Wall clock time and date at job start Mon Mar 30 2020 19:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47203 * 2 1 4 4 C 1.52994 * 109.47574 * 239.99655 * 2 1 3 5 5 N 1.46497 * 109.47356 * 185.00259 * 4 2 1 6 6 C 1.34774 * 119.99943 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00490 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99746 * 179.97438 * 6 5 4 9 9 C 1.52995 * 110.34571 * 302.28583 * 8 6 5 10 10 C 1.51097 * 110.38812 * 64.69942 * 8 6 5 11 11 C 1.30525 * 111.10851 * 102.37396 * 10 8 6 12 12 C 1.51107 * 111.10411 * 359.97438 * 11 10 8 13 13 C 1.54634 * 104.72156 * 16.43914 * 12 11 10 14 14 N 1.46500 * 109.46832 * 119.99580 * 2 1 3 15 15 C 1.46503 * 120.00037 * 60.00145 * 14 2 1 16 16 C 1.36941 * 120.00214 * 240.00037 * 14 2 1 17 17 H 1.07995 * 119.99428 * 20.35372 * 16 14 2 18 18 C 1.38812 * 119.99944 * 200.34533 * 16 14 2 19 19 N 1.31618 * 119.99919 * 14.99981 * 18 16 14 20 20 Si 1.86805 * 119.99677 * 194.99308 * 18 16 14 21 21 H 1.48496 * 109.47018 * 85.00734 * 20 18 16 22 22 H 1.48500 * 109.46851 * 205.00840 * 20 18 16 23 23 H 1.48498 * 109.47154 * 325.00317 * 20 18 16 24 24 H 1.09001 * 109.47203 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47429 * 300.00013 * 1 2 3 26 26 H 1.09008 * 109.46826 * 60.00487 * 1 2 3 27 27 H 1.09005 * 109.47194 * 64.99770 * 4 2 1 28 28 H 1.09002 * 109.46990 * 305.00577 * 4 2 1 29 29 H 0.97001 * 119.99576 * 359.97438 * 5 4 2 30 30 H 1.08997 * 109.47219 * 297.71114 * 9 8 6 31 31 H 1.09005 * 109.47248 * 57.71715 * 9 8 6 32 32 H 1.09009 * 109.47223 * 177.71118 * 9 8 6 33 33 H 1.08000 * 124.45001 * 282.39587 * 10 8 6 34 34 H 1.08004 * 124.45121 * 180.27003 * 11 10 8 35 35 H 1.08997 * 110.38694 * 135.24877 * 12 11 10 36 36 H 1.08998 * 110.38550 * 257.51672 * 12 11 10 37 37 H 1.08994 * 111.04143 * 93.39791 * 13 12 11 38 38 H 1.09010 * 111.03627 * 217.29579 * 13 12 11 39 39 H 1.08998 * 109.46767 * 95.11728 * 15 14 2 40 40 H 1.08997 * 109.47428 * 215.11736 * 15 14 2 41 41 H 1.08997 * 109.47328 * 335.11649 * 15 14 2 42 42 H 0.97003 * 119.99137 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4284 -2.1909 7 8 3.5703 -1.8826 -3.1402 8 6 5.6752 -1.5360 -2.1307 9 6 6.3036 -0.1464 -2.0083 10 6 6.0942 -2.4098 -0.9715 11 6 6.4349 -3.6016 -1.3803 12 6 6.2993 -3.7216 -2.8805 13 6 6.2130 -2.2625 -3.3852 14 7 2.0183 -0.6905 1.1962 15 6 1.6643 -2.0931 1.4282 16 6 2.8056 -0.0250 2.0977 17 1 2.8039 1.0547 2.1222 18 6 3.6055 -0.7382 2.9799 19 7 3.8405 -2.0159 2.7693 20 14 4.3484 0.1158 4.4660 21 1 3.3661 0.1153 5.5796 22 1 5.5761 -0.6050 4.8886 23 1 4.6938 1.5157 4.1111 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.7518 -0.1584 -2.1369 28 1 1.6054 -1.7198 -1.2950 29 1 3.9824 -0.4621 -0.4317 30 1 6.0584 0.4423 -2.8922 31 1 5.9140 0.3516 -1.1204 32 1 7.3861 -0.2432 -1.9250 33 1 6.1095 -2.0904 0.0601 34 1 6.7655 -4.3990 -0.7311 35 1 7.1731 -4.2182 -3.3023 36 1 5.3920 -4.2683 -3.1372 37 1 7.1972 -1.8857 -3.6632 38 1 5.5142 -2.1771 -4.2175 39 1 2.4604 -2.7356 1.0520 40 1 1.5346 -2.2632 2.4969 41 1 0.7347 -2.3241 0.9081 42 1 4.3992 -2.5143 3.3862 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275904252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:27:53 Heat of formation + Delta-G solvation = -4.635739 kcal Electronic energy + Delta-G solvation = -21665.072660 eV Core-core repulsion = 18645.886622 eV Total energy + Delta-G solvation = -3019.186038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.10429 -37.50408 -36.39407 -33.66015 -32.17643 -31.03956 -29.28799 -28.60633 -26.05244 -25.83194 -24.57016 -23.08026 -21.49287 -19.56473 -19.21426 -18.18743 -16.93311 -16.59232 -15.61959 -15.20120 -15.01987 -14.44638 -14.13344 -13.81985 -13.22041 -12.91641 -12.77508 -12.63973 -12.23895 -12.08234 -11.96440 -11.64815 -11.63410 -11.50109 -11.13140 -10.94023 -10.82885 -10.76530 -10.71100 -10.51132 -10.41669 -10.29334 -9.86396 -9.79596 -9.49418 -8.60971 -8.48432 -8.27894 -6.84991 -5.77200 -3.22504 2.52392 3.29587 3.33412 3.40564 3.41742 3.92753 4.43350 4.75899 4.89442 5.16244 5.34778 5.37676 5.40357 5.50654 5.60968 5.64926 5.75914 5.90819 5.96165 5.99517 6.03002 6.09893 6.16686 6.18164 6.27873 6.31253 6.38129 6.40775 6.54776 6.69798 6.80561 6.86901 6.90932 7.18948 7.21765 7.38697 7.71053 7.77926 8.30290 8.32237 8.89587 9.17636 9.81562 10.30681 11.25515 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.007558 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.970042 B = 3703.598066 C = 4643.460413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.067 0.933 4 C 0.107 3.893 5 N -0.696 5.696 6 C 0.527 3.473 7 O -0.563 6.563 8 C -0.059 4.059 9 C -0.135 4.135 10 C -0.140 4.140 11 C -0.166 4.166 12 C -0.098 4.098 13 C -0.106 4.106 14 N -0.593 5.593 15 C 0.164 3.836 16 C -0.260 4.260 17 H 0.068 0.932 18 C 0.006 3.994 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.414 0.586 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.030 0.970 40 H 0.040 0.960 41 H -0.002 1.002 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 1.204 -8.249 8.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.019 4.019 5 N -0.346 5.346 6 C 0.312 3.688 7 O -0.443 6.443 8 C -0.062 4.062 9 C -0.192 4.192 10 C -0.158 4.158 11 C -0.184 4.184 12 C -0.135 4.135 13 C -0.144 4.144 14 N -0.316 5.316 15 C 0.019 3.981 16 C -0.390 4.390 17 H 0.086 0.914 18 C -0.193 4.193 19 N -0.543 5.543 20 Si 0.730 3.270 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.207 1.207 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.251 0.749 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.017 0.983 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.031 0.776 -8.787 9.327 hybrid contribution 0.583 0.402 1.489 1.649 sum 3.614 1.178 -7.298 8.229 Atomic orbital electron populations 1.22174 0.97553 1.01423 1.00603 1.20635 0.92579 0.95832 0.86024 0.91435 1.21921 0.80424 1.00821 0.98766 1.45812 1.07841 1.57884 1.23027 1.20186 0.88982 0.77340 0.82283 1.90591 1.70080 1.49260 1.34399 1.20608 0.92528 0.97141 0.95888 1.21781 1.00867 0.94231 1.02347 1.23179 0.99023 0.95228 0.98415 1.23264 1.01151 0.97531 0.96492 1.21341 1.01564 0.97240 0.93374 1.22437 1.00816 0.94369 0.96780 1.43946 1.57744 1.09635 1.20289 1.20742 0.94123 0.84482 0.98714 1.19208 1.17784 0.90762 1.11206 0.91442 1.24919 0.98139 0.96127 1.00128 1.70108 1.40022 1.07547 1.36623 0.86367 0.78323 0.78718 0.83639 1.21619 1.21858 1.20660 0.92991 0.92451 0.93602 0.93055 0.92597 0.74852 0.92358 0.91630 0.91673 0.84520 0.85787 0.91586 0.90677 0.90977 0.89480 0.95190 0.94091 0.98347 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.18 37.16 0.34 -2.29 16 2 C 0.16 3.03 2.87 -67.93 -0.19 2.83 16 3 H 0.07 1.28 7.85 -51.93 -0.41 0.87 16 4 C 0.11 2.03 4.97 -4.05 -0.02 2.01 16 5 N -0.70 -13.52 5.25 -60.30 -0.32 -13.83 16 6 C 0.53 10.13 6.54 -10.99 -0.07 10.05 16 7 O -0.56 -12.19 15.46 5.56 0.09 -12.10 16 8 C -0.06 -0.94 0.74 -155.76 -0.12 -1.05 16 9 C -0.13 -1.85 8.41 37.16 0.31 -1.53 16 10 C -0.14 -2.36 9.37 -35.70 -0.33 -2.70 16 11 C -0.17 -2.57 10.78 -35.69 -0.38 -2.96 16 12 C -0.10 -1.40 6.81 -26.82 -0.18 -1.58 16 13 C -0.11 -1.53 6.03 -25.02 -0.15 -1.68 16 14 N -0.59 -13.60 2.29 -173.49 -0.40 -14.00 16 15 C 0.16 3.90 8.11 59.85 0.49 4.38 16 16 C -0.26 -6.51 9.34 -15.06 -0.14 -6.65 16 17 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 18 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 19 N -0.90 -24.14 10.67 55.49 0.59 -23.55 16 20 Si 0.90 20.67 29.58 -169.99 -5.03 15.64 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.05 0.88 6.67 -51.93 -0.35 0.53 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.15 7.84 -51.93 -0.41 0.75 16 29 H 0.41 8.43 7.20 -40.82 -0.29 8.14 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.94 7.45 -51.93 -0.39 0.55 16 32 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.14 2.52 8.06 -52.49 -0.42 2.09 16 34 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.87 7.91 -51.93 -0.41 0.46 16 38 H 0.09 1.35 6.94 -51.92 -0.36 0.99 16 39 H 0.03 0.78 7.40 -51.93 -0.38 0.40 16 40 H 0.04 1.05 7.21 -51.93 -0.37 0.68 16 41 H 0.00 -0.04 6.44 -51.93 -0.33 -0.38 16 42 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -27.95 334.90 -7.62 -35.57 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.06 Total: 8.31 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.54 Total: -1.09 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.12 Total: -51.38 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.95 -7.62 -35.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275904252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.936 kcal (2) G-P(sol) polarization free energy of solvation -27.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds