Wall clock time and date at job start Mon Mar 30 2020 19:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 N 1.46499 * 109.46840 * 294.99527 * 4 2 1 6 6 C 1.36936 * 120.00002 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00140 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00367 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99972 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00444 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46864 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47259 * 119.99588 * 10 8 6 13 13 H 1.48495 * 109.47205 * 239.99955 * 10 8 6 14 14 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 15 15 N 1.46506 * 109.46916 * 64.99869 * 14 2 1 16 16 C 1.34770 * 119.99883 * 179.97438 * 15 14 2 17 17 O 1.21279 * 120.00491 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99930 * 180.02562 * 16 15 14 19 19 C 1.53002 * 115.55022 * 179.91368 * 18 16 15 20 20 C 1.53001 * 117.49945 * 34.33454 * 19 18 16 21 21 C 1.52996 * 117.50278 * 325.67554 * 19 18 16 22 22 C 1.53006 * 117.49931 * 34.21477 * 18 16 15 23 23 C 1.52996 * 117.50149 * 325.58914 * 18 16 15 24 24 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 26 26 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 27 27 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 28 28 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 29 29 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 30 30 H 0.96996 * 120.00586 * 180.02562 * 9 8 6 31 31 H 1.08993 * 109.47416 * 185.00006 * 14 2 1 32 32 H 1.09001 * 109.46966 * 305.00739 * 14 2 1 33 33 H 0.96999 * 119.99735 * 0.02562 * 15 14 2 34 34 H 1.09007 * 115.54995 * 180.02562 * 19 18 16 35 35 H 1.09000 * 117.49552 * 0.02562 * 20 19 18 36 36 H 1.09001 * 117.50007 * 145.01799 * 20 19 18 37 37 H 1.08998 * 117.50268 * 214.97670 * 21 19 18 38 38 H 1.09007 * 117.49912 * 359.97438 * 21 19 18 39 39 H 1.09005 * 117.49584 * 359.97438 * 22 18 16 40 40 H 1.08997 * 117.50191 * 145.01594 * 22 18 16 41 41 H 1.09000 * 117.50209 * 214.97256 * 23 18 16 42 42 H 1.08997 * 117.49635 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4423 6 6 2.0019 -0.4201 3.6855 7 1 2.5636 -1.3371 3.7864 8 6 1.6343 0.2965 4.8160 9 7 0.9503 1.4142 4.6931 10 14 2.1116 -0.3246 6.5119 11 1 2.8723 -1.5929 6.3784 12 1 2.9561 0.6905 7.1912 13 1 0.8854 -0.5654 7.3141 14 6 2.0401 -0.7214 -1.2492 15 7 1.6524 0.0352 -2.4424 16 6 1.9964 -0.4133 -3.6659 17 8 2.6264 -1.4434 -3.7792 18 6 1.5982 0.3652 -4.8932 19 6 2.0430 -0.2350 -6.2285 20 6 2.0789 -1.7604 -6.3404 21 6 3.3858 -0.9675 -6.2614 22 6 1.5616 1.8907 -4.7812 23 6 0.2555 1.0978 -4.8603 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2057 29 1 1.1483 0.8592 2.3517 30 1 0.6937 1.9153 5.4830 31 1 3.1263 -0.7996 -1.2056 32 1 1.6053 -1.7199 -1.2951 33 1 1.1489 0.8593 -2.3518 34 1 1.7554 0.3284 -7.1162 35 1 1.7851 -2.3365 -5.4629 36 1 1.8148 -2.2009 -7.3018 37 1 3.9811 -0.8867 -7.1709 38 1 3.9526 -1.0216 -5.3319 39 1 1.8252 2.3312 -3.8195 40 1 1.8545 2.4670 -5.6587 41 1 -0.3109 1.1526 -5.7900 42 1 -0.3401 1.0163 -3.9511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319202108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:51 Heat of formation + Delta-G solvation = -2.490940 kcal Electronic energy + Delta-G solvation = -20147.973197 eV Core-core repulsion = 17128.880165 eV Total energy + Delta-G solvation = -3019.093033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53343 -38.77701 -37.80215 -36.70681 -35.62160 -33.86494 -31.83582 -27.92493 -27.28081 -25.59623 -24.38234 -23.61183 -22.88847 -22.65470 -21.57216 -20.41483 -19.12126 -17.72560 -17.43675 -16.66473 -16.51354 -16.31282 -15.73200 -15.51501 -15.40349 -14.99471 -14.55691 -14.19767 -14.08568 -13.67730 -13.59761 -13.29459 -12.97314 -12.84331 -12.57810 -12.34361 -12.25222 -12.14185 -12.12140 -11.96221 -11.74184 -11.71207 -11.66830 -11.07075 -10.96783 -10.54038 -10.36462 -10.07561 -9.00851 -7.96781 -5.25147 1.47195 1.47411 1.47588 1.57951 2.11641 2.55800 2.68706 3.29147 3.37067 3.46737 3.55835 3.69267 3.92882 3.95617 4.00460 4.06141 4.24401 4.33637 4.37806 4.38604 4.51727 4.68032 4.74264 4.74891 4.87317 4.88061 4.91185 5.01479 5.01655 5.05897 5.10528 5.19472 5.28773 5.35690 5.42580 5.44422 5.49036 5.49546 6.26155 6.53261 7.23986 7.33016 8.07530 8.32268 9.26843 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042595 B = 0.003187 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.193554 B = 8784.220910 C = 9163.847367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.078 0.922 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.141 3.859 15 N -0.715 5.715 16 C 0.539 3.461 17 O -0.569 6.569 18 C -0.150 4.150 19 C -0.102 4.102 20 C -0.177 4.177 21 C -0.179 4.179 22 C -0.143 4.143 23 C -0.140 4.140 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.377 0.623 30 H 0.252 0.748 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 1.164 -24.321 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.097 0.903 4 C 0.030 3.970 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.016 3.984 15 N -0.367 5.367 16 C 0.327 3.673 17 O -0.449 6.449 18 C -0.154 4.154 19 C -0.120 4.120 20 C -0.214 4.214 21 C -0.216 4.216 22 C -0.180 4.180 23 C -0.177 4.177 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.210 0.790 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.247 0.753 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.965 0.290 -24.263 24.284 hybrid contribution -0.005 0.162 1.444 1.453 sum -0.970 0.452 -22.819 22.844 Atomic orbital electron populations 1.21722 0.93803 1.01922 1.01767 1.21325 0.97210 0.99998 0.92711 0.90349 1.20715 0.96466 0.94126 0.85702 1.42504 1.66780 1.27833 1.01316 1.19659 1.27825 1.05343 0.85069 0.90926 1.25535 1.01649 0.97891 1.01484 1.69802 1.45050 1.17851 1.29087 0.85086 0.77128 0.77607 0.80016 1.19288 1.21910 1.21901 1.21099 0.99359 0.94970 0.82961 1.45893 1.57684 1.28077 1.05090 1.20032 0.78270 0.84745 0.84241 1.90641 1.41486 1.26036 1.86760 1.20971 1.06273 0.95678 0.92449 1.21540 1.01115 0.94252 0.95127 1.22984 1.01973 0.93853 1.02597 1.22982 0.91015 1.04833 1.02721 1.23259 1.00291 0.89089 1.05329 1.23260 0.89157 0.99714 1.05608 0.93018 0.93759 0.90604 0.96161 0.96368 0.79037 0.93913 0.92370 0.91981 0.75253 0.84648 0.90264 0.87868 0.87899 0.90351 0.87730 0.85743 0.85696 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 8.94 71.98 0.64 -3.15 16 2 C -0.09 -2.79 2.46 -10.79 -0.03 -2.82 16 3 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 4 C 0.16 6.25 5.65 86.38 0.49 6.73 16 5 N -0.74 -37.39 5.33 -343.45 -1.83 -39.22 16 6 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 7 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 8 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 9 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 10 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 14 C 0.14 3.80 5.07 86.38 0.44 4.23 16 15 N -0.72 -15.82 5.08 -463.06 -2.35 -18.17 16 16 C 0.54 13.32 7.24 87.66 0.63 13.95 16 17 O -0.57 -18.34 11.83 -3.03 -0.04 -18.37 16 18 C -0.15 -2.62 2.47 -52.93 -0.13 -2.75 16 19 C -0.10 -1.77 5.85 -10.79 -0.06 -1.83 16 20 C -0.18 -3.73 9.66 30.62 0.30 -3.43 16 21 C -0.18 -3.79 9.66 30.62 0.30 -3.49 16 22 C -0.14 -1.63 9.60 30.60 0.29 -1.34 16 23 C -0.14 -1.57 9.59 30.59 0.29 -1.27 16 24 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.50 7.18 -2.39 -0.02 1.48 16 26 H 0.08 1.59 7.18 -2.38 -0.02 1.58 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.38 19.84 6.85 -92.71 -0.63 19.21 16 30 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.41 7.00 5.84 -92.71 -0.54 6.46 16 34 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 2.15 6.28 -2.39 -0.01 2.14 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 2.15 6.28 -2.38 -0.01 2.14 16 39 H 0.10 1.17 7.54 -2.38 -0.02 1.15 16 40 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.11 1.12 7.55 -2.39 -0.02 1.10 16 Total: -1.00 -68.96 338.25 2.40 -66.56 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.16 Total: 31.29 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 4.47 Total: -11.97 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.90 Total: -115.78 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.04 Total: -18.37 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -68.96 2.40 -66.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319202108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.071 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds