Wall clock time and date at job start Mon Mar 30 2020 19:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47222 * 2 1 4 4 C 1.53004 * 109.46816 * 240.00631 * 2 1 3 5 5 N 1.46502 * 109.46934 * 184.99881 * 4 2 1 6 6 C 1.34774 * 119.99716 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00230 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99864 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.47082 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.64241 * 54.99757 * 9 8 6 11 11 C 1.53021 * 109.81414 * 294.46546 * 9 8 6 12 12 C 1.50070 * 110.14806 * 190.77626 * 11 9 8 13 13 C 1.29444 * 124.07244 * 17.13408 * 12 11 9 14 14 C 1.50059 * 124.07672 * 359.52988 * 13 12 11 15 15 C 1.53022 * 110.14941 * 17.13343 * 14 13 12 16 16 N 1.46495 * 109.47660 * 120.00104 * 2 1 3 17 17 C 1.36933 * 120.00340 * 275.00250 * 16 2 1 18 18 H 1.08007 * 119.99741 * 359.97438 * 17 16 2 19 19 C 1.38814 * 120.00294 * 179.97438 * 17 16 2 20 20 N 1.31622 * 119.99486 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00245 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46809 * 89.99905 * 21 19 17 23 23 H 1.48500 * 109.47275 * 209.99835 * 21 19 17 24 24 H 1.48504 * 109.47084 * 330.00362 * 21 19 17 25 25 H 1.08991 * 109.47621 * 59.99365 * 1 2 3 26 26 H 1.08992 * 109.46931 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46565 * 299.99782 * 1 2 3 28 28 H 1.09000 * 109.47389 * 64.99933 * 4 2 1 29 29 H 1.08996 * 109.46752 * 304.99840 * 4 2 1 30 30 H 0.96991 * 120.00080 * 359.97438 * 5 4 2 31 31 H 1.08999 * 109.47560 * 59.99704 * 8 6 5 32 32 H 1.08999 * 109.46948 * 299.99091 * 8 6 5 33 33 H 1.08995 * 109.36363 * 310.98587 * 11 9 8 34 34 H 1.09003 * 109.35624 * 70.57188 * 11 9 8 35 35 H 1.08000 * 117.96558 * 197.10971 * 12 11 9 36 36 H 1.08000 * 117.96235 * 179.50534 * 13 12 11 37 37 H 1.09007 * 109.36247 * 256.92389 * 14 13 12 38 38 H 1.09005 * 109.24862 * 137.26952 * 14 13 12 39 39 H 1.09007 * 109.64518 * 190.88479 * 15 14 13 40 40 H 1.08990 * 109.64616 * 70.24590 * 15 14 13 41 41 H 0.97003 * 119.99718 * 94.99722 * 16 2 1 42 42 H 0.97000 * 119.99723 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.1729 -1.4281 -2.1915 7 8 3.5698 -1.8829 -3.1402 8 6 5.6748 -1.5367 -2.1309 9 6 6.1848 -2.2578 -3.3803 10 1 5.8232 -1.7457 -4.2721 11 6 5.6895 -3.7056 -3.3821 12 6 6.3901 -4.4903 -4.4525 13 6 7.4843 -4.1112 -5.0310 14 6 8.1996 -2.8294 -4.7194 15 6 7.7187 -2.2698 -3.3788 16 7 2.0184 -0.6906 1.1961 17 6 2.1493 -0.0076 2.3757 18 1 1.8927 1.0405 2.4241 19 6 2.6116 -0.6621 3.5092 20 7 2.9237 -1.9394 3.4501 21 14 2.7907 0.2698 5.1181 22 1 1.5229 0.1796 5.8862 23 1 3.8949 -0.3240 5.9139 24 1 3.0965 1.6949 4.8334 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.7516 -0.1581 -2.1371 29 1 1.6053 -1.7196 -1.2953 30 1 3.9824 -0.4621 -0.4322 31 1 5.9629 -2.1004 -1.2436 32 1 6.1097 -0.5383 -2.0843 33 1 5.8920 -4.1580 -2.4114 34 1 4.6156 -3.7199 -3.5681 35 1 5.9546 -5.4298 -4.7589 36 1 7.9090 -4.7578 -5.7845 37 1 7.9990 -2.1029 -5.5070 38 1 9.2717 -3.0195 -4.6678 39 1 8.0928 -1.2540 -3.2503 40 1 8.0793 -2.9018 -2.5674 41 1 2.2491 -1.6318 1.1524 42 1 3.2465 -2.3969 4.2422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317253064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:31 Heat of formation + Delta-G solvation = -55.686068 kcal Electronic energy + Delta-G solvation = -20238.107195 eV Core-core repulsion = 17216.707448 eV Total energy + Delta-G solvation = -3021.399747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97432 -39.18059 -37.81699 -35.13406 -33.84584 -33.40578 -31.58419 -30.59930 -28.77829 -26.60160 -25.55018 -24.04093 -22.33173 -21.70178 -20.89722 -19.32683 -18.84939 -17.76481 -17.23144 -16.83286 -16.62782 -16.24842 -15.58792 -15.46178 -15.06916 -14.76676 -14.38340 -13.97241 -13.76783 -13.66273 -13.63431 -13.30569 -13.16926 -13.05767 -12.88883 -12.77578 -12.49899 -12.38511 -12.17720 -11.70334 -11.63537 -11.60987 -11.48264 -11.00106 -10.97265 -10.60935 -9.95128 -9.79893 -9.01753 -7.90734 -5.19818 1.44779 1.50830 1.51893 1.59708 1.75526 2.38999 2.58933 3.43594 3.73688 3.79650 3.88354 3.91174 4.01008 4.17511 4.30302 4.40258 4.45235 4.50889 4.60492 4.64907 4.73700 4.76019 4.79951 4.83708 4.88160 4.98411 5.06258 5.07396 5.13833 5.24862 5.26228 5.39781 5.45797 5.53457 5.57195 5.65439 5.81907 6.11519 6.29918 6.69222 7.35941 7.37369 8.09638 8.34469 9.31988 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.003972 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.198702 B = 7048.386085 C = 7788.543953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.124 3.876 5 N -0.716 5.716 6 C 0.505 3.495 7 O -0.583 6.583 8 C -0.132 4.132 9 C -0.064 4.064 10 H 0.065 0.935 11 C -0.093 4.093 12 C -0.167 4.167 13 C -0.160 4.160 14 C -0.091 4.091 15 C -0.114 4.114 16 N -0.732 5.732 17 C -0.235 4.235 18 H 0.078 0.922 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.967 3.033 22 H -0.294 1.294 23 H -0.299 1.299 24 H -0.268 1.268 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.410 0.590 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.372 0.628 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.215 1.361 -14.747 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.078 0.922 4 C -0.001 4.001 5 N -0.367 5.367 6 C 0.294 3.706 7 O -0.464 6.464 8 C -0.172 4.172 9 C -0.083 4.083 10 H 0.083 0.917 11 C -0.130 4.130 12 C -0.185 4.185 13 C -0.178 4.178 14 C -0.128 4.128 15 C -0.151 4.151 16 N -0.373 5.373 17 C -0.367 4.367 18 H 0.096 0.904 19 C -0.262 4.262 20 N -0.618 5.618 21 Si 0.797 3.203 22 H -0.222 1.222 23 H -0.226 1.226 24 H -0.192 1.192 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.246 0.754 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.204 0.796 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.783 1.207 -15.295 17.679 hybrid contribution -0.149 -0.246 1.516 1.543 sum 8.634 0.962 -13.780 16.289 Atomic orbital electron populations 1.22244 0.96988 1.01054 1.01330 1.20673 0.93465 0.95641 0.85117 0.92231 1.21507 0.80413 1.00047 0.98123 1.46069 1.07881 1.59058 1.23643 1.21255 0.91443 0.76499 0.81440 1.90614 1.71518 1.49378 1.34903 1.21804 0.89900 1.04470 1.01028 1.20873 0.96056 0.94827 0.96509 0.91688 1.20558 1.00000 0.94789 0.97637 1.22137 0.97340 1.00197 0.98838 1.22272 0.96529 0.98744 1.00294 1.20501 1.00182 0.94771 0.97303 1.21689 0.93256 1.02225 0.97929 1.42603 1.78319 1.10311 1.06042 1.19579 1.34773 0.94187 0.88133 0.90429 1.25447 1.03052 0.96687 1.01055 1.69818 1.52593 1.10128 1.29220 0.85236 0.76525 0.78261 0.80269 1.22177 1.22577 1.19241 0.90864 0.94058 0.93652 0.90425 0.93576 0.75403 0.88226 0.86493 0.91806 0.92024 0.88130 0.86837 0.90389 0.89395 0.89815 0.91582 0.79553 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 9.49 71.98 0.68 -4.50 16 2 C 0.16 5.79 3.05 44.99 0.14 5.92 16 3 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 4 C 0.12 4.14 5.23 86.38 0.45 4.59 16 5 N -0.72 -23.13 5.39 -463.06 -2.49 -25.62 16 6 C 0.51 15.96 7.59 87.66 0.67 16.63 16 7 O -0.58 -21.90 14.07 -3.03 -0.04 -21.94 16 8 C -0.13 -3.14 5.18 29.85 0.15 -2.98 16 9 C -0.06 -1.48 1.87 -10.65 -0.02 -1.50 16 10 H 0.06 1.69 7.94 -2.39 -0.02 1.67 16 11 C -0.09 -2.46 5.05 29.66 0.15 -2.31 16 12 C -0.17 -3.85 9.80 27.04 0.27 -3.58 16 13 C -0.16 -3.07 9.80 27.03 0.27 -2.81 16 14 C -0.09 -1.46 6.11 29.65 0.18 -1.28 16 15 C -0.11 -1.99 5.31 30.73 0.16 -1.83 16 16 N -0.73 -33.96 4.56 -322.94 -1.47 -35.44 16 17 C -0.23 -12.10 9.93 84.03 0.83 -11.27 16 18 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 20 N -0.97 -56.73 13.06 21.65 0.28 -56.45 16 21 Si 0.97 44.21 29.55 68.60 2.03 46.24 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.41 13.34 8.14 -92.72 -0.75 12.58 16 31 H 0.10 2.31 8.11 -2.39 -0.02 2.29 16 32 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 1.69 8.08 -2.39 -0.02 1.67 16 34 H 0.06 1.99 6.27 -2.39 -0.01 1.97 16 35 H 0.10 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.11 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 41 H 0.37 19.12 7.80 -92.71 -0.72 18.40 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -62.78 339.95 2.21 -60.56 By element: Atomic # 1 Polarization: 41.36 SS G_CDS: -0.48 Total: 40.87 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.40 Total: -8.23 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -3.69 Total: -117.51 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.04 Total: -21.94 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -62.78 2.21 -60.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317253064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.878 kcal (2) G-P(sol) polarization free energy of solvation -62.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds