Wall clock time and date at job start Mon Mar 30 2020 19:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47260 * 2 1 4 4 N 1.46500 * 109.47788 * 240.00062 * 2 1 3 5 5 C 1.36943 * 119.99963 * 74.18689 * 4 2 1 6 6 H 1.07996 * 119.99724 * 0.02562 * 5 4 2 7 7 C 1.38806 * 119.99981 * 179.73184 * 5 4 2 8 8 N 1.31618 * 120.00230 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99951 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46717 * 90.00254 * 9 7 5 11 11 H 1.48490 * 109.47249 * 210.00196 * 9 7 5 12 12 H 1.48495 * 109.47411 * 330.00918 * 9 7 5 13 13 C 1.52996 * 109.47262 * 119.99681 * 2 1 3 14 14 H 1.09002 * 109.58772 * 73.02942 * 13 2 1 15 15 C 1.53195 * 109.58599 * 312.60179 * 13 2 1 16 16 C 1.53046 * 109.31207 * 185.57668 * 15 13 2 17 17 C 1.53041 * 109.54031 * 61.36240 * 16 15 13 18 18 C 1.53188 * 109.31191 * 298.63903 * 17 16 15 19 19 N 1.46919 * 108.78096 * 54.63141 * 18 17 16 20 20 C 1.34780 * 120.63173 * 126.37049 * 19 18 17 21 21 O 1.21282 * 120.00188 * 175.10913 * 20 19 18 22 22 C 1.50692 * 119.99918 * 355.10181 * 20 19 18 23 23 C 1.53004 * 117.50098 * 248.74671 * 22 20 19 24 24 C 1.53004 * 117.50051 * 180.08754 * 22 20 19 25 25 H 1.09002 * 109.47058 * 185.94542 * 1 2 3 26 26 H 1.08996 * 109.47460 * 305.94213 * 1 2 3 27 27 H 1.09001 * 109.47298 * 65.94435 * 1 2 3 28 28 H 0.96996 * 119.99857 * 254.19480 * 4 2 1 29 29 H 0.96996 * 120.00463 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.49851 * 305.52425 * 15 13 2 31 31 H 1.08998 * 109.49780 * 65.62658 * 15 13 2 32 32 H 1.09000 * 109.45788 * 301.34235 * 16 15 13 33 33 H 1.08997 * 109.45942 * 181.38769 * 16 15 13 34 34 H 1.08998 * 109.49891 * 178.68220 * 17 16 15 35 35 H 1.09002 * 109.52419 * 58.60278 * 17 16 15 36 36 H 1.09006 * 109.58863 * 294.84002 * 18 17 16 37 37 H 1.08999 * 109.58819 * 174.42517 * 18 17 16 38 38 H 1.09002 * 115.55124 * 34.41924 * 22 20 19 39 39 H 1.09001 * 117.49741 * 0.02562 * 23 22 20 40 40 H 1.09004 * 117.49998 * 145.02201 * 23 22 20 41 41 H 1.09001 * 117.50238 * 214.98035 * 24 22 20 42 42 H 1.08998 * 117.49366 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.9421 -0.0790 -2.4190 6 1 1.5221 0.9125 -2.5016 7 6 2.4100 -0.7310 -3.5515 8 7 2.3371 -0.1431 -4.7268 9 14 3.1446 -2.4425 -3.4074 10 1 2.0720 -3.4567 -3.5699 11 1 4.1694 -2.6320 -4.4650 12 1 3.7758 -2.5995 -2.0725 13 6 2.0400 -0.7212 1.2492 14 1 1.8792 -1.7940 1.1431 15 6 1.2901 -0.2060 2.4818 16 6 1.8987 -0.8274 3.7410 17 6 3.3665 -0.4106 3.8594 18 6 4.1398 -0.9281 2.6425 19 7 3.4742 -0.4529 1.4220 20 6 4.1659 0.2168 0.4788 21 8 3.6275 0.5263 -0.5630 22 6 5.6083 0.5813 0.7188 23 6 5.9414 2.0634 0.9019 24 6 6.3382 1.3432 -0.3893 25 1 -0.3633 -1.0222 0.1064 26 1 -0.3634 0.6032 0.8320 27 1 -0.3634 0.4189 -0.9384 28 1 2.3958 -1.5810 -1.1219 29 1 2.6644 -0.5986 -5.5182 30 1 1.3771 0.8793 2.5332 31 1 0.2386 -0.4842 2.4105 32 1 1.8337 -1.9137 3.6776 33 1 1.3511 -0.4816 4.6177 34 1 3.7928 -0.8344 4.7686 35 1 3.4344 0.6766 3.8982 36 1 4.1501 -2.0180 2.6524 37 1 5.1621 -0.5509 2.6717 38 1 6.1852 -0.1395 1.2981 39 1 5.1172 2.7747 0.8492 40 1 6.7378 2.3176 1.6014 41 1 7.3954 1.1239 -0.5386 42 1 5.7752 1.5804 -1.2919 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316869721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:28:55 Heat of formation + Delta-G solvation = 42.838732 kcal Electronic energy + Delta-G solvation = -22208.376336 eV Core-core repulsion = 19191.248945 eV Total energy + Delta-G solvation = -3017.127391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27421 -37.58302 -35.97542 -34.81026 -32.56985 -32.15938 -30.18790 -28.12730 -25.76494 -24.24285 -23.37010 -22.26134 -22.18290 -20.38548 -19.94367 -18.55400 -17.36785 -16.70075 -15.67602 -14.92944 -14.73712 -14.46459 -14.30557 -13.96516 -13.89111 -13.41578 -13.01524 -12.68827 -12.50132 -12.25043 -12.13453 -11.98964 -11.41701 -11.36538 -11.30246 -11.02893 -10.87745 -10.68945 -10.61857 -10.43483 -10.30811 -10.18045 -10.06261 -9.74391 -9.29554 -8.63147 -8.34148 -8.02530 -6.75065 -5.45193 -2.71985 3.15101 3.35801 3.53969 3.57194 3.60655 4.19421 4.69912 4.77687 4.86144 4.87430 4.99568 5.04926 5.12170 5.14646 5.30583 5.38317 5.52392 5.56100 5.70651 5.71742 5.75107 5.81364 5.85303 5.91021 6.02401 6.04785 6.05464 6.08869 6.16031 6.30676 6.40478 6.43152 6.47883 6.63426 6.90881 7.04020 7.33998 7.96224 8.29562 8.72361 9.00183 9.52748 10.26115 10.47369 11.75502 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.008809 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.137528 B = 3177.645198 C = 4060.682056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.188 3.812 3 H 0.064 0.936 4 N -0.719 5.719 5 C -0.182 4.182 6 H 0.084 0.916 7 C -0.010 4.010 8 N -0.950 5.950 9 Si 0.880 3.120 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.284 1.284 13 C 0.144 3.856 14 H 0.062 0.938 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.111 3.889 19 N -0.615 5.615 20 C 0.499 3.501 21 O -0.433 6.433 22 C -0.189 4.189 23 C -0.157 4.157 24 C -0.149 4.149 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.353 0.647 29 H 0.252 0.748 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.571 0.042 20.457 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.079 3.921 3 H 0.082 0.918 4 N -0.361 5.361 5 C -0.313 4.313 6 H 0.102 0.898 7 C -0.202 4.202 8 N -0.601 5.601 9 Si 0.713 3.287 10 H -0.220 1.220 11 H -0.224 1.224 12 H -0.210 1.210 13 C 0.040 3.960 14 H 0.080 0.920 15 C -0.166 4.166 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.013 4.013 19 N -0.353 5.353 20 C 0.284 3.716 21 O -0.301 6.301 22 C -0.211 4.211 23 C -0.194 4.194 24 C -0.187 4.187 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.185 0.815 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.249 0.392 19.650 20.108 hybrid contribution 0.785 -1.523 0.208 1.726 sum 5.034 -1.131 19.858 20.517 Atomic orbital electron populations 1.22530 0.99201 1.00186 1.00944 1.20336 0.90613 0.96904 0.84246 0.91814 1.42626 1.73412 1.16544 1.03536 1.18883 1.30179 0.99886 0.82342 0.89824 1.24498 1.02549 0.97671 0.95523 1.69686 1.54954 1.37702 0.97780 0.86573 0.78982 0.86878 0.76279 1.21953 1.22431 1.21031 1.21537 0.79403 0.99247 0.95776 0.92026 1.21997 0.99717 1.00984 0.93868 1.21523 0.95562 1.00623 0.97957 1.21908 0.96089 1.01577 0.97593 1.21613 0.96646 0.98594 0.84400 1.47880 1.09154 1.58393 1.19866 1.19747 0.87012 0.80780 0.84039 1.91291 1.67487 1.48503 1.22821 1.22278 0.96048 0.96356 1.06384 1.22849 1.03180 0.92598 1.00802 1.22958 1.00148 1.01583 0.93986 0.93944 0.94238 0.91945 0.81480 0.93782 0.91535 0.90537 0.92058 0.92048 0.91398 0.91559 0.92315 0.89997 0.87149 0.88527 0.88687 0.88679 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 8.44 37.15 0.31 -2.78 16 2 C 0.19 3.84 1.83 -67.94 -0.12 3.71 16 3 H 0.06 1.46 6.34 -51.93 -0.33 1.13 16 4 N -0.72 -18.04 3.05 -53.43 -0.16 -18.21 16 5 C -0.18 -5.43 8.66 -15.06 -0.13 -5.56 16 6 H 0.08 2.71 8.06 -52.49 -0.42 2.29 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 8 N -0.95 -31.73 13.97 55.49 0.78 -30.96 16 9 Si 0.88 24.09 27.73 -169.99 -4.71 19.37 16 10 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 11 H -0.30 -8.27 7.11 56.52 0.40 -7.87 16 12 H -0.28 -7.49 6.52 56.52 0.37 -7.13 16 13 C 0.14 2.33 2.62 -67.60 -0.18 2.16 16 14 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 15 C -0.13 -1.59 4.42 -26.61 -0.12 -1.70 16 16 C -0.12 -1.19 5.88 -26.69 -0.16 -1.34 16 17 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 18 C 0.11 1.26 6.33 -3.72 -0.02 1.23 16 19 N -0.62 -9.62 2.97 -165.23 -0.49 -10.11 16 20 C 0.50 9.19 7.21 -10.99 -0.08 9.11 16 21 O -0.43 -10.18 9.25 5.56 0.05 -10.12 16 22 C -0.19 -2.77 5.10 -91.77 -0.47 -3.24 16 23 C -0.16 -1.98 10.24 -26.69 -0.27 -2.26 16 24 C -0.15 -2.22 10.05 -26.69 -0.27 -2.49 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.60 6.84 -51.93 -0.36 0.25 16 27 H 0.06 1.31 7.88 -51.93 -0.41 0.90 16 28 H 0.35 9.00 5.55 -40.82 -0.23 8.78 16 29 H 0.25 8.10 8.31 -40.82 -0.34 7.76 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.91 6.83 -51.93 -0.35 0.55 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.81 5.55 -51.93 -0.29 0.53 16 38 H 0.11 1.34 6.61 -51.93 -0.34 1.00 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.11 2.09 7.67 -51.93 -0.40 1.69 16 LS Contribution 319.23 15.07 4.81 4.81 Total: -1.00 -35.02 319.23 -8.44 -43.46 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.94 Total: 6.73 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.76 Total: -4.97 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.12 Total: -59.28 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.05 Total: -10.12 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.71 Total: 19.37 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.02 -8.44 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316869721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.298 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds