Wall clock time and date at job start Mon Mar 30 2020 19:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33002 * 120.00028 * 2 1 4 4 C 1.47094 * 119.99880 * 172.82918 * 3 2 1 5 5 O 1.21612 * 120.00386 * 352.67894 * 4 3 2 6 6 N 1.34781 * 119.99604 * 172.40502 * 4 3 2 7 7 C 1.46493 * 120.00183 * 0.02562 * 6 4 3 8 8 C 1.46501 * 119.99672 * 179.97438 * 6 4 3 9 9 C 1.53005 * 109.47025 * 90.00324 * 8 6 4 10 10 H 1.08995 * 109.47396 * 64.99481 * 9 8 6 11 11 C 1.53000 * 109.47201 * 185.00020 * 9 8 6 12 12 N 1.46499 * 109.47061 * 304.99699 * 9 8 6 13 13 C 1.36936 * 120.00472 * 154.99901 * 12 9 8 14 14 H 1.08002 * 119.99381 * 0.02562 * 13 12 9 15 15 C 1.38803 * 120.00457 * 179.97438 * 13 12 9 16 16 N 1.31621 * 120.00374 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00123 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47289 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47258 * 120.00227 * 17 15 13 20 20 H 1.48499 * 109.47324 * 240.00217 * 17 15 13 21 21 C 1.50696 * 120.00004 * 179.97438 * 2 1 3 22 22 C 1.52996 * 117.50057 * 0.06401 * 21 2 1 23 23 C 1.52998 * 117.49911 * 291.40398 * 21 2 1 24 24 H 1.09003 * 109.47141 * 89.99766 * 1 2 3 25 25 H 1.08992 * 109.47319 * 210.00110 * 1 2 3 26 26 H 1.09001 * 109.46919 * 330.00599 * 1 2 3 27 27 H 1.08003 * 119.99855 * 352.82436 * 3 2 1 28 28 H 1.08998 * 109.47095 * 90.00134 * 7 6 4 29 29 H 1.09007 * 109.46992 * 209.99905 * 7 6 4 30 30 H 1.09001 * 109.47169 * 329.99647 * 7 6 4 31 31 H 1.08995 * 109.47147 * 209.99990 * 8 6 4 32 32 H 1.08996 * 109.47345 * 330.00215 * 8 6 4 33 33 H 1.09003 * 109.47290 * 59.99730 * 11 9 8 34 34 H 1.08996 * 109.47581 * 180.02562 * 11 9 8 35 35 H 1.09007 * 109.46996 * 299.99995 * 11 9 8 36 36 H 0.97007 * 119.99825 * 334.99856 * 12 9 8 37 37 H 0.96998 * 120.00279 * 179.97438 * 16 15 13 38 38 H 1.09000 * 115.54961 * 145.73906 * 21 2 1 39 39 H 1.09004 * 117.49837 * 0.02562 * 22 21 2 40 40 H 1.08993 * 117.49901 * 145.02041 * 22 21 2 41 41 H 1.08999 * 117.50413 * 214.97953 * 23 21 2 42 42 H 1.09004 * 117.49940 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6343 1.1568 0.1590 5 8 4.2208 0.1247 0.4231 6 7 4.3248 2.3042 0.0066 7 6 3.6190 3.5464 -0.3169 8 6 5.7812 2.3092 0.1655 9 6 6.4426 2.0312 -1.1859 10 1 6.2246 2.8493 -1.8723 11 6 7.9564 1.9128 -0.9980 12 7 5.9196 0.7787 -1.7371 13 6 5.9385 0.5651 -3.0896 14 1 6.3394 1.3199 -3.7498 15 6 5.4434 -0.6218 -3.6118 16 7 4.9552 -1.5419 -2.8072 17 14 5.4685 -0.9128 -5.4568 18 1 6.0634 0.2663 -6.1359 19 1 6.2818 -2.1186 -5.7568 20 1 4.0810 -1.1177 -5.9447 21 6 2.2605 -1.3051 0.0006 22 6 1.4385 -2.5954 -0.0004 23 6 2.1848 -2.1639 1.2645 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6383 2.0835 -0.1168 28 1 3.3347 4.0534 0.6051 29 1 4.2727 4.1942 -0.9011 30 1 2.7245 3.3159 -0.8956 31 1 6.1031 3.2832 0.5340 32 1 6.0717 1.5371 0.8779 33 1 8.1745 1.0946 -0.3116 34 1 8.4278 1.7152 -1.9607 35 1 8.3457 2.8447 -0.5878 36 1 5.5598 0.1007 -1.1440 37 1 4.6088 -2.3712 -3.1721 38 1 3.1994 -1.3061 -0.5530 39 1 0.3526 -2.5004 -0.0018 40 1 1.8367 -3.4454 -0.5543 41 1 3.0737 -2.7303 1.5422 42 1 1.5903 -1.7848 2.0958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277766735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:10 Heat of formation + Delta-G solvation = 4.007728 kcal Electronic energy + Delta-G solvation = -21577.677197 eV Core-core repulsion = 18558.865968 eV Total energy + Delta-G solvation = -3018.811229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89503 -38.78028 -37.30883 -35.82774 -34.27116 -33.70561 -30.59283 -29.18593 -27.99212 -26.57733 -25.63181 -23.96407 -23.14207 -21.76584 -20.60845 -19.29844 -18.84810 -17.90216 -17.12834 -16.75297 -16.28738 -16.02678 -15.59833 -15.24220 -14.66517 -14.29410 -14.13538 -13.93245 -13.82512 -13.57662 -13.49774 -13.17573 -13.04872 -12.94260 -12.83443 -12.69294 -12.36587 -12.34355 -12.13185 -12.05524 -11.80614 -11.57717 -11.51324 -11.13146 -10.91697 -10.19689 -9.72217 -9.25337 -8.83912 -7.79936 -5.08225 0.57470 1.42508 1.43733 1.52952 2.30537 2.58687 2.66675 3.17265 3.48154 3.72039 3.86730 4.03451 4.14854 4.22920 4.25817 4.39642 4.40789 4.49752 4.55550 4.62913 4.70312 4.73315 4.79891 4.81629 4.84578 4.95414 4.98988 5.00989 5.09922 5.12107 5.28580 5.30235 5.49754 5.52569 5.55833 5.57732 5.86703 5.93566 6.38167 6.75009 7.44644 7.61695 8.31929 8.57674 9.40341 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.008790 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.291485 B = 3184.681049 C = 4432.064244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.007 4.007 3 C -0.240 4.240 4 C 0.535 3.465 5 O -0.560 6.560 6 N -0.614 5.614 7 C 0.080 3.920 8 C 0.118 3.882 9 C 0.145 3.855 10 H 0.043 0.957 11 C -0.153 4.153 12 N -0.736 5.736 13 C -0.236 4.236 14 H 0.066 0.934 15 C -0.074 4.074 16 N -0.949 5.949 17 Si 0.961 3.039 18 H -0.269 1.269 19 H -0.299 1.299 20 H -0.296 1.296 21 C -0.137 4.137 22 C -0.175 4.175 23 C -0.151 4.151 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.387 0.613 37 H 0.242 0.758 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 9.854 8.687 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.009 4.009 3 C -0.260 4.260 4 C 0.327 3.673 5 O -0.440 6.440 6 N -0.346 5.346 7 C -0.062 4.062 8 C -0.006 4.006 9 C 0.035 3.965 10 H 0.061 0.939 11 C -0.213 4.213 12 N -0.381 5.381 13 C -0.369 4.369 14 H 0.084 0.916 15 C -0.267 4.267 16 N -0.600 5.600 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.227 1.227 20 H -0.223 1.223 21 C -0.156 4.156 22 C -0.212 4.212 23 C -0.188 4.188 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.173 0.827 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.224 0.776 37 H 0.051 0.949 38 H 0.116 0.884 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.884 9.393 8.667 15.565 hybrid contribution 0.533 -0.852 -1.215 1.576 sum -8.351 8.541 7.452 14.079 Atomic orbital electron populations 1.21041 0.88188 1.04619 1.03671 1.22142 0.97016 0.92450 0.89252 1.22580 0.92491 0.99802 1.11157 1.18997 0.88981 0.82855 0.76437 1.90713 1.71784 1.32174 1.49345 1.47640 1.07033 1.09385 1.70535 1.21932 0.97725 0.84998 1.01538 1.21699 0.79747 1.02684 0.96461 1.20957 0.92570 0.88941 0.94056 0.93854 1.22251 0.97760 1.01029 1.00306 1.42964 1.73256 1.17699 1.04131 1.19570 1.32012 1.00023 0.85259 0.91598 1.25442 1.02972 0.97286 1.00957 1.69922 1.48137 1.07979 1.33938 0.85247 0.76568 0.77317 0.81698 1.19353 1.22672 1.22326 1.21406 1.00859 0.89842 1.03451 1.23122 0.99522 0.97554 1.00968 1.22724 1.01994 1.02555 0.91548 0.89903 0.89742 0.88770 0.82677 0.90333 0.90521 0.91083 0.86808 0.92730 0.94775 0.94727 0.90208 0.77619 0.94860 0.88358 0.85961 0.90267 0.90706 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.53 71.24 0.68 -1.86 16 2 C -0.01 -0.22 5.80 -17.62 -0.10 -0.32 16 3 C -0.24 -8.02 8.72 23.43 0.20 -7.82 16 4 C 0.53 21.94 6.82 86.57 0.59 22.53 16 5 O -0.56 -27.95 10.70 -4.07 -0.04 -27.99 16 6 N -0.61 -21.18 2.77 -851.08 -2.36 -23.54 16 7 C 0.08 1.89 10.10 127.77 1.29 3.18 16 8 C 0.12 4.08 5.14 86.38 0.44 4.52 16 9 C 0.14 5.99 3.20 44.99 0.14 6.13 16 10 H 0.04 1.77 8.08 -2.39 -0.02 1.75 16 11 C -0.15 -5.69 9.49 71.98 0.68 -5.00 16 12 N -0.74 -39.93 4.52 -322.95 -1.46 -41.39 16 13 C -0.24 -13.88 9.93 84.03 0.83 -13.05 16 14 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 15 C -0.07 -4.46 5.50 84.86 0.47 -3.99 16 16 N -0.95 -61.19 13.06 21.65 0.28 -60.91 16 17 Si 0.96 48.67 29.55 68.60 2.03 50.70 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 20 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 21 C -0.14 -5.49 4.25 -11.54 -0.05 -5.54 16 22 C -0.17 -5.66 9.80 30.62 0.30 -5.36 16 23 C -0.15 -5.11 10.24 30.62 0.31 -4.79 16 24 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.08 1.57 6.30 -2.39 -0.02 1.55 16 26 H 0.09 1.51 8.07 -2.39 -0.02 1.49 16 27 H 0.16 3.86 6.37 -2.91 -0.02 3.85 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.64 8.07 -2.38 -0.02 1.62 16 30 H 0.07 1.64 6.20 -2.39 -0.01 1.62 16 31 H 0.11 2.84 8.07 -2.39 -0.02 2.82 16 32 H 0.05 2.15 7.42 -2.39 -0.02 2.13 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.39 23.15 5.00 -92.70 -0.46 22.69 16 37 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.10 5.32 6.40 -2.39 -0.02 5.31 16 39 H 0.12 3.04 6.27 -2.38 -0.01 3.02 16 40 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 Total: -1.00 -77.68 337.99 4.78 -72.90 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: 0.53 Total: 41.61 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 5.80 Total: -11.37 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -3.54 Total: -125.84 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.04 Total: -27.99 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -77.68 4.78 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277766735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.906 kcal (2) G-P(sol) polarization free energy of solvation -77.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds