Wall clock time and date at job start Mon Mar 30 2020 19:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 C 1.53001 * 109.47014 * 120.00552 * 2 1 3 5 5 N 1.46498 * 109.46967 * 174.99942 * 4 2 1 6 6 C 1.46497 * 120.00061 * 89.99714 * 5 4 2 7 7 C 1.34785 * 119.99607 * 269.99694 * 5 4 2 8 8 O 1.21275 * 120.00070 * 359.97438 * 7 5 4 9 9 C 1.50695 * 119.99497 * 180.02562 * 7 5 4 10 10 H 1.09001 * 109.64169 * 300.41307 * 9 7 5 11 11 C 1.53019 * 109.64901 * 61.05597 * 9 7 5 12 12 C 1.50065 * 110.15015 * 169.11942 * 11 9 7 13 13 C 1.29437 * 124.07732 * 342.86633 * 12 11 9 14 14 C 1.50063 * 124.07447 * 0.47300 * 13 12 11 15 15 C 1.53020 * 110.14824 * 342.86485 * 14 13 12 16 16 N 1.46507 * 109.46602 * 240.00073 * 2 1 3 17 17 C 1.36935 * 119.99742 * 85.00573 * 16 2 1 18 18 H 1.07999 * 120.00083 * 359.97438 * 17 16 2 19 19 C 1.38817 * 119.99986 * 179.97438 * 17 16 2 20 20 N 1.31617 * 119.99464 * 0.27719 * 19 17 16 21 21 Si 1.86800 * 119.99902 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47364 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46883 * 120.00276 * 21 19 17 24 24 H 1.48497 * 109.46870 * 240.00086 * 21 19 17 25 25 H 1.09005 * 109.47291 * 59.99545 * 1 2 3 26 26 H 1.09000 * 109.47695 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47240 * 299.99841 * 1 2 3 28 28 H 1.08995 * 109.46707 * 294.99785 * 4 2 1 29 29 H 1.08999 * 109.47454 * 54.99592 * 4 2 1 30 30 H 1.09003 * 109.46767 * 90.00306 * 6 5 4 31 31 H 1.09001 * 109.46877 * 209.99661 * 6 5 4 32 32 H 1.08995 * 109.47452 * 329.99986 * 6 5 4 33 33 H 1.09006 * 109.35482 * 289.33075 * 11 9 7 34 34 H 1.09005 * 109.35659 * 48.90828 * 11 9 7 35 35 H 1.07999 * 117.96207 * 162.84789 * 12 11 9 36 36 H 1.08002 * 117.96237 * 180.44546 * 13 12 11 37 37 H 1.09000 * 109.35938 * 222.65681 * 14 13 12 38 38 H 1.09004 * 109.35986 * 103.07364 * 14 13 12 39 39 H 1.08994 * 109.64570 * 289.75086 * 15 14 13 40 40 H 1.09007 * 109.64559 * 169.11914 * 15 14 13 41 41 H 0.96999 * 120.00180 * 264.99500 * 16 2 1 42 42 H 0.97001 * 120.00638 * 359.71685 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.3343 0.2339 1.7612 7 6 4.0756 -1.8989 0.6114 8 8 3.3849 -2.7769 0.1394 9 6 5.5775 -2.0073 0.5515 10 1 5.9846 -1.1574 0.0037 11 6 6.1486 -2.0314 1.9709 12 6 7.6022 -2.4026 1.9371 13 6 8.1842 -2.9630 0.9258 14 6 7.4890 -3.3105 -0.3579 15 6 5.9727 -3.3116 -0.1526 16 7 2.0182 -0.6906 -1.1963 17 6 2.1490 -0.0074 -2.3758 18 1 1.8919 1.0404 -2.4243 19 6 2.6121 -0.6617 -3.5092 20 7 2.9203 -1.9399 -3.4513 21 14 2.7899 0.2702 -5.1183 22 1 2.3752 1.6824 -4.9211 23 1 4.2069 0.2281 -5.5608 24 1 1.9295 -0.3590 -6.1523 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7516 -0.1585 2.1369 29 1 1.6053 -1.7199 1.2951 30 1 4.5424 0.0090 2.8073 31 1 5.2721 0.2950 1.2091 32 1 3.8091 1.1864 1.6919 33 1 6.0379 -1.0450 2.4217 34 1 5.6028 -2.7623 2.5676 35 1 8.2000 -2.1886 2.8107 36 1 9.2357 -3.1945 1.0111 37 1 7.8098 -4.2991 -0.6864 38 1 7.7499 -2.5764 -1.1203 39 1 5.6872 -4.1627 0.4656 40 1 5.4720 -3.3724 -1.1190 41 1 2.2489 -1.6318 -1.1528 42 1 2.8277 -2.4239 -2.6158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283571933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:30 Heat of formation + Delta-G solvation = -14.471861 kcal Electronic energy + Delta-G solvation = -21679.129751 eV Core-core repulsion = 18659.517187 eV Total energy + Delta-G solvation = -3019.612565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06678 -37.65609 -35.90863 -34.54313 -32.19553 -30.98352 -30.58558 -28.23864 -27.01732 -25.75100 -23.48575 -23.22147 -22.33195 -20.06824 -18.80183 -17.84684 -17.31817 -16.54210 -16.09453 -15.42285 -15.25060 -14.15555 -13.94403 -13.85033 -13.50522 -13.47636 -13.18519 -12.91175 -12.65261 -12.34634 -12.21787 -11.99731 -11.91379 -11.85719 -11.42730 -11.09275 -10.75988 -10.66409 -10.54676 -10.47537 -10.17907 -10.10072 -9.93789 -9.14395 -9.03419 -8.95732 -8.76811 -8.09273 -6.81405 -5.90361 -2.88933 2.29942 3.18708 3.47059 3.56693 3.64423 3.73401 4.66867 4.77695 4.78626 4.99727 5.21614 5.29468 5.32363 5.41723 5.46404 5.47398 5.58906 5.66157 5.71926 5.74526 5.77983 5.83735 5.98275 6.00530 6.02639 6.03284 6.14671 6.26441 6.37035 6.51665 6.55753 6.60297 6.72939 6.80417 6.93565 6.95891 7.14196 7.85163 7.97737 8.75294 8.99371 9.49960 10.35067 10.53204 11.59041 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.007381 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.515153 B = 3792.833272 C = 4934.035275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.043 0.957 4 C 0.108 3.892 5 N -0.607 5.607 6 C 0.082 3.918 7 C 0.529 3.471 8 O -0.526 6.526 9 C -0.101 4.101 10 H 0.096 0.904 11 C -0.087 4.087 12 C -0.159 4.159 13 C -0.150 4.150 14 C -0.094 4.094 15 C -0.099 4.099 16 N -0.733 5.733 17 C -0.331 4.331 18 H 0.058 0.942 19 C -0.046 4.046 20 N -0.944 5.944 21 Si 1.081 2.919 22 H -0.297 1.297 23 H -0.295 1.295 24 H -0.294 1.294 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.382 0.618 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.908 2.212 13.931 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.061 0.939 4 C -0.015 4.015 5 N -0.341 5.341 6 C -0.061 4.061 7 C 0.317 3.683 8 O -0.402 6.402 9 C -0.123 4.123 10 H 0.114 0.886 11 C -0.124 4.124 12 C -0.177 4.177 13 C -0.168 4.168 14 C -0.131 4.131 15 C -0.137 4.137 16 N -0.380 5.380 17 C -0.463 4.463 18 H 0.076 0.924 19 C -0.244 4.244 20 N -0.590 5.590 21 Si 0.913 3.087 22 H -0.224 1.224 23 H -0.223 1.223 24 H -0.222 1.222 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.220 0.780 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.951 1.818 12.059 14.558 hybrid contribution -0.395 0.214 1.616 1.677 sum 7.556 2.032 13.675 15.756 Atomic orbital electron populations 1.22400 0.99178 1.00849 0.99956 1.20558 0.91922 0.95472 0.87184 0.93933 1.21845 0.79533 1.01958 0.98209 1.47583 1.06549 1.21017 1.58905 1.21826 0.95830 0.91070 0.97414 1.20362 0.90063 0.81201 0.76696 1.90645 1.64581 1.39996 1.44952 1.21294 0.92270 1.01165 0.97534 0.88573 1.20616 0.93622 1.02369 0.95824 1.21959 0.96137 1.00937 0.98694 1.22139 0.99465 0.99442 0.95735 1.20510 0.95090 1.01887 0.95579 1.21411 0.94508 0.95611 1.02175 1.42695 1.78820 1.10919 1.05557 1.20059 1.41891 0.94811 0.89501 0.92392 1.25630 0.99964 0.97641 1.01201 1.70683 1.50930 1.08034 1.29332 0.83218 0.76213 0.73630 0.75603 1.22407 1.22276 1.22184 0.92645 0.93538 0.94567 0.91157 0.90443 0.93073 0.91116 0.91423 0.90094 0.90812 0.87991 0.88179 0.90858 0.90593 0.91626 0.89697 0.78023 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.49 37.16 0.35 -2.77 16 2 C 0.16 3.36 3.20 -67.93 -0.22 3.14 16 3 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 4 C 0.11 1.89 5.14 -4.04 -0.02 1.87 16 5 N -0.61 -10.30 2.77 -181.58 -0.50 -10.80 16 6 C 0.08 1.02 8.82 59.85 0.53 1.55 16 7 C 0.53 10.23 6.34 -10.98 -0.07 10.16 16 8 O -0.53 -12.42 13.22 5.56 0.07 -12.34 16 9 C -0.10 -1.62 1.75 -91.56 -0.16 -1.78 16 10 H 0.10 1.58 7.37 -51.93 -0.38 1.20 16 11 C -0.09 -1.06 4.96 -28.18 -0.14 -1.20 16 12 C -0.16 -1.78 9.80 -35.90 -0.35 -2.13 16 13 C -0.15 -1.73 9.80 -35.90 -0.35 -2.09 16 14 C -0.09 -1.25 6.12 -28.18 -0.17 -1.42 16 15 C -0.10 -1.63 4.69 -26.51 -0.12 -1.76 16 16 N -0.73 -19.51 4.52 -53.42 -0.24 -19.75 16 17 C -0.33 -9.73 9.93 -15.06 -0.15 -9.88 16 18 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 19 C -0.05 -1.39 5.50 -17.43 -0.10 -1.49 16 20 N -0.94 -30.75 13.70 55.49 0.76 -29.99 16 21 Si 1.08 27.18 29.92 -169.99 -5.09 22.09 16 22 H -0.30 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.08 1.48 7.42 -51.93 -0.39 1.09 16 30 H 0.05 0.50 7.21 -51.93 -0.37 0.12 16 31 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 32 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.08 0.84 5.02 -51.93 -0.26 0.58 16 34 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 40 H 0.08 1.71 7.91 -51.93 -0.41 1.30 16 41 H 0.38 10.88 3.85 -40.82 -0.16 10.73 16 42 H 0.26 8.80 6.77 -40.82 -0.28 8.52 16 LS Contribution 327.58 15.07 4.94 4.94 Total: -1.00 -34.91 327.58 -7.86 -42.76 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.82 Total: 10.87 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.97 Total: -7.78 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.01 Total: -60.54 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 27.18 SS G_CDS: -5.09 Total: 22.09 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.91 -7.86 -42.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283571933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.289 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds