Wall clock time and date at job start Mon Mar 30 2020 19:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32995 * 119.99886 * 2 1 4 4 C 1.47100 * 120.00411 * 353.10084 * 3 2 1 5 5 O 1.21616 * 119.99713 * 353.77415 * 4 3 2 6 6 N 1.34772 * 120.00612 * 173.77417 * 4 3 2 7 7 C 1.46494 * 120.00182 * 179.72661 * 6 4 3 8 8 C 1.53006 * 109.47264 * 180.27219 * 7 6 4 9 9 C 1.53001 * 109.47375 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46989 * 305.00468 * 9 8 7 11 11 C 1.52999 * 109.47088 * 185.00018 * 9 8 7 12 12 N 1.46496 * 109.46977 * 65.00132 * 9 8 7 13 13 C 1.36939 * 119.99792 * 205.00022 * 12 9 8 14 14 H 1.07993 * 120.00149 * 359.97438 * 13 12 9 15 15 C 1.38820 * 119.99812 * 179.97438 * 13 12 9 16 16 N 1.31616 * 119.99469 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00056 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47440 * 89.99545 * 17 15 13 19 19 H 1.48501 * 109.47046 * 209.99808 * 17 15 13 20 20 H 1.48502 * 109.47252 * 329.99288 * 17 15 13 21 21 C 1.50700 * 120.00215 * 179.97438 * 2 1 3 22 22 C 1.52996 * 117.49596 * 8.74794 * 21 2 1 23 23 C 1.52993 * 117.49933 * 300.08828 * 21 2 1 24 24 H 1.08994 * 109.47273 * 84.53379 * 1 2 3 25 25 H 1.08996 * 109.47132 * 204.53915 * 1 2 3 26 26 H 1.09003 * 109.46935 * 324.53829 * 1 2 3 27 27 H 1.08009 * 119.99902 * 173.10586 * 3 2 1 28 28 H 0.97003 * 119.99419 * 359.97438 * 6 4 3 29 29 H 1.08994 * 109.47249 * 300.27112 * 7 6 4 30 30 H 1.09004 * 109.46986 * 60.27530 * 7 6 4 31 31 H 1.09007 * 109.46952 * 300.00421 * 8 7 6 32 32 H 1.08998 * 109.46932 * 59.99819 * 8 7 6 33 33 H 1.09004 * 109.46943 * 300.00338 * 11 9 8 34 34 H 1.09001 * 109.47251 * 60.00070 * 11 9 8 35 35 H 1.08997 * 109.46941 * 179.97438 * 11 9 8 36 36 H 0.96998 * 120.00239 * 24.99428 * 12 9 8 37 37 H 0.97004 * 119.99229 * 180.02562 * 16 15 13 38 38 H 1.08997 * 115.54975 * 154.41442 * 21 2 1 39 39 H 1.09002 * 117.49978 * 359.97438 * 22 21 2 40 40 H 1.09005 * 117.49969 * 145.02147 * 22 21 2 41 41 H 1.08998 * 117.49960 * 214.97590 * 23 21 2 42 42 H 1.09005 * 117.50092 * 359.97108 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4444 2.4211 -0.1530 5 8 0.2521 2.4136 -0.3926 6 7 2.0991 3.5925 -0.0278 7 6 1.3758 4.8565 -0.1861 8 6 2.3457 6.0256 -0.0032 9 6 1.5902 7.3458 -0.1679 10 1 1.0770 7.3532 -1.1295 11 6 2.5802 8.5108 -0.1091 12 7 0.6084 7.4844 0.9106 13 6 -0.5018 8.2653 0.7295 14 1 -0.6535 8.7793 -0.2081 15 6 -1.4324 8.3962 1.7513 16 7 -2.4998 9.1463 1.5770 17 14 -1.1698 7.5077 3.3733 18 1 -0.4017 8.3805 4.2972 19 1 -2.4863 7.1831 3.9787 20 1 -0.4125 6.2530 3.1335 21 6 2.2605 -1.3051 0.0006 22 6 1.4521 -2.5876 -0.2052 23 6 2.0245 -2.2565 1.1752 24 1 -0.3633 0.0979 -1.0229 25 1 -0.3633 -0.9348 0.4268 26 1 -0.3633 0.8371 0.5962 27 1 3.2461 1.1552 0.1123 28 1 3.0501 3.5985 0.1636 29 1 0.9366 4.9014 -1.1826 30 1 0.5858 4.9193 0.5624 31 1 2.7851 5.9807 0.9934 32 1 3.1357 5.9628 -0.7516 33 1 3.0934 8.5033 0.8526 34 1 3.3107 8.4077 -0.9115 35 1 2.0420 9.4513 -0.2269 36 1 0.7447 7.0230 1.7528 37 1 -3.1498 9.2381 2.2912 38 1 3.2637 -1.2689 -0.4241 39 1 0.3751 -2.4875 -0.3407 40 1 1.9236 -3.3954 -0.7650 41 1 2.8724 -2.8466 1.5231 42 1 1.3246 -1.9383 1.9479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317391162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:47 Heat of formation + Delta-G solvation = -16.010348 kcal Electronic energy + Delta-G solvation = -19768.138975 eV Core-core repulsion = 16748.459697 eV Total energy + Delta-G solvation = -3019.679278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92456 -38.93856 -38.22281 -35.91229 -34.20504 -34.10220 -31.70835 -30.06980 -28.44851 -25.81979 -25.11607 -23.55173 -23.20484 -21.90344 -21.29735 -19.77264 -19.39311 -17.91745 -17.24686 -17.03910 -16.40761 -16.27699 -15.81803 -15.54110 -15.25104 -14.71809 -14.56645 -14.38713 -13.96277 -13.86810 -13.68626 -13.52544 -12.91651 -12.90168 -12.61848 -12.47946 -12.29950 -12.24047 -12.21972 -12.02805 -11.85248 -11.78971 -11.59556 -11.33075 -11.01031 -10.61199 -10.19235 -9.72971 -9.30168 -8.02420 -5.33924 0.33589 1.34003 1.38238 1.44386 2.25917 2.28662 2.47210 3.01371 3.29813 3.57755 3.62185 3.86566 3.96039 3.97281 4.11226 4.12208 4.19543 4.27601 4.32827 4.64136 4.65144 4.72528 4.74989 4.81225 4.83976 4.99348 5.00388 5.07231 5.09857 5.14824 5.16787 5.25636 5.35767 5.47434 5.54012 5.56101 5.58731 5.79530 6.22596 6.66248 7.09432 7.33768 7.86807 8.04146 9.19810 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022557 B = 0.003742 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.983932 B = 7481.368284 C = 8214.875341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.000 4.000 3 C -0.232 4.232 4 C 0.528 3.472 5 O -0.587 6.587 6 N -0.712 5.712 7 C 0.129 3.871 8 C -0.118 4.118 9 C 0.168 3.832 10 H 0.041 0.959 11 C -0.154 4.154 12 N -0.751 5.751 13 C -0.221 4.221 14 H 0.056 0.944 15 C -0.068 4.068 16 N -0.987 5.987 17 Si 0.952 3.048 18 H -0.274 1.274 19 H -0.300 1.300 20 H -0.258 1.258 21 C -0.140 4.140 22 C -0.171 4.171 23 C -0.161 4.161 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.161 0.839 28 H 0.417 0.583 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.363 0.637 37 H 0.256 0.744 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.174 -23.599 -2.412 29.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.002 4.002 3 C -0.252 4.252 4 C 0.319 3.681 5 O -0.470 6.470 6 N -0.364 5.364 7 C 0.004 3.996 8 C -0.156 4.156 9 C 0.060 3.940 10 H 0.059 0.941 11 C -0.214 4.214 12 N -0.395 5.395 13 C -0.353 4.353 14 H 0.074 0.926 15 C -0.259 4.259 16 N -0.638 5.638 17 Si 0.780 3.220 18 H -0.200 1.200 19 H -0.228 1.228 20 H -0.183 1.183 21 C -0.158 4.158 22 C -0.208 4.208 23 C -0.198 4.198 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.179 0.821 28 H 0.254 0.746 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.197 0.803 37 H 0.065 0.935 38 H 0.152 0.848 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.221 -23.437 -2.699 29.209 hybrid contribution -0.432 0.318 1.023 1.155 sum 16.789 -23.120 -1.676 28.622 Atomic orbital electron populations 1.21081 0.92324 1.02099 1.02597 1.21999 0.95453 0.93827 0.88935 1.22364 1.01570 0.90020 1.11266 1.19230 0.86703 0.85669 0.76467 1.90781 1.17318 1.88321 1.50590 1.45803 1.13553 1.04886 1.72186 1.21124 0.95158 0.82963 1.00328 1.21956 0.97761 0.91633 1.04230 1.20434 0.89172 0.93631 0.90806 0.94127 1.22243 0.98879 0.98355 1.01916 1.42859 1.23849 1.57700 1.15114 1.19040 0.97610 1.19420 0.99187 0.92557 1.25463 0.96869 1.01502 1.02026 1.69883 1.13822 1.45652 1.34459 0.85442 0.76705 0.79260 0.80551 1.19999 1.22757 1.18319 1.21331 1.00758 0.87505 1.06231 1.23183 1.00322 0.97372 0.99926 1.23083 1.04126 1.01247 0.91350 0.91432 0.90740 0.92103 0.82147 0.74568 0.93358 0.94539 0.90081 0.87332 0.92633 0.90363 0.95240 0.80345 0.93521 0.84753 0.88620 0.86518 0.86320 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 7.91 71.23 0.56 -2.43 16 2 C 0.00 0.00 5.81 -17.62 -0.10 -0.11 16 3 C -0.23 -4.71 9.67 23.43 0.23 -4.48 16 4 C 0.53 15.33 7.61 86.57 0.66 15.99 16 5 O -0.59 -22.75 13.28 -4.08 -0.05 -22.81 16 6 N -0.71 -17.69 5.55 -466.72 -2.59 -20.28 16 7 C 0.13 4.07 5.56 86.38 0.48 4.55 16 8 C -0.12 -3.06 4.87 30.60 0.15 -2.91 16 9 C 0.17 6.00 2.89 44.99 0.13 6.13 16 10 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 11 C -0.15 -4.84 9.49 71.98 0.68 -4.16 16 12 N -0.75 -34.94 4.38 -322.95 -1.41 -36.35 16 13 C -0.22 -12.86 10.41 84.04 0.87 -11.99 16 14 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 15 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 16 N -0.99 -65.38 13.97 21.65 0.30 -65.08 16 17 Si 0.95 47.53 27.74 68.60 1.90 49.43 16 18 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 20 H -0.26 -11.89 6.52 99.48 0.65 -11.24 16 21 C -0.14 -1.81 6.00 -11.54 -0.07 -1.88 16 22 C -0.17 -1.87 9.77 30.62 0.30 -1.57 16 23 C -0.16 -1.72 10.10 30.62 0.31 -1.41 16 24 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 25 H 0.07 1.41 6.31 -2.39 -0.02 1.39 16 26 H 0.06 1.88 6.12 -2.39 -0.01 1.86 16 27 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 28 H 0.42 6.71 8.46 -92.71 -0.78 5.93 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.04 1.46 7.75 -2.38 -0.02 1.45 16 31 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.36 16.39 5.66 -92.71 -0.52 15.87 16 37 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 38 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 1.18 6.42 -2.39 -0.02 1.16 16 40 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -77.65 343.92 2.46 -75.19 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.36 Total: 27.78 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.67 Total: -7.90 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -3.70 Total: -121.70 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.90 Total: 49.43 kcal Total: -77.65 2.46 -75.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317391162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.183 kcal (2) G-P(sol) polarization free energy of solvation -77.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds