Wall clock time and date at job start Mon Mar 30 2020 19:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32993 * 119.99620 * 2 1 4 4 C 1.47102 * 120.00400 * 353.10960 * 3 2 1 5 5 O 1.21610 * 119.99756 * 353.76976 * 4 3 2 6 6 N 1.34774 * 119.99940 * 173.76562 * 4 3 2 7 7 C 1.46505 * 119.99477 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46591 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.46901 * 179.97438 * 8 7 6 10 10 H 1.09006 * 109.46883 * 55.00191 * 9 8 7 11 11 C 1.53000 * 109.47406 * 174.99876 * 9 8 7 12 12 N 1.46501 * 109.47202 * 295.00276 * 9 8 7 13 13 C 1.36938 * 119.99899 * 155.00329 * 12 9 8 14 14 H 1.08000 * 119.99978 * 359.97438 * 13 12 9 15 15 C 1.38813 * 119.99452 * 179.97438 * 13 12 9 16 16 N 1.31617 * 120.00406 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99828 * 179.97438 * 15 13 12 18 18 H 1.48511 * 109.47006 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47225 * 119.99659 * 17 15 13 20 20 H 1.48493 * 109.47480 * 240.00097 * 17 15 13 21 21 C 1.50695 * 120.00222 * 180.02562 * 2 1 3 22 22 C 1.53002 * 117.49774 * 8.74458 * 21 2 1 23 23 C 1.53002 * 117.49976 * 300.08350 * 21 2 1 24 24 H 1.08995 * 109.46908 * 84.52947 * 1 2 3 25 25 H 1.08997 * 109.46457 * 204.53119 * 1 2 3 26 26 H 1.08995 * 109.46787 * 324.52906 * 1 2 3 27 27 H 1.08000 * 119.99896 * 173.10571 * 3 2 1 28 28 H 0.96995 * 120.00214 * 359.97438 * 6 4 3 29 29 H 1.08995 * 109.47448 * 60.00136 * 7 6 4 30 30 H 1.08997 * 109.47162 * 299.99479 * 7 6 4 31 31 H 1.09000 * 109.47340 * 299.99286 * 8 7 6 32 32 H 1.08993 * 109.47618 * 60.00101 * 8 7 6 33 33 H 1.09000 * 109.47034 * 59.99615 * 11 9 8 34 34 H 1.08994 * 109.47136 * 180.02562 * 11 9 8 35 35 H 1.09007 * 109.47067 * 300.00338 * 11 9 8 36 36 H 0.96997 * 120.00006 * 334.99543 * 12 9 8 37 37 H 0.97003 * 119.99828 * 180.02562 * 16 15 13 38 38 H 1.09006 * 115.54971 * 154.41659 * 21 2 1 39 39 H 1.08995 * 117.50081 * 0.02562 * 22 21 2 40 40 H 1.09000 * 117.49793 * 145.02331 * 22 21 2 41 41 H 1.09000 * 117.50314 * 214.98242 * 23 21 2 42 42 H 1.09004 * 117.49371 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4444 2.4211 -0.1528 5 8 0.2521 2.4136 -0.3923 6 7 2.0992 3.5925 -0.0274 7 6 1.3744 4.8566 -0.1791 8 6 2.3434 6.0257 0.0087 9 6 1.5867 7.3459 -0.1503 10 1 0.7425 7.3661 0.5390 11 6 2.5262 8.5129 0.1599 12 7 1.0970 7.4655 -1.5258 13 6 0.0051 8.2457 -1.7985 14 1 -0.4952 8.7726 -0.9994 15 6 -0.4585 8.3594 -3.1020 16 7 0.1516 7.7177 -4.0758 17 14 -1.9483 9.4231 -3.4739 18 1 -2.4475 10.0334 -2.2154 19 1 -1.5650 10.4965 -4.4258 20 1 -3.0166 8.5858 -4.0762 21 6 2.2606 -1.3050 -0.0006 22 6 1.4522 -2.5875 -0.2075 23 6 2.0247 -2.2575 1.1733 24 1 -0.3633 0.0980 -1.0229 25 1 -0.3632 -0.9349 0.4267 26 1 -0.3633 0.8369 0.5963 27 1 3.2461 1.1552 0.1123 28 1 3.0500 3.5985 0.1640 29 1 0.5847 4.9148 0.5699 30 1 0.9347 4.9061 -1.1752 31 1 2.7835 5.9765 1.0048 32 1 3.1328 5.9673 -0.7405 33 1 3.3705 8.4927 -0.5293 34 1 1.9870 9.4534 0.0470 35 1 2.8906 8.4239 1.1834 36 1 1.5462 6.9921 -2.2434 37 1 -0.1722 7.7975 -4.9867 38 1 3.2639 -1.2684 -0.4252 39 1 0.3754 -2.4872 -0.3436 40 1 1.9237 -3.3947 -0.7679 41 1 2.8726 -2.8479 1.5208 42 1 1.3248 -1.9399 1.9463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317391160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:43 Heat of formation + Delta-G solvation = -18.595331 kcal Electronic energy + Delta-G solvation = -19662.678097 eV Core-core repulsion = 16642.886726 eV Total energy + Delta-G solvation = -3019.791372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.90217 -38.90889 -38.08961 -35.85465 -34.15125 -34.07605 -31.17627 -29.88155 -28.42844 -25.96341 -25.25004 -23.57077 -23.19425 -21.85759 -21.13065 -19.53513 -19.21827 -17.90830 -17.21495 -16.96352 -16.37315 -16.23680 -15.74937 -15.45696 -15.33200 -14.73362 -14.54631 -14.13141 -13.93649 -13.82417 -13.52331 -13.23581 -12.89808 -12.85225 -12.63212 -12.46198 -12.28223 -12.22802 -12.16962 -12.09836 -11.84193 -11.62231 -11.58266 -11.32128 -10.96603 -10.59081 -10.16947 -9.71116 -8.98191 -7.93143 -5.19972 0.35046 1.45045 1.46535 1.55728 2.26880 2.32284 2.56572 3.02262 3.41149 3.59072 3.87535 3.91767 3.96962 4.01189 4.13580 4.14826 4.24196 4.32467 4.38847 4.66175 4.67063 4.74257 4.77207 4.82443 4.89070 5.00471 5.02752 5.09770 5.11760 5.15675 5.22735 5.26796 5.39722 5.49444 5.53837 5.55822 5.57879 5.61808 6.30056 6.68058 7.35338 7.35908 8.13800 8.35064 9.30738 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024715 B = 0.003375 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.658357 B = 8293.854400 C = 9077.631636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.000 4.000 3 C -0.233 4.233 4 C 0.529 3.471 5 O -0.588 6.588 6 N -0.712 5.712 7 C 0.134 3.866 8 C -0.115 4.115 9 C 0.163 3.837 10 H 0.042 0.958 11 C -0.153 4.153 12 N -0.736 5.736 13 C -0.231 4.231 14 H 0.074 0.926 15 C -0.080 4.080 16 N -0.971 5.971 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.293 1.293 20 H -0.298 1.298 21 C -0.144 4.144 22 C -0.173 4.173 23 C -0.156 4.156 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.159 0.841 28 H 0.416 0.584 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.371 0.629 37 H 0.248 0.752 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.672 -18.772 13.262 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.002 4.002 3 C -0.253 4.253 4 C 0.320 3.680 5 O -0.471 6.471 6 N -0.364 5.364 7 C 0.010 3.990 8 C -0.153 4.153 9 C 0.055 3.945 10 H 0.060 0.940 11 C -0.213 4.213 12 N -0.376 5.376 13 C -0.363 4.363 14 H 0.092 0.908 15 C -0.272 4.272 16 N -0.622 5.622 17 Si 0.797 3.203 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.226 1.226 21 C -0.162 4.162 22 C -0.210 4.210 23 C -0.193 4.193 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.176 0.824 28 H 0.253 0.747 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.203 0.797 37 H 0.057 0.943 38 H 0.149 0.851 39 H 0.114 0.886 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.697 -18.618 13.164 24.404 hybrid contribution -0.519 0.843 -1.006 1.411 sum 8.179 -17.775 12.158 23.036 Atomic orbital electron populations 1.21079 0.92143 1.02319 1.02451 1.22010 0.95591 0.93735 0.88868 1.22356 1.01495 0.90111 1.11360 1.19220 0.86753 0.85633 0.76415 1.90770 1.17420 1.88318 1.50551 1.45815 1.13469 1.04996 1.72117 1.21057 0.95006 0.82845 1.00086 1.21907 0.97481 0.92222 1.03710 1.20465 0.94808 0.93310 0.85914 0.94038 1.22258 0.99281 0.98696 1.01031 1.42669 1.33810 1.56723 1.04435 1.19639 1.04458 1.19624 0.92614 0.90804 1.25508 1.02705 1.02939 0.96026 1.69820 1.44073 1.48657 0.99659 0.85153 0.79323 0.77966 0.77867 1.19000 1.22005 1.22573 1.21327 1.00693 0.87580 1.06555 1.23185 1.00340 0.97293 1.00150 1.23090 1.04080 1.00892 0.91223 0.91935 0.90478 0.91668 0.82358 0.74731 0.93325 0.94867 0.87690 0.91051 0.93612 0.94824 0.90552 0.79688 0.94289 0.85084 0.88553 0.86683 0.86284 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 7.91 71.24 0.56 -2.51 16 2 C 0.00 0.00 5.81 -17.62 -0.10 -0.10 16 3 C -0.23 -5.22 9.67 23.43 0.23 -4.99 16 4 C 0.53 16.63 7.61 86.57 0.66 17.29 16 5 O -0.59 -24.06 13.28 -4.06 -0.05 -24.12 16 6 N -0.71 -19.79 5.55 -466.70 -2.59 -22.38 16 7 C 0.13 4.68 5.56 86.38 0.48 5.16 16 8 C -0.11 -3.39 4.87 30.60 0.15 -3.25 16 9 C 0.16 6.23 2.89 44.99 0.13 6.36 16 10 H 0.04 1.64 8.08 -2.38 -0.02 1.62 16 11 C -0.15 -5.08 9.49 71.98 0.68 -4.40 16 12 N -0.74 -37.22 4.57 -322.93 -1.48 -38.70 16 13 C -0.23 -13.11 9.93 84.03 0.83 -12.27 16 14 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 15 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 16 N -0.97 -61.41 13.06 21.65 0.28 -61.13 16 17 Si 0.97 47.94 29.55 68.60 2.03 49.97 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 20 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 21 C -0.14 -2.06 6.00 -11.54 -0.07 -2.12 16 22 C -0.17 -2.08 9.77 30.62 0.30 -1.78 16 23 C -0.16 -1.70 10.10 30.62 0.31 -1.40 16 24 H 0.06 1.77 8.05 -2.39 -0.02 1.75 16 25 H 0.08 1.47 6.31 -2.39 -0.02 1.45 16 26 H 0.06 1.99 6.12 -2.39 -0.01 1.98 16 27 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 28 H 0.42 8.01 8.46 -92.71 -0.78 7.23 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.03 1.50 7.75 -2.39 -0.02 1.48 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.37 20.34 7.80 -92.71 -0.72 19.62 16 37 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.10 1.28 6.42 -2.39 -0.02 1.26 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -74.13 347.04 2.32 -71.81 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.50 Total: 32.83 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.63 Total: -8.29 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -3.79 Total: -122.20 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.05 Total: -24.12 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -74.13 2.32 -71.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317391160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.216 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds