Wall clock time and date at job start Mon Mar 30 2020 19:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46874 * 2 1 4 4 C 1.52990 * 109.47080 * 120.00672 * 2 1 3 5 5 N 1.46504 * 109.47208 * 174.99968 * 4 2 1 6 6 C 1.34772 * 120.00161 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00301 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00068 * 179.97438 * 6 5 4 9 9 C 1.53004 * 110.34482 * 302.28851 * 8 6 5 10 10 C 1.51102 * 110.38999 * 64.69716 * 8 6 5 11 11 C 1.30521 * 111.10561 * 102.37652 * 10 8 6 12 12 C 1.51102 * 111.10463 * 0.02562 * 11 10 8 13 13 C 1.54628 * 110.38929 * 180.02562 * 8 6 5 14 14 N 1.46502 * 109.46922 * 240.00779 * 2 1 3 15 15 C 1.46504 * 119.99597 * 299.99584 * 14 2 1 16 16 C 1.36934 * 120.00461 * 119.99686 * 14 2 1 17 17 H 1.08002 * 119.99738 * 23.10224 * 16 14 2 18 18 C 1.38804 * 120.00137 * 203.09427 * 16 14 2 19 19 N 1.31622 * 120.00502 * 13.00488 * 18 16 14 20 20 Si 1.86803 * 119.99967 * 193.00561 * 18 16 14 21 21 H 1.48500 * 109.47387 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47408 * 120.00224 * 20 18 16 23 23 H 1.48501 * 109.46972 * 240.00124 * 20 18 16 24 24 H 1.09001 * 109.47074 * 59.99303 * 1 2 3 25 25 H 1.08994 * 109.47323 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46599 * 299.99925 * 1 2 3 27 27 H 1.08998 * 109.47603 * 54.99501 * 4 2 1 28 28 H 1.09003 * 109.47183 * 294.99298 * 4 2 1 29 29 H 0.96999 * 119.99712 * 359.97438 * 5 4 2 30 30 H 1.09003 * 109.47255 * 297.71070 * 9 8 6 31 31 H 1.08999 * 109.47270 * 57.71320 * 9 8 6 32 32 H 1.09001 * 109.47191 * 177.71291 * 9 8 6 33 33 H 1.08004 * 124.44424 * 282.39845 * 10 8 6 34 34 H 1.07995 * 124.44956 * 180.27501 * 11 10 8 35 35 H 1.08994 * 110.39100 * 135.24854 * 12 11 10 36 36 H 1.09001 * 110.39097 * 257.51450 * 12 11 10 37 37 H 1.09001 * 111.03920 * 147.78817 * 13 8 6 38 38 H 1.09004 * 111.07087 * 23.86871 * 13 8 6 39 39 H 1.09005 * 109.47234 * 95.13257 * 15 14 2 40 40 H 1.08992 * 109.47183 * 215.12860 * 15 14 2 41 41 H 1.08997 * 109.47569 * 335.13514 * 15 14 2 42 42 H 0.96992 * 120.00361 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4285 2.1909 7 8 3.5701 -1.8836 3.1396 8 6 5.6750 -1.5371 2.1303 9 6 6.1040 -2.2763 0.8612 10 6 6.3046 -0.1645 2.1810 11 6 6.7808 0.0905 3.3692 12 6 6.5487 -1.0698 4.3089 13 6 6.2136 -2.2638 3.3844 14 7 2.0184 -0.6905 -1.1963 15 6 1.6644 -2.0931 -1.4282 16 6 2.8056 -0.0249 -2.0977 17 1 3.3701 0.8412 -1.7854 18 6 2.8781 -0.4636 -3.4126 19 7 2.0107 -1.3464 -3.8607 20 14 4.2067 0.1990 -4.5463 21 1 5.0496 1.1717 -3.8057 22 1 5.0524 -0.9231 -5.0266 23 1 3.5745 0.8747 -5.7078 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.6054 -1.7199 1.2950 28 1 1.7518 -0.1584 2.1369 29 1 3.9824 -0.4628 0.4315 30 1 5.7085 -3.2919 0.8809 31 1 5.7169 -1.7526 -0.0128 32 1 7.1923 -2.3112 0.8114 33 1 6.3537 0.5164 1.3441 34 1 7.2723 1.0116 3.6457 35 1 7.4498 -1.2772 4.8860 36 1 5.7125 -0.8576 4.9751 37 1 7.1089 -2.8393 3.1490 38 1 5.4476 -2.8999 3.8280 39 1 0.7890 -2.1447 -2.0757 40 1 2.5001 -2.6045 -1.9057 41 1 1.4406 -2.5736 -0.4758 42 1 2.0612 -1.6526 -4.7797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275904249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:42 Heat of formation + Delta-G solvation = -5.616400 kcal Electronic energy + Delta-G solvation = -21381.959483 eV Core-core repulsion = 18362.730920 eV Total energy + Delta-G solvation = -3019.228563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29658 -37.65829 -36.46475 -33.77920 -32.19306 -31.14446 -29.33219 -28.85589 -26.03416 -25.89555 -24.68710 -23.09220 -21.66783 -19.76542 -19.30991 -18.39766 -16.96986 -16.78354 -15.75328 -15.35579 -15.06952 -14.47264 -14.38857 -13.87931 -13.33868 -12.99766 -12.75886 -12.71283 -12.28000 -12.16881 -11.97392 -11.83625 -11.77443 -11.43695 -11.21754 -11.02764 -11.01661 -10.85097 -10.75135 -10.63269 -10.42466 -10.27487 -9.91282 -9.78139 -9.69654 -8.75810 -8.61474 -8.44430 -6.80994 -5.77213 -3.24870 2.18986 3.09884 3.32492 3.39599 3.41669 3.76197 4.42945 4.55485 4.67230 5.02995 5.13996 5.34387 5.35605 5.41956 5.46293 5.56910 5.61585 5.75594 5.78748 5.90805 5.94988 6.00885 6.10659 6.14551 6.20067 6.28716 6.32887 6.39812 6.44446 6.46389 6.76907 6.84829 6.86121 6.91284 7.08912 7.36356 7.70129 7.76527 8.11047 8.34164 8.71701 9.18169 9.81457 10.31554 11.26851 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.006303 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.067522 B = 4441.574770 C = 5287.196181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.067 0.933 4 C 0.106 3.894 5 N -0.701 5.701 6 C 0.525 3.475 7 O -0.558 6.558 8 C -0.059 4.059 9 C -0.137 4.137 10 C -0.153 4.153 11 C -0.159 4.159 12 C -0.100 4.100 13 C -0.107 4.107 14 N -0.593 5.593 15 C 0.165 3.835 16 C -0.260 4.260 17 H 0.068 0.932 18 C 0.006 3.994 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.410 0.590 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.029 0.971 40 H 0.039 0.961 41 H -0.001 1.001 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.348 0.983 11.347 13.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.085 0.915 4 C -0.020 4.020 5 N -0.351 5.351 6 C 0.311 3.689 7 O -0.437 6.437 8 C -0.062 4.062 9 C -0.195 4.195 10 C -0.171 4.171 11 C -0.177 4.177 12 C -0.137 4.137 13 C -0.144 4.144 14 N -0.316 5.316 15 C 0.020 3.980 16 C -0.389 4.389 17 H 0.086 0.914 18 C -0.193 4.193 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.218 1.218 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.246 0.754 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.017 0.983 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.880 0.573 11.817 13.686 hybrid contribution 0.780 0.568 -1.287 1.608 sum 7.661 1.141 10.530 13.072 Atomic orbital electron populations 1.22186 0.97528 1.01343 1.00524 1.20619 0.92556 0.95485 0.86463 0.91458 1.21932 0.79844 1.01138 0.99045 1.45866 1.08103 1.58116 1.23012 1.20205 0.88872 0.77531 0.82318 1.90610 1.70009 1.49041 1.34031 1.20629 0.92290 0.95087 0.98225 1.21806 1.01541 1.00448 0.95681 1.23126 0.99260 0.96256 0.98492 1.23332 0.99888 0.99188 0.95285 1.21375 1.01300 0.93224 0.97840 1.22459 1.01033 0.97309 0.93638 1.43969 1.58219 1.07977 1.21405 1.20716 0.99731 0.83381 0.94144 1.19215 1.18841 1.11623 0.89265 0.91406 1.25021 0.98267 0.99458 0.96571 1.70078 1.35030 1.34189 1.15360 0.86256 0.81483 0.78188 0.81001 1.20310 1.21659 1.21789 0.92235 0.93185 0.94024 0.92216 0.92691 0.75382 0.92030 0.91114 0.91733 0.85210 0.85702 0.91307 0.90458 0.90768 0.89270 0.95238 0.94266 0.98285 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.19 37.16 0.34 -2.44 16 2 C 0.16 3.04 2.87 -67.93 -0.19 2.85 16 3 H 0.07 1.29 7.87 -51.93 -0.41 0.88 16 4 C 0.11 1.92 4.93 -4.04 -0.02 1.90 16 5 N -0.70 -12.36 5.25 -60.30 -0.32 -12.68 16 6 C 0.53 9.16 6.54 -10.99 -0.07 9.09 16 7 O -0.56 -11.24 15.46 5.56 0.09 -11.15 16 8 C -0.06 -0.83 0.74 -155.76 -0.12 -0.95 16 9 C -0.14 -1.85 8.40 37.16 0.31 -1.53 16 10 C -0.15 -1.95 9.37 -35.70 -0.33 -2.28 16 11 C -0.16 -1.83 10.78 -35.70 -0.38 -2.22 16 12 C -0.10 -1.16 6.81 -26.80 -0.18 -1.35 16 13 C -0.11 -1.36 6.03 -24.99 -0.15 -1.51 16 14 N -0.59 -13.67 2.28 -173.49 -0.40 -14.07 16 15 C 0.16 3.93 8.00 59.85 0.48 4.41 16 16 C -0.26 -6.56 9.31 -15.06 -0.14 -6.70 16 17 H 0.07 1.66 7.82 -52.49 -0.41 1.24 16 18 C 0.01 0.15 5.10 -17.43 -0.09 0.07 16 19 N -0.90 -25.37 10.72 55.49 0.59 -24.77 16 20 Si 0.90 20.82 29.57 -169.99 -5.03 15.80 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.05 0.90 7.67 -51.93 -0.40 0.51 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.16 6.86 -51.93 -0.36 0.80 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.41 7.30 7.20 -40.82 -0.29 7.01 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.04 7.45 -51.93 -0.39 0.65 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 38 H 0.09 1.28 6.95 -51.93 -0.36 0.92 16 39 H 0.03 0.77 7.34 -51.93 -0.38 0.39 16 40 H 0.04 1.01 7.35 -51.93 -0.38 0.62 16 41 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 42 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -29.06 335.06 -7.63 -36.69 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.07 Total: 5.82 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.55 Total: -0.68 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.12 Total: -51.52 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.06 -7.63 -36.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275904249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.070 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds