Wall clock time and date at job start Mon Mar 30 2020 19:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33002 * 120.00028 * 2 1 4 4 C 1.47094 * 119.99880 * 172.82918 * 3 2 1 5 5 O 1.21612 * 120.00386 * 352.67894 * 4 3 2 6 6 N 1.34781 * 119.99604 * 172.40502 * 4 3 2 7 7 C 1.46493 * 120.00183 * 0.02562 * 6 4 3 8 8 C 1.46501 * 119.99672 * 179.97438 * 6 4 3 9 9 C 1.53005 * 109.47025 * 90.00324 * 8 6 4 10 10 H 1.08995 * 109.47396 * 64.99481 * 9 8 6 11 11 C 1.53000 * 109.47201 * 185.00020 * 9 8 6 12 12 N 1.46499 * 109.47061 * 304.99699 * 9 8 6 13 13 C 1.36936 * 120.00472 * 154.99901 * 12 9 8 14 14 H 1.08002 * 119.99381 * 0.02562 * 13 12 9 15 15 C 1.38803 * 120.00457 * 179.97438 * 13 12 9 16 16 N 1.31621 * 120.00374 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00123 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47289 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47258 * 120.00227 * 17 15 13 20 20 H 1.48499 * 109.47324 * 240.00217 * 17 15 13 21 21 C 1.50696 * 120.00004 * 179.97438 * 2 1 3 22 22 C 1.52996 * 117.50057 * 0.06401 * 21 2 1 23 23 C 1.52998 * 117.49911 * 291.40398 * 21 2 1 24 24 H 1.09003 * 109.47141 * 89.99766 * 1 2 3 25 25 H 1.08992 * 109.47319 * 210.00110 * 1 2 3 26 26 H 1.09001 * 109.46919 * 330.00599 * 1 2 3 27 27 H 1.08003 * 119.99855 * 352.82436 * 3 2 1 28 28 H 1.08998 * 109.47095 * 90.00134 * 7 6 4 29 29 H 1.09007 * 109.46992 * 209.99905 * 7 6 4 30 30 H 1.09001 * 109.47169 * 329.99647 * 7 6 4 31 31 H 1.08995 * 109.47147 * 209.99990 * 8 6 4 32 32 H 1.08996 * 109.47345 * 330.00215 * 8 6 4 33 33 H 1.09003 * 109.47290 * 59.99730 * 11 9 8 34 34 H 1.08996 * 109.47581 * 180.02562 * 11 9 8 35 35 H 1.09007 * 109.46996 * 299.99995 * 11 9 8 36 36 H 0.97007 * 119.99825 * 334.99856 * 12 9 8 37 37 H 0.96998 * 120.00279 * 179.97438 * 16 15 13 38 38 H 1.09000 * 115.54961 * 145.73906 * 21 2 1 39 39 H 1.09004 * 117.49837 * 0.02562 * 22 21 2 40 40 H 1.08993 * 117.49901 * 145.02041 * 22 21 2 41 41 H 1.08999 * 117.50413 * 214.97953 * 23 21 2 42 42 H 1.09004 * 117.49940 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6343 1.1568 0.1590 5 8 4.2208 0.1247 0.4231 6 7 4.3248 2.3042 0.0066 7 6 3.6190 3.5464 -0.3169 8 6 5.7812 2.3092 0.1655 9 6 6.4426 2.0312 -1.1859 10 1 6.2246 2.8493 -1.8723 11 6 7.9564 1.9128 -0.9980 12 7 5.9196 0.7787 -1.7371 13 6 5.9385 0.5651 -3.0896 14 1 6.3394 1.3199 -3.7498 15 6 5.4434 -0.6218 -3.6118 16 7 4.9552 -1.5419 -2.8072 17 14 5.4685 -0.9128 -5.4568 18 1 6.0634 0.2663 -6.1359 19 1 6.2818 -2.1186 -5.7568 20 1 4.0810 -1.1177 -5.9447 21 6 2.2605 -1.3051 0.0006 22 6 1.4385 -2.5954 -0.0004 23 6 2.1848 -2.1639 1.2645 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6383 2.0835 -0.1168 28 1 3.3347 4.0534 0.6051 29 1 4.2727 4.1942 -0.9011 30 1 2.7245 3.3159 -0.8956 31 1 6.1031 3.2832 0.5340 32 1 6.0717 1.5371 0.8779 33 1 8.1745 1.0946 -0.3116 34 1 8.4278 1.7152 -1.9607 35 1 8.3457 2.8447 -0.5878 36 1 5.5598 0.1007 -1.1440 37 1 4.6088 -2.3712 -3.1721 38 1 3.1994 -1.3061 -0.5530 39 1 0.3526 -2.5004 -0.0018 40 1 1.8367 -3.4454 -0.5543 41 1 3.0737 -2.7303 1.5422 42 1 1.5903 -1.7848 2.0958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277766735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:11 Heat of formation + Delta-G solvation = 24.701725 kcal Electronic energy + Delta-G solvation = -21576.779838 eV Core-core repulsion = 18558.865968 eV Total energy + Delta-G solvation = -3017.913870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.46909 -37.41584 -35.65242 -34.21009 -32.91672 -31.80970 -28.68131 -27.92515 -26.78092 -25.24705 -23.53267 -22.57670 -21.81441 -20.17045 -19.13433 -17.61767 -17.17973 -16.43565 -15.74107 -15.02137 -14.68154 -14.54674 -13.87125 -13.63387 -13.27205 -12.98004 -12.81168 -12.54820 -12.36847 -12.13650 -12.09354 -11.94852 -11.72883 -11.31346 -11.11462 -11.02004 -10.80496 -10.75140 -10.57856 -10.29976 -10.19647 -9.92911 -9.78011 -9.47571 -8.78268 -8.70383 -8.39131 -7.86683 -6.72774 -5.56610 -2.84189 1.87512 3.49622 3.55203 3.57273 3.63452 4.05674 4.52331 4.71475 4.98793 5.08125 5.35673 5.46489 5.52730 5.53636 5.60440 5.62607 5.70491 5.71395 5.76303 5.88169 5.91173 5.98649 6.01855 6.10021 6.11471 6.20000 6.33859 6.37318 6.49525 6.61600 6.74333 6.81228 6.83438 6.94139 7.09060 7.30562 7.36188 7.83928 8.10271 8.61464 9.03291 9.73888 10.37795 10.77877 11.64094 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.008790 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.291485 B = 3184.681049 C = 4432.064244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.007 4.007 3 C -0.223 4.223 4 C 0.554 3.446 5 O -0.512 6.512 6 N -0.610 5.610 7 C 0.087 3.913 8 C 0.112 3.888 9 C 0.154 3.846 10 H 0.041 0.959 11 C -0.163 4.163 12 N -0.720 5.720 13 C -0.235 4.235 14 H 0.063 0.937 15 C -0.012 4.012 16 N -0.918 5.918 17 Si 0.897 3.103 18 H -0.283 1.283 19 H -0.294 1.294 20 H -0.294 1.294 21 C -0.108 4.108 22 C -0.193 4.193 23 C -0.160 4.160 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.034 0.966 36 H 0.399 0.601 37 H 0.250 0.750 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 7.511 8.393 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.008 4.008 3 C -0.244 4.244 4 C 0.345 3.655 5 O -0.389 6.389 6 N -0.343 5.343 7 C -0.057 4.057 8 C -0.012 4.012 9 C 0.042 3.958 10 H 0.059 0.941 11 C -0.224 4.224 12 N -0.366 5.366 13 C -0.367 4.367 14 H 0.081 0.919 15 C -0.208 4.208 16 N -0.567 5.567 17 Si 0.729 3.271 18 H -0.209 1.209 19 H -0.221 1.221 20 H -0.222 1.222 21 C -0.125 4.125 22 C -0.230 4.230 23 C -0.197 4.197 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.238 0.762 37 H 0.060 0.940 38 H 0.178 0.822 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.244 6.964 8.376 13.082 hybrid contribution -0.073 -0.174 -1.157 1.172 sum -7.317 6.790 7.219 12.319 Atomic orbital electron populations 1.20978 0.92012 1.02523 1.02688 1.21785 0.94565 0.94024 0.90475 1.22343 0.93974 0.98005 1.10086 1.18286 0.87436 0.82875 0.76891 1.90730 1.70651 1.30358 1.47151 1.47459 1.07037 1.08438 1.71401 1.21652 0.97780 0.86697 0.99584 1.21769 0.79365 1.01083 0.98950 1.20636 0.91370 0.91246 0.92498 0.94120 1.22412 0.99328 0.99215 1.01443 1.42721 1.72883 1.15984 1.05001 1.19238 1.33324 1.00231 0.83864 0.91873 1.24670 1.02206 0.97096 0.96861 1.69705 1.46743 1.07814 1.32412 0.86270 0.76974 0.77446 0.86431 1.20898 1.22146 1.22175 1.21699 1.01833 0.86889 1.02092 1.23059 0.97954 0.99848 1.02131 1.22719 1.02238 1.03636 0.91125 0.90616 0.91109 0.91561 0.86231 0.93668 0.91614 0.91353 0.91496 0.90405 0.93411 0.92771 0.94720 0.76198 0.93996 0.82191 0.89512 0.88811 0.88845 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.53 36.01 0.34 -1.20 16 2 C -0.01 -0.11 5.80 -101.17 -0.59 -0.70 16 3 C -0.22 -3.83 8.72 -37.81 -0.33 -4.16 16 4 C 0.55 11.18 6.82 -12.67 -0.09 11.09 16 5 O -0.51 -12.06 10.70 5.27 0.06 -12.00 16 6 N -0.61 -10.81 2.77 -182.98 -0.51 -11.32 16 7 C 0.09 1.15 10.10 59.84 0.60 1.75 16 8 C 0.11 1.99 5.14 -4.04 -0.02 1.97 16 9 C 0.15 3.22 3.20 -67.93 -0.22 3.00 16 10 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 11 C -0.16 -3.09 9.49 37.16 0.35 -2.74 16 12 N -0.72 -18.98 4.52 -53.43 -0.24 -19.22 16 13 C -0.23 -6.76 9.93 -15.06 -0.15 -6.91 16 14 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 16 N -0.92 -28.21 13.06 55.49 0.72 -27.49 16 17 Si 0.90 23.10 29.55 -169.99 -5.02 18.08 16 18 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 20 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 21 C -0.11 -2.08 4.25 -91.78 -0.39 -2.47 16 22 C -0.19 -3.13 9.80 -26.70 -0.26 -3.39 16 23 C -0.16 -2.66 10.24 -26.70 -0.27 -2.94 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.80 6.30 -51.93 -0.33 0.47 16 26 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 27 H 0.12 1.65 6.37 -52.48 -0.33 1.32 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.81 8.07 -51.92 -0.42 0.39 16 30 H 0.07 0.88 6.20 -51.93 -0.32 0.56 16 31 H 0.07 0.94 8.07 -51.93 -0.42 0.53 16 32 H 0.08 1.50 7.42 -51.93 -0.39 1.12 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.40 11.34 5.00 -40.82 -0.20 11.14 16 37 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.16 4.00 6.40 -51.93 -0.33 3.66 16 39 H 0.09 1.19 6.27 -51.93 -0.33 0.86 16 40 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -33.13 337.99 -7.85 -40.98 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -6.84 Total: 13.02 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.11 Total: -7.15 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.02 Total: -58.03 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.06 Total: -12.00 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.13 -7.85 -40.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277766735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.680 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds