Wall clock time and date at job start Mon Mar 30 2020 19:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47072 * 2 1 4 4 C 1.53001 * 109.47020 * 239.99907 * 2 1 3 5 5 N 1.46498 * 109.46790 * 185.00046 * 4 2 1 6 6 C 1.46497 * 120.00207 * 269.99840 * 5 4 2 7 7 C 1.34784 * 119.99828 * 90.00387 * 5 4 2 8 8 O 1.21272 * 120.00158 * 359.97438 * 7 5 4 9 9 C 1.50698 * 119.99707 * 180.02562 * 7 5 4 10 10 H 1.08999 * 109.63831 * 300.41486 * 9 7 5 11 11 C 1.53024 * 109.64726 * 61.05033 * 9 7 5 12 12 C 1.50071 * 110.14885 * 169.12027 * 11 9 7 13 13 C 1.29441 * 124.07164 * 342.87145 * 12 11 9 14 14 C 1.50072 * 124.08064 * 0.46761 * 13 12 11 15 15 C 1.53024 * 110.14587 * 342.87032 * 14 13 12 16 16 N 1.46504 * 109.46802 * 120.00176 * 2 1 3 17 17 C 1.36943 * 119.99781 * 274.99978 * 16 2 1 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 2 19 19 C 1.38811 * 119.99622 * 180.27904 * 17 16 2 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48504 * 109.47306 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47021 * 119.99661 * 21 19 17 24 24 H 1.48501 * 109.47039 * 240.00078 * 21 19 17 25 25 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47059 * 300.00064 * 1 2 3 27 27 H 1.08998 * 109.46686 * 59.99845 * 1 2 3 28 28 H 1.08998 * 109.47177 * 305.00067 * 4 2 1 29 29 H 1.09000 * 109.46849 * 65.00207 * 4 2 1 30 30 H 1.09002 * 109.47148 * 90.00516 * 6 5 4 31 31 H 1.09003 * 109.47475 * 210.00299 * 6 5 4 32 32 H 1.08995 * 109.46960 * 330.00417 * 6 5 4 33 33 H 1.08994 * 109.35798 * 289.32991 * 11 9 7 34 34 H 1.08998 * 109.35619 * 48.91445 * 11 9 7 35 35 H 1.07990 * 117.96383 * 162.85096 * 12 11 9 36 36 H 1.08000 * 117.95875 * 180.44760 * 13 12 11 37 37 H 1.09001 * 109.35572 * 222.66309 * 14 13 12 38 38 H 1.08996 * 109.35521 * 103.07619 * 14 13 12 39 39 H 1.09004 * 109.63874 * 289.74921 * 15 14 13 40 40 H 1.08990 * 109.64079 * 169.11912 * 15 14 13 41 41 H 0.97000 * 120.00410 * 95.00304 * 16 2 1 42 42 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2340 -1.7612 7 6 4.0757 -1.8988 -0.6115 8 8 3.3851 -2.7764 -0.1387 9 6 5.5776 -2.0066 -0.5506 10 1 5.9869 -1.9968 -1.5608 11 6 6.1456 -0.8331 0.2506 12 6 7.5989 -1.0636 0.5453 13 6 8.1824 -2.2159 0.4591 14 6 7.4896 -3.4803 0.0427 15 6 5.9728 -3.3110 0.1532 16 7 2.0183 -0.6907 1.1962 17 6 2.1491 -0.0075 2.3758 18 1 1.8926 1.0405 2.4242 19 6 2.6172 -0.6605 3.5078 20 7 2.9302 -1.9375 3.4487 21 14 2.8029 0.2732 5.1150 22 1 2.3878 1.6854 4.9178 23 1 1.9471 -0.3543 6.1537 24 1 4.2219 0.2312 5.5508 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.6054 -1.7198 -1.2951 29 1 1.7517 -0.1583 -2.1369 30 1 4.5401 0.9847 -0.9982 31 1 5.2735 -0.1926 -2.1137 32 1 3.8103 0.6988 -2.5963 33 1 6.0352 0.0852 -0.3261 34 1 5.5978 -0.7368 1.1879 35 1 8.1950 -0.2155 0.8478 36 1 9.2334 -2.2706 0.7017 37 1 7.8100 -4.2975 0.6890 38 1 7.7530 -3.7136 -0.9889 39 1 5.6851 -3.2625 1.2034 40 1 5.4743 -4.1525 -0.3279 41 1 2.2491 -1.6318 1.1527 42 1 3.2570 -2.3939 4.2398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283571929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:24 Heat of formation + Delta-G solvation = -12.582043 kcal Electronic energy + Delta-G solvation = -21852.103143 eV Core-core repulsion = 18832.572528 eV Total energy + Delta-G solvation = -3019.530616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.90627 -37.47534 -35.75847 -34.32669 -32.00952 -30.84634 -30.42630 -28.52558 -26.91192 -25.62638 -23.57014 -23.15766 -22.20112 -19.86954 -18.67135 -17.65717 -17.17092 -16.44385 -15.88640 -15.29594 -14.84491 -14.47231 -13.82854 -13.69137 -13.36204 -13.16383 -12.88796 -12.74836 -12.43516 -12.16146 -12.14895 -11.86702 -11.80992 -11.73990 -11.31403 -11.12080 -10.79335 -10.59135 -10.57522 -10.41451 -10.25274 -10.02247 -9.92463 -9.48868 -8.96077 -8.76976 -8.73131 -7.97506 -6.74888 -5.56693 -2.85985 2.51869 3.31530 3.48612 3.54182 3.56675 3.62608 4.69970 4.83768 4.96892 5.17145 5.25052 5.38919 5.52802 5.56310 5.57204 5.59634 5.69267 5.72350 5.79892 5.85744 5.89649 6.00868 6.08588 6.11074 6.13713 6.26490 6.34356 6.45513 6.46641 6.53217 6.74627 6.81093 6.88816 6.89129 7.05469 7.17268 7.23672 7.82506 7.98374 8.59663 8.92330 9.72345 10.36505 10.75815 11.63294 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.008729 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.381978 B = 3206.778033 C = 4390.732377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.042 0.958 4 C 0.110 3.890 5 N -0.610 5.610 6 C 0.082 3.918 7 C 0.526 3.474 8 O -0.515 6.515 9 C -0.096 4.096 10 H 0.084 0.916 11 C -0.092 4.092 12 C -0.143 4.143 13 C -0.166 4.166 14 C -0.088 4.088 15 C -0.100 4.100 16 N -0.720 5.720 17 C -0.237 4.237 18 H 0.064 0.936 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.895 3.105 22 H -0.283 1.283 23 H -0.294 1.294 24 H -0.294 1.294 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.399 0.601 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 2.364 -12.742 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.060 0.940 4 C -0.013 4.013 5 N -0.344 5.344 6 C -0.062 4.062 7 C 0.314 3.686 8 O -0.389 6.389 9 C -0.117 4.117 10 H 0.102 0.898 11 C -0.129 4.129 12 C -0.161 4.161 13 C -0.184 4.184 14 C -0.125 4.125 15 C -0.138 4.138 16 N -0.366 5.366 17 C -0.369 4.369 18 H 0.082 0.918 19 C -0.208 4.208 20 N -0.565 5.565 21 Si 0.727 3.273 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.221 1.221 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.238 0.762 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.435 1.977 -12.353 14.553 hybrid contribution 0.221 0.523 1.099 1.237 sum 7.656 2.500 -11.254 13.839 Atomic orbital electron populations 1.22418 0.99319 1.00899 0.99815 1.20634 0.91881 0.95511 0.87695 0.94029 1.21823 0.79584 1.01883 0.98050 1.47571 1.06455 1.21122 1.59245 1.21834 0.95132 0.91187 0.98043 1.20340 0.90033 0.81328 0.76912 1.90679 1.64413 1.39801 1.43991 1.21230 0.92353 0.97915 1.00212 0.89787 1.20636 0.93278 0.97018 1.01921 1.22049 0.96310 0.97494 1.00250 1.22000 0.99378 0.94736 1.02268 1.20458 0.95305 0.95956 1.00792 1.21424 0.93943 0.95784 1.02665 1.42729 1.77583 1.11791 1.04536 1.19227 1.36242 0.93612 0.87779 0.91820 1.24705 1.02685 0.95889 0.97559 1.69750 1.50436 1.08265 1.28099 0.86296 0.77194 0.78818 0.84994 1.20825 1.22091 1.22119 0.93428 0.92736 0.94720 0.90461 0.91380 0.92517 0.91463 0.91877 0.90390 0.88632 0.88099 0.88452 0.91137 0.91502 0.90036 0.91195 0.76226 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.49 37.16 0.35 -2.72 16 2 C 0.15 3.18 3.20 -67.93 -0.22 2.96 16 3 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 4 C 0.11 1.91 5.19 -4.04 -0.02 1.89 16 5 N -0.61 -10.33 2.77 -181.58 -0.50 -10.83 16 6 C 0.08 1.01 8.86 59.85 0.53 1.54 16 7 C 0.53 10.24 6.34 -10.98 -0.07 10.17 16 8 O -0.51 -12.35 13.22 5.56 0.07 -12.27 16 9 C -0.10 -1.54 1.75 -91.56 -0.16 -1.70 16 10 H 0.08 1.12 7.37 -51.93 -0.38 0.74 16 11 C -0.09 -1.46 4.96 -28.17 -0.14 -1.60 16 12 C -0.14 -2.00 9.80 -35.90 -0.35 -2.36 16 13 C -0.17 -2.19 9.80 -35.90 -0.35 -2.54 16 14 C -0.09 -1.16 6.12 -28.17 -0.17 -1.33 16 15 C -0.10 -1.67 4.69 -26.51 -0.12 -1.80 16 16 N -0.72 -18.87 4.52 -53.42 -0.24 -19.11 16 17 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 18 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.92 -28.77 13.06 55.49 0.72 -28.04 16 21 Si 0.90 23.04 29.55 -169.99 -5.02 18.01 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 29 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 30 H 0.06 0.74 7.21 -51.93 -0.37 0.37 16 31 H 0.07 0.71 5.93 -51.93 -0.31 0.40 16 32 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 33 H 0.08 1.07 5.02 -51.93 -0.26 0.81 16 34 H 0.10 1.99 8.10 -51.93 -0.42 1.57 16 35 H 0.10 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.10 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.67 8.12 -51.93 -0.42 1.25 16 40 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 41 H 0.40 11.43 5.02 -40.82 -0.20 11.23 16 42 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -33.67 329.01 -7.90 -41.57 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.91 Total: 10.56 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.97 Total: -4.84 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.02 Total: -57.99 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.67 -7.90 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283571929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.985 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds