Wall clock time and date at job start Mon Mar 30 2020 19:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32995 * 119.99886 * 2 1 4 4 C 1.47100 * 120.00411 * 353.10084 * 3 2 1 5 5 O 1.21616 * 119.99713 * 353.77415 * 4 3 2 6 6 N 1.34772 * 120.00612 * 173.77417 * 4 3 2 7 7 C 1.46494 * 120.00182 * 179.72661 * 6 4 3 8 8 C 1.53006 * 109.47264 * 180.27219 * 7 6 4 9 9 C 1.53001 * 109.47375 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46989 * 305.00468 * 9 8 7 11 11 C 1.52999 * 109.47088 * 185.00018 * 9 8 7 12 12 N 1.46496 * 109.46977 * 65.00132 * 9 8 7 13 13 C 1.36939 * 119.99792 * 205.00022 * 12 9 8 14 14 H 1.07993 * 120.00149 * 359.97438 * 13 12 9 15 15 C 1.38820 * 119.99812 * 179.97438 * 13 12 9 16 16 N 1.31616 * 119.99469 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00056 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47440 * 89.99545 * 17 15 13 19 19 H 1.48501 * 109.47046 * 209.99808 * 17 15 13 20 20 H 1.48502 * 109.47252 * 329.99288 * 17 15 13 21 21 C 1.50700 * 120.00215 * 179.97438 * 2 1 3 22 22 C 1.52996 * 117.49596 * 8.74794 * 21 2 1 23 23 C 1.52993 * 117.49933 * 300.08828 * 21 2 1 24 24 H 1.08994 * 109.47273 * 84.53379 * 1 2 3 25 25 H 1.08996 * 109.47132 * 204.53915 * 1 2 3 26 26 H 1.09003 * 109.46935 * 324.53829 * 1 2 3 27 27 H 1.08009 * 119.99902 * 173.10586 * 3 2 1 28 28 H 0.97003 * 119.99419 * 359.97438 * 6 4 3 29 29 H 1.08994 * 109.47249 * 300.27112 * 7 6 4 30 30 H 1.09004 * 109.46986 * 60.27530 * 7 6 4 31 31 H 1.09007 * 109.46952 * 300.00421 * 8 7 6 32 32 H 1.08998 * 109.46932 * 59.99819 * 8 7 6 33 33 H 1.09004 * 109.46943 * 300.00338 * 11 9 8 34 34 H 1.09001 * 109.47251 * 60.00070 * 11 9 8 35 35 H 1.08997 * 109.46941 * 179.97438 * 11 9 8 36 36 H 0.96998 * 120.00239 * 24.99428 * 12 9 8 37 37 H 0.97004 * 119.99229 * 180.02562 * 16 15 13 38 38 H 1.08997 * 115.54975 * 154.41442 * 21 2 1 39 39 H 1.09002 * 117.49978 * 359.97438 * 22 21 2 40 40 H 1.09005 * 117.49969 * 145.02147 * 22 21 2 41 41 H 1.08998 * 117.49960 * 214.97590 * 23 21 2 42 42 H 1.09005 * 117.50092 * 359.97108 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4444 2.4211 -0.1530 5 8 0.2521 2.4136 -0.3926 6 7 2.0991 3.5925 -0.0278 7 6 1.3758 4.8565 -0.1861 8 6 2.3457 6.0256 -0.0032 9 6 1.5902 7.3458 -0.1679 10 1 1.0770 7.3532 -1.1295 11 6 2.5802 8.5108 -0.1091 12 7 0.6084 7.4844 0.9106 13 6 -0.5018 8.2653 0.7295 14 1 -0.6535 8.7793 -0.2081 15 6 -1.4324 8.3962 1.7513 16 7 -2.4998 9.1463 1.5770 17 14 -1.1698 7.5077 3.3733 18 1 -0.4017 8.3805 4.2972 19 1 -2.4863 7.1831 3.9787 20 1 -0.4125 6.2530 3.1335 21 6 2.2605 -1.3051 0.0006 22 6 1.4521 -2.5876 -0.2052 23 6 2.0245 -2.2565 1.1752 24 1 -0.3633 0.0979 -1.0229 25 1 -0.3633 -0.9348 0.4268 26 1 -0.3633 0.8371 0.5962 27 1 3.2461 1.1552 0.1123 28 1 3.0501 3.5985 0.1636 29 1 0.9366 4.9014 -1.1826 30 1 0.5858 4.9193 0.5624 31 1 2.7851 5.9807 0.9934 32 1 3.1357 5.9628 -0.7516 33 1 3.0934 8.5033 0.8526 34 1 3.3107 8.4077 -0.9115 35 1 2.0420 9.4513 -0.2269 36 1 0.7447 7.0230 1.7528 37 1 -3.1498 9.2381 2.2912 38 1 3.2637 -1.2689 -0.4241 39 1 0.3751 -2.4875 -0.3407 40 1 1.9236 -3.3954 -0.7650 41 1 2.8724 -2.8466 1.5231 42 1 1.3246 -1.9383 1.9479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317391162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:47 Heat of formation + Delta-G solvation = 6.670640 kcal Electronic energy + Delta-G solvation = -19767.155454 eV Core-core repulsion = 16748.459697 eV Total energy + Delta-G solvation = -3018.695757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.81641 -38.18324 -36.73829 -34.49159 -33.24390 -32.22360 -29.92417 -28.69520 -27.42632 -24.59983 -23.43374 -22.72760 -22.28170 -20.66073 -19.86646 -18.66676 -17.58973 -16.85550 -16.45352 -15.52158 -15.24155 -14.92235 -14.69393 -14.02081 -13.70160 -13.56087 -13.19195 -13.08447 -12.70252 -12.50637 -12.17114 -12.13965 -11.90881 -11.79464 -11.54462 -11.19920 -11.16288 -11.02265 -10.79030 -10.74517 -10.61966 -10.37226 -9.98877 -9.54921 -9.44961 -9.16218 -8.91014 -8.70558 -7.23735 -5.72883 -3.08168 1.23812 3.29566 3.35838 3.41069 3.43812 3.48956 3.61612 4.29074 4.49584 4.57252 4.63180 4.72542 4.91250 5.10668 5.19271 5.24811 5.25259 5.43128 5.51071 5.53578 5.61560 5.67124 5.67866 5.72535 5.80257 5.97913 5.99330 6.10461 6.26722 6.28858 6.36222 6.38402 6.46130 6.54801 6.69285 6.80577 6.99665 7.69038 8.03387 8.41467 8.46253 9.24608 9.97224 10.16520 11.45699 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022557 B = 0.003742 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.983932 B = 7481.368284 C = 8214.875341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.004 4.004 3 C -0.226 4.226 4 C 0.539 3.461 5 O -0.537 6.537 6 N -0.728 5.728 7 C 0.121 3.879 8 C -0.136 4.136 9 C 0.179 3.821 10 H 0.058 0.942 11 C -0.164 4.164 12 N -0.748 5.748 13 C -0.241 4.241 14 H 0.090 0.910 15 C 0.005 3.995 16 N -0.935 5.935 17 Si 0.883 3.117 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.133 4.133 22 C -0.172 4.172 23 C -0.167 4.167 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.396 0.604 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.394 -21.074 -3.047 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.006 4.006 3 C -0.247 4.247 4 C 0.328 3.672 5 O -0.417 6.417 6 N -0.378 5.378 7 C -0.002 4.002 8 C -0.174 4.174 9 C 0.070 3.930 10 H 0.076 0.924 11 C -0.224 4.224 12 N -0.392 5.392 13 C -0.371 4.371 14 H 0.108 0.892 15 C -0.191 4.191 16 N -0.583 5.583 17 Si 0.714 3.286 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.151 4.151 22 C -0.209 4.209 23 C -0.204 4.204 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.142 0.858 28 H 0.229 0.771 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.334 -20.893 -3.319 25.007 hybrid contribution 0.757 -0.445 1.355 1.615 sum 14.091 -21.338 -1.964 25.646 Atomic orbital electron populations 1.21184 0.90712 1.02465 1.03869 1.21771 0.96218 0.92253 0.90321 1.22303 1.00128 0.92024 1.10250 1.18499 0.87049 0.84221 0.77437 1.90791 1.14977 1.87580 1.48308 1.46020 1.12690 1.06259 1.72849 1.21429 0.95229 0.80749 1.02783 1.22105 0.98111 0.95369 1.01841 1.20124 0.89408 0.90381 0.93123 0.92424 1.22393 0.99045 1.01116 0.99817 1.42825 1.24173 1.58535 1.13619 1.19066 0.96494 1.20608 1.00896 0.89184 1.24656 0.96803 0.99758 0.97892 1.69700 1.12343 1.43018 1.33199 0.86568 0.77030 0.79740 0.85297 1.21218 1.21784 1.20370 1.21278 1.00113 0.88851 1.04834 1.23084 1.00606 0.97604 0.99613 1.22999 1.03719 1.01963 0.91751 0.90131 0.92753 0.88868 0.85802 0.77066 0.91487 0.90366 0.91801 0.91467 0.93644 0.94230 0.92237 0.80711 0.93113 0.86684 0.87914 0.88304 0.88259 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 7.91 36.00 0.28 -1.21 16 2 C 0.00 -0.04 5.81 -101.17 -0.59 -0.63 16 3 C -0.23 -2.54 9.67 -37.81 -0.37 -2.90 16 4 C 0.54 7.99 7.61 -12.67 -0.10 7.89 16 5 O -0.54 -10.03 13.28 5.26 0.07 -9.96 16 6 N -0.73 -9.71 5.55 -61.49 -0.34 -10.05 16 7 C 0.12 1.96 5.56 -4.04 -0.02 1.94 16 8 C -0.14 -1.97 4.87 -26.73 -0.13 -2.10 16 9 C 0.18 3.33 2.89 -67.93 -0.20 3.13 16 10 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 11 C -0.16 -2.76 9.49 37.16 0.35 -2.41 16 12 N -0.75 -17.48 4.38 -53.43 -0.23 -17.71 16 13 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 14 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 15 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 16 N -0.93 -29.82 13.97 55.49 0.78 -29.04 16 17 Si 0.88 22.64 27.74 -169.99 -4.71 17.92 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 20 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 21 C -0.13 -1.06 6.00 -91.78 -0.55 -1.61 16 22 C -0.17 -1.18 9.77 -26.70 -0.26 -1.44 16 23 C -0.17 -1.15 10.10 -26.70 -0.27 -1.42 16 24 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 25 H 0.05 0.52 6.31 -51.93 -0.33 0.19 16 26 H 0.09 1.37 6.12 -51.93 -0.32 1.05 16 27 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 28 H 0.40 3.91 8.46 -40.82 -0.35 3.57 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.08 1.55 7.75 -51.93 -0.40 1.15 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.36 8.36 5.66 -40.82 -0.23 8.13 16 37 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 38 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.72 6.42 -51.93 -0.33 0.39 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -33.52 343.92 -8.39 -41.91 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.04 Total: 9.41 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.10 Total: -7.67 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.20 Total: -56.80 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.92 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.52 -8.39 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317391162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.582 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds