Wall clock time and date at job start Mon Mar 30 2020 19:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46719 * 2 1 4 4 C 1.52998 * 109.47514 * 120.00338 * 2 1 3 5 5 N 1.46498 * 109.47205 * 175.00090 * 4 2 1 6 6 C 1.34775 * 119.99877 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00189 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99979 * 180.27417 * 6 5 4 9 9 H 1.08995 * 115.55719 * 325.30435 * 8 6 5 10 10 C 1.53127 * 117.51161 * 111.04374 * 8 6 5 11 11 C 1.52463 * 117.51273 * 179.57067 * 8 6 5 12 12 C 1.53257 * 128.58428 * 134.95240 * 11 8 6 13 13 C 1.53888 * 86.87983 * 194.88561 * 12 11 8 14 14 C 1.53258 * 128.58617 * 10.14979 * 11 8 6 15 15 N 1.46504 * 109.46804 * 240.00093 * 2 1 3 16 16 C 1.46493 * 120.00224 * 299.99555 * 15 2 1 17 17 C 1.36938 * 119.99667 * 119.99822 * 15 2 1 18 18 H 1.08000 * 120.00584 * 22.82133 * 17 15 2 19 19 C 1.38811 * 120.00096 * 202.81732 * 17 15 2 20 20 N 1.31622 * 119.99624 * 11.59354 * 19 17 15 21 21 Si 1.86795 * 120.00482 * 191.58798 * 19 17 15 22 22 H 1.48507 * 109.46974 * 59.99997 * 21 19 17 23 23 H 1.48494 * 109.47529 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47187 * 300.00502 * 21 19 17 25 25 H 1.09000 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47134 * 299.99764 * 1 2 3 27 27 H 1.08998 * 109.47564 * 59.99921 * 1 2 3 28 28 H 1.08999 * 109.47195 * 54.99915 * 4 2 1 29 29 H 1.09005 * 109.46726 * 294.99707 * 4 2 1 30 30 H 0.96994 * 119.99893 * 0.02562 * 5 4 2 31 31 H 1.08997 * 117.50949 * 214.89916 * 10 8 6 32 32 H 1.09001 * 117.51234 * 359.95631 * 10 8 6 33 33 H 1.08999 * 113.64526 * 309.38631 * 12 11 8 34 34 H 1.09000 * 113.64479 * 80.39327 * 12 11 8 35 35 H 1.09000 * 113.59005 * 270.38867 * 13 12 11 36 36 H 1.09008 * 113.58264 * 139.57253 * 13 12 11 37 37 H 1.09002 * 113.64632 * 279.61344 * 14 11 8 38 38 H 1.09001 * 113.64583 * 50.52270 * 14 11 8 39 39 H 1.09005 * 109.46960 * 93.85230 * 16 15 2 40 40 H 1.09001 * 109.47312 * 213.85038 * 16 15 2 41 41 H 1.09003 * 109.47397 * 333.85325 * 16 15 2 42 42 H 0.97002 * 119.99728 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1732 -1.4283 2.1910 7 8 3.5702 -1.8825 3.1402 8 6 5.6756 -1.5309 2.1335 9 1 6.0998 -1.6684 1.1390 10 6 6.4802 -0.7003 3.1372 11 6 6.3800 -2.2141 3.3004 12 6 7.5032 -3.2561 3.2611 13 6 7.1826 -3.5342 4.7403 14 6 5.7634 -3.0130 4.4538 15 7 2.0183 -0.6906 -1.1962 16 6 1.6644 -2.0931 -1.4281 17 6 2.8055 -0.0251 -2.0976 18 1 3.3665 0.8438 -1.7866 19 6 2.8825 -0.4671 -3.4112 20 7 2.0365 -1.3745 -3.8508 21 14 4.1867 0.2257 -4.5550 22 1 5.5342 -0.0608 -4.0004 23 1 4.0573 -0.4050 -5.8931 24 1 4.0053 1.6942 -4.6807 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6055 -1.7198 1.2950 29 1 1.7518 -0.1583 2.1369 30 1 3.9824 -0.4621 0.4318 31 1 7.4339 -0.2920 2.8029 32 1 5.9227 -0.0792 3.8384 33 1 7.2946 -4.0992 2.6025 34 1 8.4923 -2.8268 3.1014 35 1 7.7453 -2.9089 5.4336 36 1 7.2143 -4.5919 5.0020 37 1 5.3577 -2.3889 5.2501 38 1 5.0693 -3.7874 4.1273 39 1 0.7756 -2.1444 -2.0570 40 1 2.4916 -2.5990 -1.9261 41 1 1.4628 -2.5796 -0.4737 42 1 2.0901 -1.6832 -4.7688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275944443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:07 Heat of formation + Delta-G solvation = 12.188365 kcal Electronic energy + Delta-G solvation = -20782.813139 eV Core-core repulsion = 17764.356649 eV Total energy + Delta-G solvation = -3018.456490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27232 -39.54597 -38.24767 -35.35776 -34.59031 -33.61346 -31.15538 -28.02975 -27.66052 -26.55022 -25.10125 -24.22556 -23.87499 -21.21019 -20.75297 -19.26370 -18.85922 -17.96652 -17.17230 -17.02245 -16.21142 -16.05904 -15.90306 -15.56963 -15.29382 -14.60801 -14.52605 -14.01857 -13.62300 -13.56523 -13.20773 -13.06499 -12.94786 -12.86525 -12.63040 -12.52521 -12.39660 -12.32118 -12.28694 -12.12768 -11.79270 -11.52589 -11.25396 -11.00047 -10.77245 -10.61373 -10.53326 -9.90381 -8.77806 -7.78754 -5.27211 1.50933 1.51834 1.58128 1.59420 2.32093 2.53542 2.80916 3.36759 3.48013 3.64055 3.72820 3.82483 3.92257 3.98906 4.04111 4.22634 4.36022 4.53312 4.58086 4.65838 4.72024 4.74918 4.80370 4.86421 4.90936 4.92386 5.02310 5.06065 5.10423 5.18474 5.22009 5.35978 5.40984 5.41930 5.53939 5.62278 5.68686 5.73199 6.35421 6.71620 7.17656 7.35493 7.88837 8.35103 9.25009 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.005085 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.948846 B = 5505.334337 C = 6365.550988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 H 0.075 0.925 4 C 0.118 3.882 5 N -0.705 5.705 6 C 0.534 3.466 7 O -0.584 6.584 8 C -0.195 4.195 9 H 0.129 0.871 10 C -0.102 4.102 11 C -0.136 4.136 12 C -0.094 4.094 13 C -0.128 4.128 14 C -0.091 4.091 15 N -0.603 5.603 16 C 0.188 3.812 17 C -0.258 4.258 18 H 0.080 0.920 19 C -0.051 4.051 20 N -0.940 5.940 21 Si 0.966 3.034 22 H -0.275 1.275 23 H -0.303 1.303 24 H -0.276 1.276 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.409 0.591 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.000 1.000 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.772 0.531 14.105 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.093 0.907 4 C -0.008 4.008 5 N -0.354 5.354 6 C 0.322 3.678 7 O -0.465 6.465 8 C -0.216 4.216 9 H 0.147 0.853 10 C -0.140 4.140 11 C -0.137 4.137 12 C -0.131 4.131 13 C -0.165 4.165 14 C -0.129 4.129 15 N -0.326 5.326 16 C 0.043 3.957 17 C -0.388 4.388 18 H 0.098 0.902 19 C -0.246 4.246 20 N -0.587 5.587 21 Si 0.795 3.205 22 H -0.201 1.201 23 H -0.230 1.230 24 H -0.202 1.202 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.245 0.755 31 H 0.150 0.850 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.018 0.982 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.310 0.150 14.597 17.314 hybrid contribution 0.080 0.215 -1.700 1.715 sum 9.390 0.365 12.897 15.958 Atomic orbital electron populations 1.22070 0.96167 1.01170 1.01382 1.20779 0.93553 0.95510 0.85177 0.90727 1.21729 0.80188 1.00118 0.98724 1.45894 1.07911 1.58307 1.23301 1.20120 0.89346 0.76750 0.81616 1.90613 1.71004 1.49861 1.35056 1.22170 0.90112 1.10973 0.98321 0.85346 1.22884 1.01124 0.91523 0.98426 1.22541 0.99844 0.94899 0.96421 1.22514 0.96777 0.96485 0.97286 1.22783 0.95464 1.01845 0.96405 1.22287 0.96672 0.98130 0.95772 1.44102 1.58374 1.07860 1.22250 1.20337 0.97360 0.84161 0.93861 1.19553 1.18690 1.11018 0.89526 0.90197 1.25765 1.00438 1.00129 0.98300 1.70244 1.38032 1.34886 1.15554 0.85357 0.79545 0.77895 0.77696 1.20107 1.22967 1.20229 0.93914 0.90511 0.93933 0.93901 0.91140 0.75457 0.85009 0.88663 0.89953 0.89370 0.88748 0.90375 0.92570 0.91784 0.98213 0.96672 0.96697 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.19 71.98 0.66 -4.47 16 2 C 0.16 5.92 2.87 44.99 0.13 6.05 16 3 H 0.07 2.73 7.86 -2.39 -0.02 2.71 16 4 C 0.12 4.16 4.93 86.38 0.43 4.59 16 5 N -0.70 -24.39 5.39 -463.06 -2.49 -26.88 16 6 C 0.53 18.30 7.61 87.66 0.67 18.97 16 7 O -0.58 -23.18 15.14 -3.04 -0.05 -23.23 16 8 C -0.19 -5.25 6.19 -11.68 -0.07 -5.32 16 9 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 10 C -0.10 -2.14 10.24 30.50 0.31 -1.83 16 11 C -0.14 -3.20 2.88 -52.32 -0.15 -3.35 16 12 C -0.09 -1.71 8.10 30.98 0.25 -1.46 16 13 C -0.13 -2.22 8.08 31.19 0.25 -1.97 16 14 C -0.09 -2.26 6.47 30.98 0.20 -2.06 16 15 N -0.60 -28.09 2.29 -702.78 -1.61 -29.70 16 16 C 0.19 9.27 8.00 127.77 1.02 10.29 16 17 C -0.26 -13.03 9.33 84.03 0.78 -12.25 16 18 H 0.08 3.79 7.81 -2.91 -0.02 3.76 16 19 C -0.05 -2.74 5.12 84.86 0.43 -2.31 16 20 N -0.94 -54.49 10.63 21.65 0.23 -54.26 16 21 Si 0.97 43.15 29.57 68.60 2.03 45.18 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 25 H 0.04 1.52 7.67 -2.39 -0.02 1.50 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.66 6.86 -2.39 -0.02 1.64 16 29 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.41 14.29 7.89 -92.71 -0.73 13.56 16 31 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 39 H 0.00 -0.02 7.43 -2.38 -0.02 -0.04 16 40 H 0.01 0.79 7.20 -2.39 -0.02 0.78 16 41 H 0.01 0.66 6.53 -2.39 -0.02 0.64 16 42 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -63.20 338.53 3.29 -59.92 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.26 Total: 24.09 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 4.92 Total: 4.89 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -3.87 Total: -110.84 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -63.20 3.29 -59.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275944443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.106 kcal (2) G-P(sol) polarization free energy of solvation -63.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds