Wall clock time and date at job start Mon Mar 30 2020 19:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46821 * 2 1 4 4 C 1.53007 * 109.46920 * 119.99147 * 2 1 3 5 5 C 1.50696 * 109.47047 * 185.00029 * 4 2 1 6 6 C 1.35449 * 126.77663 * 89.98380 * 5 4 2 7 7 C 1.41387 * 103.98917 * 180.02562 * 6 5 4 8 8 N 1.30173 * 106.39214 * 0.02562 * 7 6 5 9 9 O 1.20923 * 111.60616 * 359.97438 * 8 7 6 10 10 N 1.46897 * 109.47514 * 239.99234 * 2 1 3 11 11 C 1.46906 * 110.99774 * 85.00000 * 10 2 1 12 12 C 1.52994 * 109.47073 * 180.02562 * 11 10 2 13 13 C 1.52999 * 109.47144 * 299.99752 * 12 11 10 14 14 C 1.53000 * 109.47280 * 60.00103 * 12 11 10 15 15 C 1.52998 * 109.47260 * 180.02562 * 12 11 10 16 16 C 1.50696 * 109.47361 * 179.97438 * 15 12 11 17 17 H 1.07993 * 120.00064 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00150 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00043 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00311 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47177 * 59.99582 * 20 18 16 22 22 H 1.48497 * 109.47429 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46874 * 299.99939 * 20 18 16 24 24 H 1.09003 * 109.46728 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46816 * 300.00232 * 1 2 3 26 26 H 1.08994 * 109.47004 * 60.00855 * 1 2 3 27 27 H 1.08998 * 109.46910 * 65.00401 * 4 2 1 28 28 H 1.08996 * 109.47047 * 305.00276 * 4 2 1 29 29 H 1.08004 * 128.00729 * 0.07331 * 6 5 4 30 30 H 1.07993 * 126.80418 * 180.02562 * 7 6 5 31 31 H 1.00899 * 111.00323 * 208.95499 * 10 2 1 32 32 H 1.09003 * 109.47154 * 300.00449 * 11 10 2 33 33 H 1.09000 * 109.46944 * 59.99960 * 11 10 2 34 34 H 1.09004 * 109.46851 * 60.00220 * 13 12 11 35 35 H 1.08997 * 109.47579 * 180.02562 * 13 12 11 36 36 H 1.09000 * 109.47021 * 300.00558 * 13 12 11 37 37 H 1.08998 * 109.47468 * 60.00169 * 14 12 11 38 38 H 1.08997 * 109.46947 * 180.02562 * 14 12 11 39 39 H 1.09003 * 109.46622 * 299.99713 * 14 12 11 40 40 H 1.09003 * 109.46842 * 299.99945 * 15 12 11 41 41 H 1.09002 * 109.47580 * 59.99363 * 15 12 11 42 42 H 0.97002 * 120.00335 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5419 -0.6148 1.3129 6 6 4.2609 0.3629 1.9144 7 6 5.6050 -0.0094 1.6824 8 7 5.5668 -1.1167 0.9992 9 8 4.4300 -1.4685 0.7845 10 7 2.0198 -0.6926 -1.1993 11 6 2.0826 0.2224 -2.3469 12 6 2.5952 -0.5335 -3.5743 13 6 3.9923 -1.0865 -3.2860 14 6 1.6454 -1.6892 -3.8950 15 6 2.6613 0.4196 -4.7693 16 6 3.1668 -0.3247 -5.9782 17 1 3.4165 -1.3726 -5.9017 18 6 3.3106 0.3321 -7.1819 19 7 3.0061 1.6081 -7.2752 20 14 3.9379 -0.5903 -8.6802 21 1 3.0170 -1.7129 -8.9918 22 1 4.0019 0.3347 -9.8401 23 1 5.2942 -1.1260 -8.3996 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.7517 -1.7714 1.2058 28 1 1.6053 -0.2615 2.1370 29 1 3.8927 1.2266 2.4483 30 1 6.4883 0.5200 2.0077 31 1 2.9174 -1.1206 -1.0285 32 1 1.0872 0.6161 -2.5526 33 1 2.7589 1.0460 -2.1182 34 1 3.9457 -1.7654 -2.4345 35 1 4.3578 -1.6246 -4.1605 36 1 4.6690 -0.2630 -3.0574 37 1 0.6501 -1.2953 -4.1005 38 1 2.0109 -2.2280 -4.7692 39 1 1.5989 -2.3682 -3.0435 40 1 1.6661 0.8140 -4.9749 41 1 3.3381 1.2429 -4.5407 42 1 3.1069 2.0702 -8.1222 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308805713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:47 Heat of formation + Delta-G solvation = 18.910664 kcal Electronic energy + Delta-G solvation = -20902.497562 eV Core-core repulsion = 17884.332572 eV Total energy + Delta-G solvation = -3018.164990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.88210 -39.53725 -37.35816 -34.88356 -34.54886 -33.24831 -31.17760 -28.85277 -28.10099 -27.83410 -26.61392 -24.51256 -24.32465 -22.52698 -21.37247 -19.59158 -18.59146 -18.33784 -18.21369 -16.93762 -16.50016 -16.19508 -15.96286 -15.43357 -14.87237 -14.61751 -14.44137 -14.30355 -13.92103 -13.71298 -13.50610 -13.28112 -12.89118 -12.81713 -12.66574 -12.54270 -12.40870 -12.26894 -12.17547 -12.14031 -11.88368 -11.86383 -11.41744 -11.37888 -10.88432 -10.76478 -10.50797 -10.27786 -9.31708 -8.14664 -6.21767 0.52254 1.37214 1.39997 1.42427 1.49740 2.19722 2.43220 3.18988 3.24327 3.50429 3.65649 3.91920 4.12479 4.14804 4.17233 4.25127 4.36170 4.47768 4.56091 4.69793 4.73537 4.78009 4.86760 4.92011 4.97268 5.00790 5.05970 5.12370 5.18584 5.19370 5.25671 5.47891 5.50846 5.52061 5.57248 5.64962 5.84762 5.91297 6.12738 6.36484 6.48842 6.92560 7.31556 7.45409 8.97542 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.004573 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.953608 B = 6121.682756 C = 6735.119369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.081 3.919 3 H 0.040 0.960 4 C -0.036 4.036 5 C -0.038 4.038 6 C -0.233 4.233 7 C -0.017 4.017 8 N -0.402 5.402 9 O 0.077 5.923 10 N -0.680 5.680 11 C 0.085 3.915 12 C -0.055 4.055 13 C -0.118 4.118 14 C -0.105 4.105 15 C 0.041 3.959 16 C -0.516 4.516 17 H 0.064 0.936 18 C -0.003 4.003 19 N -0.937 5.937 20 Si 0.956 3.044 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.270 1.270 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.104 0.896 28 H 0.139 0.861 29 H 0.200 0.800 30 H 0.213 0.787 31 H 0.338 0.662 32 H 0.064 0.936 33 H 0.007 0.993 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.026 0.974 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.068 0.932 40 H -0.012 1.012 41 H -0.020 1.020 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 -3.230 21.782 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.029 4.029 3 H 0.058 0.942 4 C -0.074 4.074 5 C -0.102 4.102 6 C -0.254 4.254 7 C -0.195 4.195 8 N -0.108 5.108 9 O 0.014 5.986 10 N -0.314 5.314 11 C -0.044 4.044 12 C -0.056 4.056 13 C -0.175 4.175 14 C -0.163 4.163 15 C 0.004 3.996 16 C -0.554 4.554 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.579 5.579 20 Si 0.781 3.219 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.195 1.195 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.123 0.877 28 H 0.157 0.843 29 H 0.217 0.783 30 H 0.230 0.770 31 H 0.158 0.842 32 H 0.082 0.918 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.006 0.994 41 H -0.002 1.002 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.352 -4.172 21.000 21.539 hybrid contribution 1.052 1.369 -0.711 1.867 sum -1.300 -2.803 20.288 20.522 Atomic orbital electron populations 1.21745 0.92475 1.02956 1.01982 1.21689 0.97222 0.95632 0.88370 0.94206 1.20613 0.82094 1.04812 0.99929 1.25160 0.96047 0.91430 0.97540 1.22998 0.91758 1.03328 1.07309 1.25642 1.00926 0.94056 0.98868 1.73914 1.00395 1.17573 1.18959 1.84813 1.10833 1.44262 1.58725 1.60687 1.33469 1.32969 1.04249 1.21824 0.99253 0.92771 0.90592 1.20497 0.95228 0.96176 0.93675 1.21636 0.95927 0.99390 1.00547 1.21484 0.97338 0.97143 1.00287 1.18989 0.94236 0.93565 0.92822 1.21578 1.42227 0.96675 0.94947 0.91773 1.25906 0.96189 0.95662 1.02196 1.70099 1.50627 1.10683 1.26452 0.85639 0.79159 0.78478 0.78627 1.19154 1.21158 1.19549 0.91432 0.89892 0.93997 0.87733 0.84332 0.78293 0.77002 0.84216 0.91750 0.97459 0.92207 0.93355 0.95527 0.94582 0.94390 0.91341 0.99366 1.00208 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.42 71.98 0.68 -1.61 16 2 C 0.08 1.60 2.64 44.92 0.12 1.72 16 3 H 0.04 0.86 7.80 -2.39 -0.02 0.84 16 4 C -0.04 -0.51 5.38 29.85 0.16 -0.35 16 5 C -0.04 -0.74 5.99 25.04 0.15 -0.59 16 6 C -0.23 -3.99 11.09 22.40 0.25 -3.74 16 7 C -0.02 -0.35 12.17 85.71 1.04 0.69 16 8 N -0.40 -11.00 12.07 -59.26 -0.72 -11.72 16 9 O 0.08 2.01 10.32 71.61 0.74 2.75 16 10 N -0.68 -18.65 5.52 -491.55 -2.71 -21.36 16 11 C 0.08 2.99 4.45 86.30 0.38 3.37 16 12 C -0.06 -2.30 0.60 -52.18 -0.03 -2.33 16 13 C -0.12 -4.70 7.89 71.98 0.57 -4.14 16 14 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 15 C 0.04 2.21 4.04 29.85 0.12 2.33 16 16 C -0.52 -29.34 7.65 25.60 0.20 -29.14 16 17 H 0.06 3.51 5.68 -2.91 -0.02 3.50 16 18 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 19 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 20 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.04 0.89 7.45 -2.39 -0.02 0.87 16 27 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 30 H 0.21 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.34 9.63 4.74 -89.69 -0.43 9.20 16 32 H 0.06 2.30 7.44 -2.39 -0.02 2.29 16 33 H 0.01 0.27 8.06 -2.39 -0.02 0.25 16 34 H 0.06 2.07 6.57 -2.38 -0.02 2.06 16 35 H 0.05 2.07 6.61 -2.39 -0.02 2.05 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 39 H 0.07 2.31 7.60 -2.39 -0.02 2.29 16 40 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 42 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -69.22 335.02 4.87 -64.35 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.57 Total: 13.51 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 4.68 Total: -37.00 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -3.14 Total: -90.95 kcal Atomic # 8 Polarization: 2.01 SS G_CDS: 0.74 Total: 2.75 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.22 4.87 -64.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308805713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.265 kcal (2) G-P(sol) polarization free energy of solvation -69.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds