Wall clock time and date at job start Mon Mar 30 2020 19:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47075 * 2 1 4 4 C 1.52996 * 109.47141 * 119.99718 * 2 1 3 5 5 N 1.46495 * 109.47420 * 174.99999 * 4 2 1 6 6 C 1.46504 * 120.00151 * 270.00175 * 5 4 2 7 7 C 1.36936 * 120.00296 * 89.99515 * 5 4 2 8 8 H 1.08002 * 120.00154 * 217.36170 * 7 5 4 9 9 C 1.38816 * 119.99682 * 37.36529 * 7 5 4 10 10 N 1.31616 * 119.99728 * 200.62790 * 9 7 5 11 11 Si 1.86800 * 119.99945 * 20.62461 * 9 7 5 12 12 H 1.48496 * 109.47260 * 264.33183 * 11 9 7 13 13 H 1.48502 * 109.46957 * 24.33312 * 11 9 7 14 14 H 1.48502 * 109.46881 * 144.32990 * 11 9 7 15 15 N 1.46500 * 109.46830 * 239.99431 * 2 1 3 16 16 C 1.34781 * 119.99681 * 85.00583 * 15 2 1 17 17 O 1.21282 * 120.00170 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99673 * 180.02562 * 16 15 2 19 19 C 1.53003 * 110.34885 * 57.70708 * 18 16 15 20 20 C 1.51106 * 110.38709 * 295.29793 * 18 16 15 21 21 C 1.30528 * 111.10264 * 257.62910 * 20 18 16 22 22 C 1.51105 * 111.10638 * 359.97438 * 21 20 18 23 23 C 1.54639 * 104.72509 * 343.56658 * 22 21 20 24 24 H 1.09004 * 109.46533 * 300.00422 * 1 2 3 25 25 H 1.08999 * 109.46815 * 60.00256 * 1 2 3 26 26 H 1.08998 * 109.47008 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47157 * 54.99580 * 4 2 1 28 28 H 1.09001 * 109.47144 * 294.99678 * 4 2 1 29 29 H 1.08999 * 109.47167 * 275.68240 * 6 5 4 30 30 H 1.09006 * 109.47110 * 35.67728 * 6 5 4 31 31 H 1.09001 * 109.47368 * 155.67768 * 6 5 4 32 32 H 0.97007 * 119.99854 * 180.02562 * 10 9 7 33 33 H 0.96999 * 119.99959 * 264.99462 * 15 2 1 34 34 H 1.08998 * 109.46678 * 60.69884 * 19 18 16 35 35 H 1.09002 * 109.47190 * 180.69891 * 19 18 16 36 36 H 1.08994 * 109.46969 * 300.70279 * 19 18 16 37 37 H 1.07998 * 124.44925 * 77.60320 * 20 18 16 38 38 H 1.07998 * 124.44537 * 179.97438 * 21 20 18 39 39 H 1.08994 * 110.39007 * 224.75569 * 22 21 20 40 40 H 1.09005 * 110.38479 * 102.37377 * 22 21 20 41 41 H 1.09000 * 111.03449 * 266.60164 * 23 22 21 42 42 H 1.09003 * 111.06900 * 142.67709 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1259 -1.9919 0.5613 7 6 4.2799 0.1649 1.7239 8 1 5.1979 0.4528 1.2331 9 6 3.8906 0.7996 2.8955 10 7 4.3796 1.9841 3.1960 11 14 2.6727 -0.0272 4.0454 12 1 1.3034 0.4694 3.7565 13 1 2.7193 -1.4975 3.8416 14 1 3.0273 0.2889 5.4524 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8583 1.1583 -2.4118 18 6 2.6488 -0.7291 -3.5877 19 6 1.7495 -1.9224 -3.9167 20 6 4.0766 -1.1820 -3.3886 21 6 4.9111 -0.3904 -4.0055 22 6 4.1791 0.7222 -4.7194 23 6 2.7094 0.2458 -4.7867 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6053 -1.7198 1.2953 28 1 1.7517 -0.1582 2.1369 29 1 4.1902 -2.8047 1.2848 30 1 3.5256 -2.3109 -0.2908 31 1 5.1273 -1.7276 0.2217 32 1 4.1078 2.4275 4.0148 33 1 2.2491 -1.6319 -1.1525 34 1 0.7360 -1.5710 -4.1101 35 1 2.1320 -2.4328 -4.8007 36 1 1.7399 -2.6133 -3.0738 37 1 4.3682 -2.0469 -2.8113 38 1 5.9839 -0.5143 -4.0057 39 1 4.5806 0.8578 -5.7236 40 1 4.2519 1.6500 -4.1518 41 1 2.5089 -0.2732 -5.7240 42 1 2.0206 1.0793 -4.6483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275622138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:35 Heat of formation + Delta-G solvation = -17.062284 kcal Electronic energy + Delta-G solvation = -21733.936411 eV Core-core repulsion = 18714.211518 eV Total energy + Delta-G solvation = -3019.724894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59969 -39.13776 -37.93170 -35.69691 -33.64192 -33.00547 -31.44099 -29.77297 -28.31175 -27.53575 -25.96518 -24.10520 -23.04028 -21.90643 -20.86961 -19.89618 -18.90895 -17.96894 -17.39444 -16.91663 -16.55978 -15.98619 -15.75669 -15.39032 -14.95214 -14.71361 -14.56051 -14.33322 -13.99125 -13.64511 -13.51935 -13.24993 -13.18201 -12.87407 -12.79526 -12.72878 -12.64035 -12.28879 -12.13514 -12.06490 -11.99581 -11.86903 -11.66394 -11.60218 -10.94213 -10.68093 -9.98868 -9.78958 -8.77281 -8.20561 -5.60529 1.21454 1.28633 1.40180 1.51575 1.82618 2.34490 2.40069 3.01705 3.40813 3.53034 3.65940 3.83832 4.02521 4.11453 4.22577 4.32130 4.41923 4.49162 4.57163 4.59077 4.62370 4.76160 4.79842 4.81090 4.83594 4.92930 5.02772 5.04144 5.10972 5.11931 5.13533 5.24099 5.29207 5.37759 5.54090 5.65866 5.91526 5.94159 6.13782 6.68844 6.95684 7.39187 7.60187 7.99661 8.99714 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.006391 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.265935 B = 4380.084702 C = 4677.161658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.127 3.873 3 H 0.034 0.966 4 C 0.127 3.873 5 N -0.619 5.619 6 C 0.126 3.874 7 C -0.257 4.257 8 H 0.031 0.969 9 C -0.029 4.029 10 N -0.955 5.955 11 Si 0.952 3.048 12 H -0.271 1.271 13 H -0.249 1.249 14 H -0.310 1.310 15 N -0.693 5.693 16 C 0.520 3.480 17 O -0.592 6.592 18 C -0.057 4.057 19 C -0.128 4.128 20 C -0.164 4.164 21 C -0.158 4.158 22 C -0.106 4.106 23 C -0.106 4.106 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.262 0.738 33 H 0.406 0.594 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.094 0.906 40 H 0.048 0.952 41 H 0.105 0.895 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 -13.085 -15.049 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 H 0.052 0.948 4 C 0.001 3.999 5 N -0.343 5.343 6 C -0.018 4.018 7 C -0.387 4.387 8 H 0.048 0.952 9 C -0.225 4.225 10 N -0.599 5.599 11 Si 0.780 3.220 12 H -0.198 1.198 13 H -0.172 1.172 14 H -0.239 1.239 15 N -0.344 5.344 16 C 0.307 3.693 17 O -0.473 6.473 18 C -0.060 4.060 19 C -0.186 4.186 20 C -0.182 4.182 21 C -0.176 4.176 22 C -0.143 4.143 23 C -0.144 4.144 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.245 0.755 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.695 -12.188 -14.968 20.431 hybrid contribution 0.143 0.402 1.144 1.221 sum -6.552 -11.786 -13.824 19.312 Atomic orbital electron populations 1.22053 0.93816 1.03308 1.01748 1.21435 0.94177 0.96411 0.86081 0.94805 1.21608 0.84056 0.99487 0.94709 1.44034 1.00797 1.21115 1.68334 1.21262 0.96988 0.87862 0.95714 1.18620 1.05429 1.11380 1.03320 0.95162 1.26187 1.01010 0.96467 0.98847 1.70021 1.49096 1.14535 1.26255 0.85725 0.78502 0.80657 0.77114 1.19812 1.17234 1.23915 1.45884 1.66031 1.14016 1.08495 1.21025 0.76112 0.86642 0.85473 1.90630 1.52682 1.18239 1.85738 1.20700 0.95778 0.97284 0.92205 1.21792 0.98231 0.94932 1.03610 1.23202 0.92450 1.01194 1.01344 1.23578 1.00133 0.95347 0.98497 1.21416 0.94896 0.97030 1.00999 1.22480 0.96674 0.98260 0.96956 0.91895 0.93345 0.89625 0.89460 0.93847 0.95882 0.92134 0.94527 0.92919 0.75510 0.92114 0.89219 0.90924 0.83714 0.84195 0.88778 0.93387 0.87711 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 9.48 71.98 0.68 -3.92 16 2 C 0.13 4.83 2.88 44.99 0.13 4.96 16 3 H 0.03 1.69 7.58 -2.39 -0.02 1.67 16 4 C 0.13 5.01 4.15 86.38 0.36 5.37 16 5 N -0.62 -27.85 2.35 -726.92 -1.71 -29.56 16 6 C 0.13 4.38 10.39 127.77 1.33 5.71 16 7 C -0.26 -14.79 9.91 84.03 0.83 -13.96 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 9 C -0.03 -1.74 5.33 84.86 0.45 -1.28 16 10 N -0.95 -61.47 13.97 21.65 0.30 -61.17 16 11 Si 0.95 45.73 24.90 68.60 1.71 47.44 16 12 H -0.27 -12.28 6.71 99.48 0.67 -11.62 16 13 H -0.25 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.31 -15.25 7.11 99.48 0.71 -14.55 16 15 N -0.69 -22.19 4.37 -442.53 -1.93 -24.13 16 16 C 0.52 17.91 6.51 87.66 0.57 18.48 16 17 O -0.59 -26.22 15.12 -3.04 -0.05 -26.27 16 18 C -0.06 -1.40 0.74 -52.98 -0.04 -1.43 16 19 C -0.13 -2.14 8.39 71.98 0.60 -1.54 16 20 C -0.16 -3.84 9.37 26.26 0.25 -3.59 16 21 C -0.16 -3.80 10.78 26.26 0.28 -3.51 16 22 C -0.11 -2.67 6.81 30.53 0.21 -2.46 16 23 C -0.11 -2.58 6.03 31.72 0.19 -2.38 16 24 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.09 2.72 8.07 -2.38 -0.02 2.70 16 28 H 0.04 1.93 3.11 -2.39 -0.01 1.92 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.60 5.52 -2.38 -0.01 1.58 16 31 H 0.04 1.34 7.99 -2.39 -0.02 1.32 16 32 H 0.26 15.96 8.31 -92.70 -0.77 15.18 16 33 H 0.41 10.42 5.43 -92.71 -0.50 9.92 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.03 7.50 -2.39 -0.02 1.01 16 37 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.10 1.85 7.91 -2.39 -0.02 1.83 16 42 H 0.06 1.89 6.95 -2.39 -0.02 1.88 16 Total: -1.00 -76.04 330.08 4.62 -71.42 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.45 Total: 21.84 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.85 Total: 0.43 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -3.34 Total: -114.85 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.27 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.71 Total: 47.44 kcal Total: -76.04 4.62 -71.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275622138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.358 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds