Wall clock time and date at job start Mon Mar 30 2020 19:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32993 * 119.99620 * 2 1 4 4 C 1.47102 * 120.00400 * 353.10960 * 3 2 1 5 5 O 1.21610 * 119.99756 * 353.76976 * 4 3 2 6 6 N 1.34774 * 119.99940 * 173.76562 * 4 3 2 7 7 C 1.46505 * 119.99477 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46591 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.46901 * 179.97438 * 8 7 6 10 10 H 1.09006 * 109.46883 * 55.00191 * 9 8 7 11 11 C 1.53000 * 109.47406 * 174.99876 * 9 8 7 12 12 N 1.46501 * 109.47202 * 295.00276 * 9 8 7 13 13 C 1.36938 * 119.99899 * 155.00329 * 12 9 8 14 14 H 1.08000 * 119.99978 * 359.97438 * 13 12 9 15 15 C 1.38813 * 119.99452 * 179.97438 * 13 12 9 16 16 N 1.31617 * 120.00406 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99828 * 179.97438 * 15 13 12 18 18 H 1.48511 * 109.47006 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47225 * 119.99659 * 17 15 13 20 20 H 1.48493 * 109.47480 * 240.00097 * 17 15 13 21 21 C 1.50695 * 120.00222 * 180.02562 * 2 1 3 22 22 C 1.53002 * 117.49774 * 8.74458 * 21 2 1 23 23 C 1.53002 * 117.49976 * 300.08350 * 21 2 1 24 24 H 1.08995 * 109.46908 * 84.52947 * 1 2 3 25 25 H 1.08997 * 109.46457 * 204.53119 * 1 2 3 26 26 H 1.08995 * 109.46787 * 324.52906 * 1 2 3 27 27 H 1.08000 * 119.99896 * 173.10571 * 3 2 1 28 28 H 0.96995 * 120.00214 * 359.97438 * 6 4 3 29 29 H 1.08995 * 109.47448 * 60.00136 * 7 6 4 30 30 H 1.08997 * 109.47162 * 299.99479 * 7 6 4 31 31 H 1.09000 * 109.47340 * 299.99286 * 8 7 6 32 32 H 1.08993 * 109.47618 * 60.00101 * 8 7 6 33 33 H 1.09000 * 109.47034 * 59.99615 * 11 9 8 34 34 H 1.08994 * 109.47136 * 180.02562 * 11 9 8 35 35 H 1.09007 * 109.47067 * 300.00338 * 11 9 8 36 36 H 0.96997 * 120.00006 * 334.99543 * 12 9 8 37 37 H 0.97003 * 119.99828 * 180.02562 * 16 15 13 38 38 H 1.09006 * 115.54971 * 154.41659 * 21 2 1 39 39 H 1.08995 * 117.50081 * 0.02562 * 22 21 2 40 40 H 1.09000 * 117.49793 * 145.02331 * 22 21 2 41 41 H 1.09000 * 117.50314 * 214.98242 * 23 21 2 42 42 H 1.09004 * 117.49371 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4444 2.4211 -0.1528 5 8 0.2521 2.4136 -0.3923 6 7 2.0992 3.5925 -0.0274 7 6 1.3744 4.8566 -0.1791 8 6 2.3434 6.0257 0.0087 9 6 1.5867 7.3459 -0.1503 10 1 0.7425 7.3661 0.5390 11 6 2.5262 8.5129 0.1599 12 7 1.0970 7.4655 -1.5258 13 6 0.0051 8.2457 -1.7985 14 1 -0.4952 8.7726 -0.9994 15 6 -0.4585 8.3594 -3.1020 16 7 0.1516 7.7177 -4.0758 17 14 -1.9483 9.4231 -3.4739 18 1 -2.4475 10.0334 -2.2154 19 1 -1.5650 10.4965 -4.4258 20 1 -3.0166 8.5858 -4.0762 21 6 2.2606 -1.3050 -0.0006 22 6 1.4522 -2.5875 -0.2075 23 6 2.0247 -2.2575 1.1733 24 1 -0.3633 0.0980 -1.0229 25 1 -0.3632 -0.9349 0.4267 26 1 -0.3633 0.8369 0.5963 27 1 3.2461 1.1552 0.1123 28 1 3.0500 3.5985 0.1640 29 1 0.5847 4.9148 0.5699 30 1 0.9347 4.9061 -1.1752 31 1 2.7835 5.9765 1.0048 32 1 3.1328 5.9673 -0.7405 33 1 3.3705 8.4927 -0.5293 34 1 1.9870 9.4534 0.0470 35 1 2.8906 8.4239 1.1834 36 1 1.5462 6.9921 -2.2434 37 1 -0.1722 7.7975 -4.9867 38 1 3.2639 -1.2684 -0.4252 39 1 0.3754 -2.4872 -0.3436 40 1 1.9237 -3.3947 -0.7679 41 1 2.8726 -2.8479 1.5208 42 1 1.3248 -1.9399 1.9463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317391160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:44 Heat of formation + Delta-G solvation = 2.669188 kcal Electronic energy + Delta-G solvation = -19661.755999 eV Core-core repulsion = 16642.886726 eV Total energy + Delta-G solvation = -3018.869273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72038 -38.11205 -36.54599 -34.35680 -33.17071 -32.21495 -29.49194 -28.32923 -27.33821 -24.53042 -23.64257 -22.68985 -22.27569 -20.56792 -19.70106 -18.56530 -17.22655 -16.76861 -16.38014 -15.38528 -15.09671 -14.83313 -14.63357 -13.96860 -13.51222 -13.47671 -13.26266 -13.01301 -12.61965 -12.45088 -12.09660 -11.99292 -11.75046 -11.50440 -11.48563 -11.14626 -11.01187 -10.88540 -10.74338 -10.68868 -10.58742 -10.22550 -9.92186 -9.61142 -9.34954 -9.08490 -8.87695 -8.59110 -6.91210 -5.71513 -3.00032 1.31527 3.37204 3.47461 3.47820 3.52980 3.55190 3.67396 4.35393 4.54546 4.62304 4.64143 4.79119 4.97775 5.20074 5.29009 5.37007 5.44760 5.48015 5.57868 5.60576 5.73252 5.73777 5.76647 5.86079 5.92633 6.04483 6.11748 6.22091 6.37238 6.42868 6.44289 6.48118 6.58244 6.75011 6.81575 6.90367 7.09578 7.75824 7.80296 8.46855 8.52019 9.58256 10.15288 10.49862 11.51253 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024715 B = 0.003375 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.658357 B = 8293.854400 C = 9077.631636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.006 4.006 3 C -0.224 4.224 4 C 0.539 3.461 5 O -0.538 6.538 6 N -0.726 5.726 7 C 0.123 3.877 8 C -0.132 4.132 9 C 0.174 3.826 10 H 0.049 0.951 11 C -0.163 4.163 12 N -0.724 5.724 13 C -0.236 4.236 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.905 3.095 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.292 1.292 21 C -0.132 4.132 22 C -0.173 4.173 23 C -0.168 4.168 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.395 0.605 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.035 0.965 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.853 -17.652 11.365 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.008 4.008 3 C -0.245 4.245 4 C 0.328 3.672 5 O -0.417 6.417 6 N -0.376 5.376 7 C 0.000 4.000 8 C -0.171 4.171 9 C 0.064 3.936 10 H 0.067 0.933 11 C -0.223 4.223 12 N -0.366 5.366 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.736 3.264 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.219 1.219 21 C -0.150 4.150 22 C -0.209 4.209 23 C -0.205 4.205 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.229 0.771 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.827 -17.510 11.197 21.877 hybrid contribution 0.061 0.568 -0.515 0.769 sum 6.888 -16.942 10.682 21.180 Atomic orbital electron populations 1.21172 0.90766 1.02229 1.03943 1.21753 0.96193 0.92239 0.90652 1.22323 1.00125 0.92101 1.09923 1.18472 0.87078 0.84206 0.77444 1.90784 1.15101 1.87577 1.48275 1.46019 1.12613 1.06306 1.72711 1.21426 0.94488 0.80621 1.03492 1.22055 0.98513 0.95412 1.01100 1.20155 0.94113 0.90402 0.88964 0.93330 1.22425 1.00274 1.01055 0.98593 1.42463 1.34348 1.57321 1.02430 1.19268 1.04188 1.20631 0.92643 0.91175 1.24728 0.99583 1.00822 0.95848 1.69667 1.42272 1.46509 0.99655 0.86149 0.82699 0.79753 0.77792 1.20592 1.21996 1.21891 1.21279 1.00159 0.88857 1.04683 1.23081 1.00617 0.97694 0.99538 1.22993 1.03681 1.02065 0.91740 0.90089 0.92870 0.88977 0.85834 0.77140 0.91969 0.89804 0.91997 0.91658 0.93537 0.92743 0.94594 0.78293 0.93632 0.86675 0.87927 0.88318 0.88305 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 7.91 36.01 0.28 -1.23 16 2 C -0.01 -0.07 5.81 -101.17 -0.59 -0.66 16 3 C -0.22 -2.66 9.67 -37.81 -0.37 -3.02 16 4 C 0.54 8.39 7.61 -12.67 -0.10 8.30 16 5 O -0.54 -10.43 13.28 5.27 0.07 -10.36 16 6 N -0.73 -10.31 5.55 -61.49 -0.34 -10.66 16 7 C 0.12 2.11 5.56 -4.04 -0.02 2.09 16 8 C -0.13 -2.07 4.87 -26.73 -0.13 -2.20 16 9 C 0.17 3.39 2.89 -67.93 -0.20 3.20 16 10 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 11 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 12 N -0.72 -18.00 4.57 -53.42 -0.24 -18.25 16 13 C -0.24 -6.60 9.93 -15.06 -0.15 -6.74 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 17 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 C -0.13 -1.11 6.00 -91.77 -0.55 -1.67 16 22 C -0.17 -1.25 9.77 -26.69 -0.26 -1.51 16 23 C -0.17 -1.17 10.10 -26.69 -0.27 -1.44 16 24 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 25 H 0.05 0.51 6.31 -51.93 -0.33 0.19 16 26 H 0.09 1.33 6.12 -51.93 -0.32 1.01 16 27 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.40 4.27 8.46 -40.82 -0.35 3.93 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.80 7.75 -51.93 -0.40 1.39 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 37 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.76 6.42 -51.93 -0.33 0.43 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -32.56 347.04 -8.75 -41.31 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -7.08 Total: 10.72 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.09 Total: -7.95 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.14 Total: -56.80 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.56 -8.75 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317391160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.983 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds