Wall clock time and date at job start Mon Mar 30 2020 19:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32984 * 120.00373 * 2 1 4 4 C 1.47103 * 120.00271 * 172.95638 * 3 2 1 5 5 O 1.21617 * 119.99429 * 354.04389 * 4 3 2 6 6 N 1.34770 * 120.00197 * 174.03707 * 4 3 2 7 7 C 1.46508 * 119.99848 * 180.27805 * 6 4 3 8 8 C 1.52999 * 109.46869 * 179.72599 * 7 6 4 9 9 C 1.53003 * 109.46950 * 180.02562 * 8 7 6 10 10 H 1.08993 * 109.47111 * 54.99792 * 9 8 7 11 11 C 1.52999 * 109.47208 * 175.00078 * 9 8 7 12 12 N 1.46502 * 109.46600 * 294.99694 * 9 8 7 13 13 C 1.36937 * 119.99711 * 155.00208 * 12 9 8 14 14 H 1.08008 * 119.99942 * 0.02562 * 13 12 9 15 15 C 1.38810 * 120.00285 * 179.97438 * 13 12 9 16 16 N 1.31620 * 119.99783 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00281 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47150 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47426 * 120.00002 * 17 15 13 20 20 H 1.48500 * 109.47037 * 240.00460 * 17 15 13 21 21 C 1.50700 * 119.99334 * 180.02562 * 2 1 3 22 22 C 1.53003 * 117.50395 * 1.64708 * 21 2 1 23 23 C 1.52997 * 117.50198 * 293.02168 * 21 2 1 24 24 H 1.09004 * 109.47308 * 89.99251 * 1 2 3 25 25 H 1.08996 * 109.47808 * 209.99834 * 1 2 3 26 26 H 1.09001 * 109.46733 * 330.00252 * 1 2 3 27 27 H 1.08007 * 120.00288 * 352.96064 * 3 2 1 28 28 H 0.96994 * 120.00349 * 0.02562 * 6 4 3 29 29 H 1.08997 * 109.47009 * 299.72757 * 7 6 4 30 30 H 1.08996 * 109.47014 * 59.72594 * 7 6 4 31 31 H 1.09006 * 109.47208 * 299.99803 * 8 7 6 32 32 H 1.08996 * 109.47306 * 60.00174 * 8 7 6 33 33 H 1.09002 * 109.47028 * 299.99796 * 11 9 8 34 34 H 1.09003 * 109.47046 * 59.99358 * 11 9 8 35 35 H 1.08996 * 109.47255 * 179.97438 * 11 9 8 36 36 H 0.96996 * 120.00576 * 335.00446 * 12 9 8 37 37 H 0.97002 * 119.99851 * 179.97438 * 16 15 13 38 38 H 1.09000 * 115.54744 * 147.35411 * 21 2 1 39 39 H 1.08998 * 117.49439 * 0.02562 * 22 21 2 40 40 H 1.08997 * 117.49986 * 145.01568 * 22 21 2 41 41 H 1.09001 * 117.49935 * 214.98243 * 23 21 2 42 42 H 1.09009 * 117.49682 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 3.6347 1.1564 0.1562 5 8 4.2242 0.1195 0.3935 6 7 4.3215 2.3098 0.0363 7 6 5.7789 2.3135 0.1858 8 6 6.3072 3.7370 -0.0021 9 6 7.8293 3.7407 0.1534 10 1 8.2669 3.0200 -0.5373 11 6 8.3703 5.1378 -0.1569 12 7 8.1805 3.3753 1.5280 13 6 9.4024 2.8189 1.7976 14 1 10.1073 2.6499 0.9969 15 6 9.7354 2.4731 3.1000 16 7 8.8766 2.6796 4.0758 17 14 11.4019 1.7135 3.4677 18 1 12.1766 1.5856 2.2072 19 1 12.1425 2.5810 4.4185 20 1 11.2113 0.3693 4.0694 21 6 2.2604 -1.3052 -0.0006 22 6 1.4387 -2.5953 -0.0402 23 6 2.1539 -2.1830 1.2480 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6382 2.0835 -0.1146 28 1 3.8513 3.1368 -0.1527 29 1 6.0429 1.9564 1.1812 30 1 6.2228 1.6591 -0.5644 31 1 6.0432 4.0940 -0.9977 32 1 5.8634 4.3913 0.7481 33 1 8.1089 5.4097 -1.1796 34 1 7.9326 5.8586 0.5338 35 1 9.4545 5.1406 -0.0457 36 1 7.5476 3.5274 2.2471 37 1 9.1092 2.4376 4.9859 38 1 3.2125 -1.2981 -0.5311 39 1 0.3532 -2.4999 -0.0662 40 1 1.8501 -3.4371 -0.5970 41 1 3.0359 -2.7537 1.5387 42 1 1.5392 -1.8162 2.0702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317391157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:36 Heat of formation + Delta-G solvation = 3.971812 kcal Electronic energy + Delta-G solvation = -19861.468455 eV Core-core repulsion = 16842.655668 eV Total energy + Delta-G solvation = -3018.812787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71834 -37.78635 -36.44807 -34.22228 -33.45840 -32.19324 -29.50879 -28.44480 -27.56760 -24.12052 -23.45187 -22.41521 -22.23571 -20.68198 -19.79031 -18.55644 -17.25638 -16.87986 -16.03007 -15.38890 -14.96144 -14.67191 -14.47128 -13.88229 -13.66431 -13.45886 -13.22391 -13.04519 -12.78695 -12.47705 -12.39333 -11.99577 -11.63727 -11.50494 -11.36993 -11.05464 -10.88483 -10.80400 -10.70244 -10.57519 -10.40980 -10.21497 -9.91356 -9.61026 -9.31476 -8.99802 -8.87235 -8.58791 -6.91176 -5.71513 -3.00051 1.32604 3.45925 3.47437 3.51768 3.53073 3.55161 3.94641 4.47412 4.64153 4.70785 4.95227 5.00284 5.06404 5.25320 5.30836 5.34237 5.44856 5.45719 5.51802 5.60668 5.66293 5.73902 5.86579 5.92737 6.08771 6.11834 6.20072 6.21964 6.27434 6.38684 6.44144 6.49986 6.58614 6.75304 6.82569 6.90432 7.09652 7.75783 7.82052 8.46870 8.54816 9.58275 10.15301 10.49893 11.51266 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.003873 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.715764 B = 7227.158796 C = 8238.824794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.010 4.010 3 C -0.223 4.223 4 C 0.538 3.462 5 O -0.534 6.534 6 N -0.727 5.727 7 C 0.123 3.877 8 C -0.132 4.132 9 C 0.174 3.826 10 H 0.049 0.951 11 C -0.163 4.163 12 N -0.724 5.724 13 C -0.237 4.237 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.905 3.095 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.292 1.292 21 C -0.117 4.117 22 C -0.192 4.192 23 C -0.155 4.155 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.395 0.605 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.153 -2.418 -10.666 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 C -0.244 4.244 4 C 0.327 3.673 5 O -0.413 6.413 6 N -0.377 5.377 7 C 0.000 4.000 8 C -0.171 4.171 9 C 0.064 3.936 10 H 0.067 0.933 11 C -0.224 4.224 12 N -0.366 5.366 13 C -0.368 4.368 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.736 3.264 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.219 1.219 21 C -0.135 4.135 22 C -0.229 4.229 23 C -0.192 4.192 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.143 0.857 28 H 0.228 0.772 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.151 0.849 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.523 -3.236 -10.493 20.679 hybrid contribution 0.553 0.280 0.486 0.788 sum -16.970 -2.956 -10.007 19.921 Atomic orbital electron populations 1.20996 0.91312 1.03215 1.02822 1.21777 0.95049 0.93484 0.90856 1.22402 0.93771 0.98468 1.09740 1.18512 0.87641 0.83707 0.77429 1.90775 1.71026 1.31373 1.48123 1.46036 1.08902 1.09922 1.72882 1.21414 0.77595 0.97512 1.03467 1.22055 0.98362 0.95579 1.01088 1.20152 0.90380 0.94115 0.88976 0.93341 1.22426 1.01832 0.99498 0.98595 1.42463 1.17599 1.74063 1.02445 1.19274 0.92555 1.32286 0.92671 0.91176 1.24721 0.98179 1.02193 0.95828 1.69670 1.34977 1.53824 0.99627 0.86151 0.83806 0.78661 0.77783 1.20591 1.21983 1.21909 1.21467 1.00517 0.87738 1.03759 1.23129 0.98852 0.98740 1.02154 1.22800 1.02652 1.02481 0.91221 0.90446 0.90850 0.91034 0.85671 0.77199 0.89829 0.92013 0.92014 0.91666 0.94587 0.93542 0.92745 0.78291 0.93638 0.84852 0.88813 0.88750 0.88393 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.49 36.01 0.34 -0.60 16 2 C -0.01 -0.11 5.80 -101.17 -0.59 -0.70 16 3 C -0.22 -2.61 9.62 -37.81 -0.36 -2.97 16 4 C 0.54 8.36 7.67 -12.67 -0.10 8.27 16 5 O -0.53 -10.34 13.31 5.26 0.07 -10.27 16 6 N -0.73 -10.30 5.55 -61.49 -0.34 -10.64 16 7 C 0.12 2.12 5.56 -4.04 -0.02 2.09 16 8 C -0.13 -2.07 4.87 -26.73 -0.13 -2.20 16 9 C 0.17 3.40 2.89 -67.93 -0.20 3.20 16 10 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 11 C -0.16 -2.90 9.49 37.16 0.35 -2.54 16 12 N -0.72 -18.03 4.57 -53.42 -0.24 -18.28 16 13 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 14 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 15 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 17 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 21 C -0.12 -1.47 4.35 -91.77 -0.40 -1.87 16 22 C -0.19 -1.88 9.79 -26.73 -0.26 -2.14 16 23 C -0.15 -1.83 10.23 -26.73 -0.27 -2.10 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.50 6.37 -51.93 -0.33 0.17 16 26 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 27 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 28 H 0.39 4.24 8.46 -40.82 -0.35 3.90 16 29 H 0.08 1.80 7.75 -51.93 -0.40 1.39 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 37 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.13 2.03 6.24 -51.93 -0.32 1.71 16 39 H 0.09 0.75 6.31 -51.93 -0.33 0.42 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -32.70 347.26 -8.55 -41.25 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -7.08 Total: 11.58 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.88 Total: -8.82 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.14 Total: -56.82 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.70 -8.55 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317391157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.217 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds