Wall clock time and date at job start Mon Mar 30 2020 19:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47075 * 2 1 4 4 C 1.52996 * 109.47141 * 119.99718 * 2 1 3 5 5 N 1.46495 * 109.47420 * 174.99999 * 4 2 1 6 6 C 1.46504 * 120.00151 * 270.00175 * 5 4 2 7 7 C 1.36936 * 120.00296 * 89.99515 * 5 4 2 8 8 H 1.08002 * 120.00154 * 217.36170 * 7 5 4 9 9 C 1.38816 * 119.99682 * 37.36529 * 7 5 4 10 10 N 1.31616 * 119.99728 * 200.62790 * 9 7 5 11 11 Si 1.86800 * 119.99945 * 20.62461 * 9 7 5 12 12 H 1.48496 * 109.47260 * 264.33183 * 11 9 7 13 13 H 1.48502 * 109.46957 * 24.33312 * 11 9 7 14 14 H 1.48502 * 109.46881 * 144.32990 * 11 9 7 15 15 N 1.46500 * 109.46830 * 239.99431 * 2 1 3 16 16 C 1.34781 * 119.99681 * 85.00583 * 15 2 1 17 17 O 1.21282 * 120.00170 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99673 * 180.02562 * 16 15 2 19 19 C 1.53003 * 110.34885 * 57.70708 * 18 16 15 20 20 C 1.51106 * 110.38709 * 295.29793 * 18 16 15 21 21 C 1.30528 * 111.10264 * 257.62910 * 20 18 16 22 22 C 1.51105 * 111.10638 * 359.97438 * 21 20 18 23 23 C 1.54639 * 104.72509 * 343.56658 * 22 21 20 24 24 H 1.09004 * 109.46533 * 300.00422 * 1 2 3 25 25 H 1.08999 * 109.46815 * 60.00256 * 1 2 3 26 26 H 1.08998 * 109.47008 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47157 * 54.99580 * 4 2 1 28 28 H 1.09001 * 109.47144 * 294.99678 * 4 2 1 29 29 H 1.08999 * 109.47167 * 275.68240 * 6 5 4 30 30 H 1.09006 * 109.47110 * 35.67728 * 6 5 4 31 31 H 1.09001 * 109.47368 * 155.67768 * 6 5 4 32 32 H 0.97007 * 119.99854 * 180.02562 * 10 9 7 33 33 H 0.96999 * 119.99959 * 264.99462 * 15 2 1 34 34 H 1.08998 * 109.46678 * 60.69884 * 19 18 16 35 35 H 1.09002 * 109.47190 * 180.69891 * 19 18 16 36 36 H 1.08994 * 109.46969 * 300.70279 * 19 18 16 37 37 H 1.07998 * 124.44925 * 77.60320 * 20 18 16 38 38 H 1.07998 * 124.44537 * 179.97438 * 21 20 18 39 39 H 1.08994 * 110.39007 * 224.75569 * 22 21 20 40 40 H 1.09005 * 110.38479 * 102.37377 * 22 21 20 41 41 H 1.09000 * 111.03449 * 266.60164 * 23 22 21 42 42 H 1.09003 * 111.06900 * 142.67709 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1259 -1.9919 0.5613 7 6 4.2799 0.1649 1.7239 8 1 5.1979 0.4528 1.2331 9 6 3.8906 0.7996 2.8955 10 7 4.3796 1.9841 3.1960 11 14 2.6727 -0.0272 4.0454 12 1 1.3034 0.4694 3.7565 13 1 2.7193 -1.4975 3.8416 14 1 3.0273 0.2889 5.4524 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8583 1.1583 -2.4118 18 6 2.6488 -0.7291 -3.5877 19 6 1.7495 -1.9224 -3.9167 20 6 4.0766 -1.1820 -3.3886 21 6 4.9111 -0.3904 -4.0055 22 6 4.1791 0.7222 -4.7194 23 6 2.7094 0.2458 -4.7867 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6053 -1.7198 1.2953 28 1 1.7517 -0.1582 2.1369 29 1 4.1902 -2.8047 1.2848 30 1 3.5256 -2.3109 -0.2908 31 1 5.1273 -1.7276 0.2217 32 1 4.1078 2.4275 4.0148 33 1 2.2491 -1.6319 -1.1525 34 1 0.7360 -1.5710 -4.1101 35 1 2.1320 -2.4328 -4.8007 36 1 1.7399 -2.6133 -3.0738 37 1 4.3682 -2.0469 -2.8113 38 1 5.9839 -0.5143 -4.0057 39 1 4.5806 0.8578 -5.7236 40 1 4.2519 1.6500 -4.1518 41 1 2.5089 -0.2732 -5.7240 42 1 2.0206 1.0793 -4.6483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275622138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:35 Heat of formation + Delta-G solvation = 4.593274 kcal Electronic energy + Delta-G solvation = -21732.997356 eV Core-core repulsion = 18714.211518 eV Total energy + Delta-G solvation = -3018.785838 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34637 -37.79050 -36.34738 -34.00697 -31.93654 -31.44310 -30.20902 -28.74654 -26.69971 -25.66905 -25.00103 -22.74053 -21.26007 -20.39307 -19.70876 -18.69080 -17.12197 -16.58663 -15.80970 -15.38776 -15.10089 -14.54218 -14.27754 -13.97867 -13.44281 -13.12696 -13.03401 -12.95959 -12.58814 -12.33380 -12.14032 -11.91008 -11.84616 -11.73688 -11.56439 -11.32444 -11.09256 -11.02295 -10.84270 -10.73872 -10.54758 -10.23749 -10.06542 -9.64714 -9.55477 -8.69830 -8.62518 -8.41219 -6.84752 -5.98689 -3.41735 2.26572 3.15955 3.26706 3.43317 3.47203 3.69153 4.49356 4.52750 4.68903 4.90627 4.98886 5.10558 5.27440 5.35795 5.40343 5.53018 5.58391 5.67237 5.71909 5.80325 5.86640 5.88746 5.94211 6.01219 6.05699 6.08583 6.14988 6.21852 6.34732 6.37133 6.48887 6.53789 6.57333 6.62112 6.85530 6.92645 7.10879 8.02922 8.03587 8.36806 8.73664 8.94888 9.68937 10.07586 11.17013 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.006391 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.265935 B = 4380.084702 C = 4677.161658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 H 0.093 0.907 4 C 0.131 3.869 5 N -0.607 5.607 6 C 0.129 3.871 7 C -0.267 4.267 8 H 0.078 0.922 9 C 0.033 3.967 10 N -0.899 5.899 11 Si 0.880 3.120 12 H -0.285 1.285 13 H -0.270 1.270 14 H -0.301 1.301 15 N -0.702 5.702 16 C 0.529 3.471 17 O -0.544 6.544 18 C -0.060 4.060 19 C -0.133 4.133 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.102 4.102 23 C -0.106 4.106 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.007 0.993 30 H 0.020 0.980 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.392 0.608 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -9.330 -14.054 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.013 3.987 3 H 0.111 0.889 4 C 0.004 3.996 5 N -0.330 5.330 6 C -0.016 4.016 7 C -0.396 4.396 8 H 0.095 0.905 9 C -0.167 4.167 10 N -0.541 5.541 11 Si 0.710 3.290 12 H -0.213 1.213 13 H -0.195 1.195 14 H -0.229 1.229 15 N -0.353 5.353 16 C 0.314 3.686 17 O -0.421 6.421 18 C -0.063 4.063 19 C -0.190 4.190 20 C -0.176 4.176 21 C -0.167 4.167 22 C -0.139 4.139 23 C -0.144 4.144 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.025 0.975 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.228 0.772 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.108 -8.359 -13.943 17.040 hybrid contribution -0.434 -0.824 0.954 1.334 sum -5.543 -9.183 -12.988 16.844 Atomic orbital electron populations 1.22154 0.96631 1.01144 1.02018 1.21760 0.92047 0.99501 0.85364 0.88877 1.21502 0.85436 0.97464 0.95204 1.43935 0.99989 1.20851 1.68268 1.21119 0.96962 0.89243 0.94317 1.18779 1.06452 1.10617 1.03709 0.90452 1.25465 0.97997 0.96186 0.97052 1.69859 1.46029 1.12600 1.25575 0.86892 0.80560 0.80927 0.80591 1.21308 1.19520 1.22887 1.46018 1.66314 1.13559 1.09374 1.20158 0.77117 0.87030 0.84307 1.90645 1.50691 1.15891 1.84891 1.20652 0.94856 0.96361 0.94459 1.21770 0.99000 0.96266 1.02013 1.22991 0.92926 1.00528 1.01154 1.23336 0.99218 0.95676 0.98500 1.21389 0.94223 0.98306 1.00004 1.22445 0.97520 0.98760 0.95640 0.91947 0.92625 0.93162 0.93867 0.91660 0.97502 0.96120 0.93476 0.92688 0.77186 0.92132 0.91565 0.92248 0.85438 0.85606 0.91281 0.90097 0.90893 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.48 37.16 0.35 -2.27 16 2 C 0.12 2.34 2.88 -67.93 -0.20 2.15 16 3 H 0.09 2.23 7.58 -51.93 -0.39 1.84 16 4 C 0.13 2.73 4.15 -4.05 -0.02 2.72 16 5 N -0.61 -14.05 2.35 -181.11 -0.43 -14.47 16 6 C 0.13 2.43 10.39 59.85 0.62 3.05 16 7 C -0.27 -7.47 9.91 -15.06 -0.15 -7.62 16 8 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.03 0.97 5.33 -17.43 -0.09 0.87 16 10 N -0.90 -27.72 13.97 55.49 0.78 -26.94 16 11 Si 0.88 22.05 24.90 -169.99 -4.23 17.82 16 12 H -0.28 -6.88 6.71 56.52 0.38 -6.50 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 15 N -0.70 -11.88 4.37 -53.81 -0.24 -12.11 16 16 C 0.53 9.23 6.51 -10.98 -0.07 9.16 16 17 O -0.54 -11.59 15.12 5.56 0.08 -11.51 16 18 C -0.06 -0.80 0.74 -155.74 -0.12 -0.92 16 19 C -0.13 -1.37 8.39 37.16 0.31 -1.06 16 20 C -0.16 -2.04 9.37 -35.70 -0.33 -2.37 16 21 C -0.15 -1.91 10.78 -35.70 -0.38 -2.29 16 22 C -0.10 -1.31 6.81 -26.82 -0.18 -1.49 16 23 C -0.11 -1.35 6.03 -25.00 -0.15 -1.50 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.79 8.07 -51.92 -0.42 0.37 16 28 H 0.07 1.52 3.11 -51.93 -0.16 1.36 16 29 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.02 0.32 5.52 -51.93 -0.29 0.03 16 31 H 0.05 0.90 7.99 -51.93 -0.42 0.48 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.39 5.77 5.43 -40.82 -0.22 5.55 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.56 7.50 -51.93 -0.39 0.17 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 42 H 0.09 1.29 6.95 -51.93 -0.36 0.93 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -32.54 330.08 -6.33 -38.88 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.87 Total: 4.93 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.41 Total: -1.57 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.11 Total: -53.53 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.23 Total: 17.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.54 -6.33 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275622138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.471 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds