Wall clock time and date at job start Mon Mar 30 2020 19:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 N 1.46499 * 109.46840 * 294.99527 * 4 2 1 6 6 C 1.36936 * 120.00002 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00140 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00367 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99972 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00444 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46864 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47259 * 119.99588 * 10 8 6 13 13 H 1.48495 * 109.47205 * 239.99955 * 10 8 6 14 14 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 15 15 N 1.46506 * 109.46916 * 64.99869 * 14 2 1 16 16 C 1.34770 * 119.99883 * 179.97438 * 15 14 2 17 17 O 1.21279 * 120.00491 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99930 * 180.02562 * 16 15 14 19 19 C 1.53002 * 115.55022 * 179.91368 * 18 16 15 20 20 C 1.53001 * 117.49945 * 34.33454 * 19 18 16 21 21 C 1.52996 * 117.50278 * 325.67554 * 19 18 16 22 22 C 1.53006 * 117.49931 * 34.21477 * 18 16 15 23 23 C 1.52996 * 117.50149 * 325.58914 * 18 16 15 24 24 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 26 26 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 27 27 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 28 28 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 29 29 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 30 30 H 0.96996 * 120.00586 * 180.02562 * 9 8 6 31 31 H 1.08993 * 109.47416 * 185.00006 * 14 2 1 32 32 H 1.09001 * 109.46966 * 305.00739 * 14 2 1 33 33 H 0.96999 * 119.99735 * 0.02562 * 15 14 2 34 34 H 1.09007 * 115.54995 * 180.02562 * 19 18 16 35 35 H 1.09000 * 117.49552 * 0.02562 * 20 19 18 36 36 H 1.09001 * 117.50007 * 145.01799 * 20 19 18 37 37 H 1.08998 * 117.50268 * 214.97670 * 21 19 18 38 38 H 1.09007 * 117.49912 * 359.97438 * 21 19 18 39 39 H 1.09005 * 117.49584 * 359.97438 * 22 18 16 40 40 H 1.08997 * 117.50191 * 145.01594 * 22 18 16 41 41 H 1.09000 * 117.50209 * 214.97256 * 23 18 16 42 42 H 1.08997 * 117.49635 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4423 6 6 2.0019 -0.4201 3.6855 7 1 2.5636 -1.3371 3.7864 8 6 1.6343 0.2965 4.8160 9 7 0.9503 1.4142 4.6931 10 14 2.1116 -0.3246 6.5119 11 1 2.8723 -1.5929 6.3784 12 1 2.9561 0.6905 7.1912 13 1 0.8854 -0.5654 7.3141 14 6 2.0401 -0.7214 -1.2492 15 7 1.6524 0.0352 -2.4424 16 6 1.9964 -0.4133 -3.6659 17 8 2.6264 -1.4434 -3.7792 18 6 1.5982 0.3652 -4.8932 19 6 2.0430 -0.2350 -6.2285 20 6 2.0789 -1.7604 -6.3404 21 6 3.3858 -0.9675 -6.2614 22 6 1.5616 1.8907 -4.7812 23 6 0.2555 1.0978 -4.8603 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2057 29 1 1.1483 0.8592 2.3517 30 1 0.6937 1.9153 5.4830 31 1 3.1263 -0.7996 -1.2056 32 1 1.6053 -1.7199 -1.2951 33 1 1.1489 0.8593 -2.3518 34 1 1.7554 0.3284 -7.1162 35 1 1.7851 -2.3365 -5.4629 36 1 1.8148 -2.2009 -7.3018 37 1 3.9811 -0.8867 -7.1709 38 1 3.9526 -1.0216 -5.3319 39 1 1.8252 2.3312 -3.8195 40 1 1.8545 2.4670 -5.6587 41 1 -0.3109 1.1526 -5.7900 42 1 -0.3401 1.0163 -3.9511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319202108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:52 Heat of formation + Delta-G solvation = 17.002775 kcal Electronic energy + Delta-G solvation = -20147.127886 eV Core-core repulsion = 17128.880165 eV Total energy + Delta-G solvation = -3018.247722 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63876 -37.71416 -36.65156 -35.75122 -34.11053 -32.31685 -30.02565 -26.75540 -25.64225 -24.57245 -22.98541 -22.75405 -22.14854 -21.58787 -20.34509 -19.27965 -17.23507 -16.78120 -16.40826 -15.50587 -15.40656 -14.97920 -14.47682 -14.27595 -13.90565 -13.61995 -13.37184 -13.00976 -12.70819 -12.51617 -12.36202 -12.08063 -12.00301 -11.62469 -11.31200 -11.08615 -11.06916 -10.92100 -10.72044 -10.58164 -10.42993 -10.27683 -10.02796 -9.73383 -9.63924 -9.55557 -9.02109 -8.89313 -6.93520 -5.78341 -3.06737 2.35122 3.09174 3.42869 3.43834 3.48905 3.50947 3.98668 4.15042 4.27991 4.58344 4.64984 4.73656 4.95090 5.05442 5.07681 5.14690 5.20060 5.26134 5.35609 5.52266 5.56742 5.56799 5.68195 5.70263 5.78985 5.82051 5.94174 5.96365 6.06931 6.17692 6.24478 6.31306 6.37405 6.49073 6.63055 6.75333 6.84831 7.46377 7.70061 8.18786 8.40805 9.52196 10.09283 10.44088 11.44754 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042595 B = 0.003187 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.193554 B = 8784.220910 C = 9163.847367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.128 3.872 15 N -0.724 5.724 16 C 0.545 3.455 17 O -0.532 6.532 18 C -0.125 4.125 19 C -0.117 4.117 20 C -0.168 4.168 21 C -0.168 4.168 22 C -0.156 4.156 23 C -0.156 4.156 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.384 0.616 30 H 0.254 0.746 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 0.364 -22.774 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.033 3.967 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.004 3.996 15 N -0.375 5.375 16 C 0.332 3.668 17 O -0.410 6.410 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.204 4.204 21 C -0.204 4.204 22 C -0.193 4.193 23 C -0.193 4.193 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.218 0.782 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.407 -0.506 -22.692 22.701 hybrid contribution -0.204 0.451 1.008 1.123 sum -0.610 -0.055 -21.684 21.692 Atomic orbital electron populations 1.21791 0.94673 1.01960 1.01429 1.21554 0.96703 1.00476 0.94226 0.90590 1.20572 0.96614 0.94202 0.85358 1.42345 1.66909 1.27694 1.00602 1.19289 1.28540 1.05466 0.83643 0.91093 1.24737 1.01023 0.97418 0.97878 1.69662 1.43637 1.16640 1.28390 0.86106 0.77601 0.77849 0.84597 1.20525 1.21869 1.21874 1.21422 1.00148 0.95244 0.82779 1.46049 1.57699 1.27894 1.05893 1.19419 0.79058 0.84980 0.83362 1.90646 1.39861 1.24260 1.86205 1.20986 1.03429 0.94355 0.94030 1.21369 1.02940 0.95099 0.94182 1.23049 1.01664 0.92764 1.02968 1.23049 0.90545 1.03474 1.03381 1.23117 1.00752 0.91108 1.04330 1.23109 0.89835 1.01944 1.04414 0.92781 0.91110 0.94030 0.95990 0.96125 0.78219 0.93575 0.91319 0.91305 0.76675 0.87431 0.87354 0.89675 0.89664 0.87356 0.87953 0.87547 0.87565 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.68 2.46 -90.62 -0.22 -1.91 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 5 N -0.73 -18.26 5.33 -59.91 -0.32 -18.58 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 10 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 C 0.13 1.75 5.07 -4.04 -0.02 1.73 16 15 N -0.72 -8.45 5.08 -60.29 -0.31 -8.76 16 16 C 0.55 6.92 7.24 -10.99 -0.08 6.84 16 17 O -0.53 -8.35 11.83 5.56 0.07 -8.29 16 18 C -0.12 -1.22 2.47 -155.66 -0.38 -1.60 16 19 C -0.12 -1.14 5.85 -90.62 -0.53 -1.67 16 20 C -0.17 -1.81 9.66 -26.70 -0.26 -2.07 16 21 C -0.17 -1.82 9.66 -26.70 -0.26 -2.08 16 22 C -0.16 -1.16 9.60 -26.73 -0.26 -1.41 16 23 C -0.16 -1.15 9.59 -26.73 -0.26 -1.40 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 26 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.38 9.95 6.85 -40.82 -0.28 9.67 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.86 5.84 -40.82 -0.24 3.62 16 34 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 1.42 6.28 -51.93 -0.33 1.10 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.11 1.43 6.28 -51.93 -0.33 1.10 16 39 H 0.10 0.74 7.54 -51.93 -0.39 0.34 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.72 7.55 -51.93 -0.39 0.33 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -31.52 338.25 -8.86 -40.38 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.90 Total: 9.57 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -2.20 Total: -9.49 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.10 Total: -54.68 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.07 Total: -8.29 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.52 -8.86 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319202108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.386 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds