.72080 -8.73845 -7.73436 -5.18011 1.27256 1.46598 1.52171 1.58626 1.88380 2.54171 2.59737 3.42373 3.56976 3.70264 3.75334 3.94244 4.14058 4.20540 4.36255 4.44338 4.50693 4.56149 4.60490 4.76422 4.80999 4.84288 4.86109 4.91557 4.94196 5.00400 5.01597 5.14943 5.19752 5.30224 5.33643 5.38952 5.41263 5.52815 5.68740 5.74883 5.85649 5.99210 6.37853 6.85425 7.20983 7.50887 7.93684 8.40214 9.30425 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.008600 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.930915 B = 3254.886928 C = 4233.580371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.119 3.881 3 H 0.036 0.964 4 C 0.142 3.858 5 N -0.609 5.609 6 C 0.179 3.821 7 C -0.246 4.246 8 H 0.078 0.922 9 C -0.035 4.035 10 N -0.928 5.928 11 Si 0.941 3.059 12 H -0.261 1.261 13 H -0.304 1.304 14 H -0.292 1.292 15 N -0.682 5.682 16 C 0.527 3.473 17 O -0.600 6.600 18 C -0.057 4.057 19 C -0.119 4.119 20 C -0.168 4.168 21 C -0.142 4.142 22 C -0.098 4.098 23 C -0.111 4.111 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.072 0.928 29 H -0.010 1.010 30 H 0.019 0.981 31 H 0.026 0.974 32 H 0.241 0.759 33 H 0.404 0.596 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.653 -3.889 6.766 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.054 0.946 4 C 0.015 3.985 5 N -0.331 5.331 6 C 0.033 3.967 7 C -0.376 4.376 8 H 0.095 0.905 9 C -0.231 4.231 10 N -0.574 5.574 11 Si 0.771 3.229 12 H -0.185 1.185 13 H -0.232 1.232 14 H -0.220 1.220 15 N -0.329 5.329 16 C 0.314 3.686 17 O -0.483 6.483 18 C -0.060 4.060 19 C -0.177 4.177 20 C -0.186 4.186 21 C -0.159 4.159 22 C -0.135 4.135 23 C -0.149 4.149 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.009 0.991 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.240 0.760 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.694 -3.049 6.775 13.021 hybrid contribution 1.432 -0.609 -0.008 1.557 sum -9.261 -3.658 6.767 12.039 Atomic orbital electron populations 1.22007 0.93938 1.02575 1.01803 1.21708 0.94034 0.96064 0.87060 0.94612 1.21372 0.83428 0.99305 0.94411 1.44117 1.00709 1.22075 1.66232 1.20475 0.92830 0.90014 0.93351 1.19387 0.96104 0.90325 1.31807 0.90450 1.25443 0.99556 0.97722 1.00407 1.70279 1.12652 1.23336 1.51170 0.85604 0.78974 0.81486 0.76858 1.18536 1.23223 1.21969 1.45702 1.64571 1.14194 1.08458 1.20652 0.76183 0.86397 0.85386 1.90549 1.53818 1.17839 1.86072 1.20641 0.96293 0.95765 0.93335 1.21616 0.93783 1.00139 1.02139 1.23138 0.97761 0.98498 0.99200 1.23589 0.98961 0.96332 0.97051 1.21373 0.95566 0.95100 1.01446 1.22459 0.98947 0.98564 0.94947 0.91038 0.94497 0.90175 0.91402 0.90991 0.99139 0.96175 0.95504 0.94934 0.75954 0.90308 0.92460 0.95141 0.83962 0.82483 0.88631 0.91664 0.92215 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.48 71.98 0.68 -3.54 16 2 C 0.12 4.46 2.88 44.99 0.13 4.59 16 3 H 0.04 1.62 7.58 -2.39 -0.02 1.60 16 4 C 0.14 5.19 5.36 86.38 0.46 5.65 16 5 N -0.61 -28.27 2.82 -726.92 -2.05 -30.31 16 6 C 0.18 8.77 9.03 127.77 1.15 9.92 16 7 C -0.25 -12.05 8.01 84.03 0.67 -11.38 16 8 H 0.08 3.58 7.86 -2.91 -0.02 3.55 16 9 C -0.04 -1.84 5.04 84.86 0.43 -1.41 16 10 N -0.93 -52.81 10.73 21.65 0.23 -52.58 16 11 Si 0.94 42.31 29.58 68.60 2.03 44.33 16 12 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 13 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 14 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 15 N -0.68 -26.47 4.35 -442.53 -1.92 -28.40 16 16 C 0.53 21.68 6.51 87.66 0.57 22.25 16 17 O -0.60 -28.70 15.12 -3.03 -0.05 -28.75 16 18 C -0.06 -1.95 0.74 -52.97 -0.04 -1.99 16 19 C -0.12 -4.37 8.41 71.98 0.61 -3.77 16 20 C -0.17 -4.48 9.37 26.28 0.25 -4.23 16 21 C -0.14 -3.22 10.78 26.26 0.28 -2.94 16 22 C -0.10 -2.45 6.81 30.53 0.21 -2.24 16 23 C -0.11 -3.49 6.03 31.71 0.19 -3.30 16 24 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 2.25 8.03 -2.38 -0.02 2.23 16 28 H 0.07 2.35 7.87 -2.39 -0.02 2.33 16 29 H -0.01 -0.55 7.46 -2.39 -0.02 -0.57 16 30 H 0.02 1.05 7.18 -2.39 -0.02 1.03 16 31 H 0.03 1.12 7.85 -2.39 -0.02 1.10 16 32 H 0.24 13.69 8.31 -92.70 -0.77 12.92 16 33 H 0.40 15.25 6.71 -92.71 -0.62 14.63 16 34 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.06 2.25 7.45 -2.39 -0.02 2.23 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 2.20 6.94 -2.39 -0.02 2.19 16 42 H 0.09 2.41 7.91 -2.38 -0.02 2.39 16 Total: -1.00 -64.91 336.63 4.20 -60.71 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.36 Total: 27.36 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 5.59 Total: 7.63 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -3.74 Total: -111.29 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.05 Total: -28.75 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -64.91 4.20 -60.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275622137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.868 kcal (2) G-P(sol) polarization free energy of solvation -64.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds