Wall clock time and date at job start Mon Mar 30 2020 19:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47222 * 2 1 4 4 C 1.53004 * 109.46816 * 240.00631 * 2 1 3 5 5 N 1.46502 * 109.46934 * 184.99881 * 4 2 1 6 6 C 1.34774 * 119.99716 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00230 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99864 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.47082 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.64241 * 54.99757 * 9 8 6 11 11 C 1.53021 * 109.81414 * 294.46546 * 9 8 6 12 12 C 1.50070 * 110.14806 * 190.77626 * 11 9 8 13 13 C 1.29444 * 124.07244 * 17.13408 * 12 11 9 14 14 C 1.50059 * 124.07672 * 359.52988 * 13 12 11 15 15 C 1.53022 * 110.14941 * 17.13343 * 14 13 12 16 16 N 1.46495 * 109.47660 * 120.00104 * 2 1 3 17 17 C 1.36933 * 120.00340 * 275.00250 * 16 2 1 18 18 H 1.08007 * 119.99741 * 359.97438 * 17 16 2 19 19 C 1.38814 * 120.00294 * 179.97438 * 17 16 2 20 20 N 1.31622 * 119.99486 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00245 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46809 * 89.99905 * 21 19 17 23 23 H 1.48500 * 109.47275 * 209.99835 * 21 19 17 24 24 H 1.48504 * 109.47084 * 330.00362 * 21 19 17 25 25 H 1.08991 * 109.47621 * 59.99365 * 1 2 3 26 26 H 1.08992 * 109.46931 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46565 * 299.99782 * 1 2 3 28 28 H 1.09000 * 109.47389 * 64.99933 * 4 2 1 29 29 H 1.08996 * 109.46752 * 304.99840 * 4 2 1 30 30 H 0.96991 * 120.00080 * 359.97438 * 5 4 2 31 31 H 1.08999 * 109.47560 * 59.99704 * 8 6 5 32 32 H 1.08999 * 109.46948 * 299.99091 * 8 6 5 33 33 H 1.08995 * 109.36363 * 310.98587 * 11 9 8 34 34 H 1.09003 * 109.35624 * 70.57188 * 11 9 8 35 35 H 1.08000 * 117.96558 * 197.10971 * 12 11 9 36 36 H 1.08000 * 117.96235 * 179.50534 * 13 12 11 37 37 H 1.09007 * 109.36247 * 256.92389 * 14 13 12 38 38 H 1.09005 * 109.24862 * 137.26952 * 14 13 12 39 39 H 1.09007 * 109.64518 * 190.88479 * 15 14 13 40 40 H 1.08990 * 109.64616 * 70.24590 * 15 14 13 41 41 H 0.97003 * 119.99718 * 94.99722 * 16 2 1 42 42 H 0.97000 * 119.99723 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.1729 -1.4281 -2.1915 7 8 3.5698 -1.8829 -3.1402 8 6 5.6748 -1.5367 -2.1309 9 6 6.1848 -2.2578 -3.3803 10 1 5.8232 -1.7457 -4.2721 11 6 5.6895 -3.7056 -3.3821 12 6 6.3901 -4.4903 -4.4525 13 6 7.4843 -4.1112 -5.0310 14 6 8.1996 -2.8294 -4.7194 15 6 7.7187 -2.2698 -3.3788 16 7 2.0184 -0.6906 1.1961 17 6 2.1493 -0.0076 2.3757 18 1 1.8927 1.0405 2.4241 19 6 2.6116 -0.6621 3.5092 20 7 2.9237 -1.9394 3.4501 21 14 2.7907 0.2698 5.1181 22 1 1.5229 0.1796 5.8862 23 1 3.8949 -0.3240 5.9139 24 1 3.0965 1.6949 4.8334 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.7516 -0.1581 -2.1371 29 1 1.6053 -1.7196 -1.2953 30 1 3.9824 -0.4621 -0.4322 31 1 5.9629 -2.1004 -1.2436 32 1 6.1097 -0.5383 -2.0843 33 1 5.8920 -4.1580 -2.4114 34 1 4.6156 -3.7199 -3.5681 35 1 5.9546 -5.4298 -4.7589 36 1 7.9090 -4.7578 -5.7845 37 1 7.9990 -2.1029 -5.5070 38 1 9.2717 -3.0195 -4.6678 39 1 8.0928 -1.2540 -3.2503 40 1 8.0793 -2.9018 -2.5674 41 1 2.2491 -1.6318 1.1524 42 1 3.2465 -2.3969 4.2422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317253064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:31 Heat of formation + Delta-G solvation = -38.197491 kcal Electronic energy + Delta-G solvation = -20237.348833 eV Core-core repulsion = 17216.707448 eV Total energy + Delta-G solvation = -3020.641385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76994 -38.14632 -36.26152 -33.49342 -32.74530 -31.79764 -30.74529 -28.81645 -27.64364 -25.26051 -23.66115 -23.16142 -21.32838 -20.18447 -19.62864 -17.95842 -17.42100 -16.47620 -16.09915 -15.53234 -15.25179 -14.77273 -14.25419 -14.03220 -13.92136 -13.33705 -13.14860 -12.83633 -12.61286 -12.31176 -12.23499 -12.15861 -12.03503 -11.90494 -11.44680 -11.35242 -10.90115 -10.76694 -10.67705 -10.54315 -10.36796 -10.14044 -10.02524 -9.73915 -9.37803 -9.00459 -8.94639 -8.55479 -7.06460 -5.83921 -3.14131 2.30658 3.02571 3.38400 3.44173 3.45571 3.64937 4.52489 4.64819 4.70052 4.85398 5.13339 5.18301 5.32419 5.34888 5.45588 5.47724 5.53486 5.57474 5.62250 5.70875 5.80592 5.82061 5.83757 5.94962 5.98082 6.09589 6.15626 6.18441 6.29473 6.37406 6.45800 6.55875 6.66729 6.74908 6.87549 6.98471 7.06217 7.63514 8.00970 8.33679 8.65364 9.45554 10.00693 10.36462 11.38022 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.003972 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.198702 B = 7048.386085 C = 7788.543953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.115 3.885 5 N -0.714 5.714 6 C 0.509 3.491 7 O -0.554 6.554 8 C -0.139 4.139 9 C -0.067 4.067 10 H 0.078 0.922 11 C -0.095 4.095 12 C -0.141 4.141 13 C -0.172 4.172 14 C -0.087 4.087 15 C -0.118 4.118 16 N -0.724 5.724 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.410 0.590 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.385 0.615 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.016 -0.100 -14.012 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.009 4.009 5 N -0.366 5.366 6 C 0.296 3.704 7 O -0.434 6.434 8 C -0.179 4.179 9 C -0.086 4.086 10 H 0.096 0.904 11 C -0.132 4.132 12 C -0.159 4.159 13 C -0.190 4.190 14 C -0.124 4.124 15 C -0.155 4.155 16 N -0.366 5.366 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.246 0.754 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.599 -0.297 -14.531 16.401 hybrid contribution 0.266 0.190 1.394 1.432 sum 7.865 -0.107 -13.136 15.311 Atomic orbital electron populations 1.22361 0.98387 1.01251 1.00326 1.20509 0.92634 0.95720 0.86237 0.92950 1.21653 0.79878 1.00962 0.98450 1.46037 1.08154 1.58885 1.23476 1.20622 0.89998 0.77543 0.82261 1.90621 1.70575 1.48351 1.33811 1.21760 0.92644 1.02853 1.00610 1.20911 0.94320 0.95974 0.97416 0.90362 1.20657 1.01626 0.93563 0.97311 1.22140 0.96200 0.99624 0.97954 1.21976 0.97441 0.98349 1.01200 1.20402 0.99200 0.95319 0.97507 1.21697 0.95353 1.01011 0.97449 1.42472 1.78069 1.10838 1.05245 1.19227 1.36930 0.93887 0.87368 0.91140 1.24741 1.02006 0.95914 0.98003 1.69667 1.50603 1.08616 1.28918 0.86216 0.77318 0.78787 0.83980 1.21753 1.21797 1.20756 0.94214 0.93228 0.92372 0.92021 0.91985 0.75395 0.88687 0.89055 0.91214 0.88952 0.88323 0.88479 0.91171 0.91407 0.91625 0.91602 0.78083 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 2 C 0.16 2.97 3.05 -67.93 -0.21 2.77 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C 0.12 1.96 5.23 -4.04 -0.02 1.94 16 5 N -0.71 -11.71 5.39 -60.29 -0.32 -12.04 16 6 C 0.51 8.10 7.59 -10.99 -0.08 8.02 16 7 O -0.55 -10.28 14.07 5.56 0.08 -10.20 16 8 C -0.14 -1.72 5.18 -27.88 -0.14 -1.86 16 9 C -0.07 -0.81 1.87 -90.40 -0.17 -0.98 16 10 H 0.08 1.04 7.94 -51.93 -0.41 0.63 16 11 C -0.09 -1.23 5.05 -28.18 -0.14 -1.37 16 12 C -0.14 -1.64 9.80 -35.90 -0.35 -1.99 16 13 C -0.17 -1.79 9.80 -35.90 -0.35 -2.15 16 14 C -0.09 -0.82 6.11 -28.18 -0.17 -0.99 16 15 C -0.12 -1.17 5.31 -26.51 -0.14 -1.31 16 16 N -0.72 -16.87 4.56 -53.42 -0.24 -17.11 16 17 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 18 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -26.93 13.06 55.49 0.72 -26.20 16 21 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.41 6.80 8.14 -40.82 -0.33 6.47 16 31 H 0.09 1.15 8.11 -51.93 -0.42 0.73 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.09 1.41 6.27 -51.93 -0.33 1.08 16 35 H 0.10 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 41 H 0.39 9.75 7.80 -40.82 -0.32 9.43 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -29.33 339.95 -8.61 -37.94 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.27 Total: 13.22 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.68 Total: -7.26 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.16 Total: -55.35 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.33 -8.61 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317253064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.254 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds