Wall clock time and date at job start Mon Mar 30 2020 19:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46502 * 109.47005 * 64.99872 * 4 2 1 6 6 C 1.36940 * 120.00284 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99632 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00388 * 180.02562 * 6 5 4 9 9 N 1.31626 * 119.99842 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00232 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47254 * 59.99875 * 10 8 6 12 12 H 1.48498 * 109.47332 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46982 * 300.00062 * 10 8 6 14 14 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 15 15 N 1.46501 * 109.47135 * 295.00335 * 14 2 1 16 16 C 1.34783 * 119.99675 * 179.97438 * 15 14 2 17 17 O 1.21278 * 120.00464 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99677 * 180.02562 * 16 15 14 19 19 C 1.52996 * 115.54842 * 180.02562 * 18 16 15 20 20 C 1.53001 * 117.50150 * 34.32732 * 19 18 16 21 21 C 1.52994 * 117.49995 * 325.66679 * 19 18 16 22 22 C 1.53001 * 117.49917 * 34.32702 * 18 16 15 23 23 C 1.53003 * 117.49729 * 325.66675 * 18 16 15 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 28 28 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 29 29 H 0.96995 * 120.00463 * 0.02562 * 5 4 2 30 30 H 0.96996 * 119.99845 * 179.97438 * 9 8 6 31 31 H 1.09006 * 109.47194 * 55.00274 * 14 2 1 32 32 H 1.08997 * 109.47756 * 174.99755 * 14 2 1 33 33 H 0.96997 * 120.00359 * 0.02562 * 15 14 2 34 34 H 1.09005 * 115.54755 * 179.97438 * 19 18 16 35 35 H 1.08999 * 117.49519 * 359.97438 * 20 19 18 36 36 H 1.09003 * 117.49790 * 145.01909 * 20 19 18 37 37 H 1.09005 * 117.49910 * 214.98234 * 21 19 18 38 38 H 1.09004 * 117.50099 * 359.97438 * 21 19 18 39 39 H 1.09001 * 117.50253 * 0.02562 * 22 18 16 40 40 H 1.08999 * 117.49634 * 145.02573 * 22 18 16 41 41 H 1.09002 * 117.49791 * 214.98383 * 23 18 16 42 42 H 1.09005 * 117.49592 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5622 -1.3381 -3.7864 8 6 1.6344 0.2963 -4.8161 9 7 0.9510 1.4145 -4.6931 10 14 2.1106 -0.3256 -6.5119 11 1 1.5172 -1.6691 -6.7311 12 1 1.6031 0.6136 -7.5441 13 1 3.5897 -0.4160 -6.6086 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6660 17 8 2.6249 -1.4440 3.7794 18 6 1.5964 0.3645 4.8934 19 6 2.0390 -0.2368 6.2287 20 6 3.3813 -0.9704 6.2629 21 6 2.0736 -1.7623 6.3397 22 6 0.2544 1.0986 4.8590 23 6 1.5624 1.8902 4.7826 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7994 -1.2055 28 1 1.6054 -1.7198 -1.2951 29 1 1.1489 0.8594 -2.3518 30 1 0.6951 1.9158 -5.4831 31 1 1.6054 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2057 33 1 1.1482 0.8591 2.3518 34 1 1.7506 0.3262 7.1165 35 1 3.9488 -1.0249 5.3339 36 1 3.9755 -0.8905 7.1733 37 1 1.8080 -2.2032 7.3005 38 1 1.7806 -2.3376 5.4614 39 1 -0.3400 1.0185 3.9488 40 1 -0.3133 1.1532 5.7879 41 1 1.8546 2.4652 5.6613 42 1 1.8292 2.3311 3.8221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319202109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:56 Heat of formation + Delta-G solvation = 17.161233 kcal Electronic energy + Delta-G solvation = -20146.970885 eV Core-core repulsion = 17128.730034 eV Total energy + Delta-G solvation = -3018.240851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.63659 -37.71241 -36.64931 -35.74798 -34.10695 -32.31401 -30.02267 -26.75358 -25.63884 -24.56934 -22.98736 -22.74993 -22.14816 -21.58601 -20.34320 -19.27801 -17.23219 -16.77859 -16.40658 -15.50484 -15.40544 -14.97594 -14.47710 -14.27535 -13.90676 -13.60796 -13.37271 -13.01618 -12.70223 -12.51552 -12.36088 -12.07347 -12.00341 -11.62523 -11.31130 -11.08369 -11.06645 -10.89898 -10.70866 -10.58272 -10.43542 -10.27875 -10.07999 -9.72425 -9.63934 -9.55348 -9.01968 -8.88005 -6.93358 -5.77816 -3.06311 2.35175 3.09247 3.43829 3.44212 3.48420 3.49536 3.98533 4.15171 4.28077 4.58650 4.64906 4.73742 4.95143 5.05594 5.07768 5.14735 5.20188 5.26230 5.35770 5.52349 5.56823 5.56969 5.68195 5.70292 5.79112 5.82074 5.94355 5.96516 6.07139 6.17863 6.24634 6.31377 6.37628 6.49233 6.63244 6.75571 6.85058 7.46449 7.69323 8.18844 8.41440 9.52583 10.09684 10.44523 11.45161 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042606 B = 0.003187 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.027139 B = 8784.508122 C = 9164.045094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.128 3.872 15 N -0.724 5.724 16 C 0.545 3.455 17 O -0.532 6.532 18 C -0.125 4.125 19 C -0.117 4.117 20 C -0.168 4.168 21 C -0.168 4.168 22 C -0.156 4.156 23 C -0.156 4.156 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.384 0.616 30 H 0.256 0.744 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 0.412 22.725 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.004 3.996 15 N -0.375 5.375 16 C 0.332 3.668 17 O -0.410 6.410 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.205 4.205 21 C -0.205 4.205 22 C -0.193 4.193 23 C -0.193 4.193 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.446 -0.443 22.636 22.645 hybrid contribution -0.189 0.427 -1.002 1.105 sum -0.635 -0.016 21.634 21.643 Atomic orbital electron populations 1.21790 0.94675 1.01956 1.01428 1.21551 0.96702 1.00477 0.94225 0.90591 1.20568 0.96606 0.94205 0.85360 1.42328 1.66974 1.27655 1.00569 1.19200 1.28781 1.05452 0.83675 0.91201 1.24734 1.00995 0.97388 0.97865 1.69647 1.43545 1.16557 1.28630 0.86249 0.78035 0.77710 0.84093 1.21257 1.21688 1.21251 1.21421 1.00149 0.95241 0.82783 1.46051 1.57685 1.27912 1.05889 1.19424 0.79057 0.84978 0.83362 1.90645 1.39896 1.24221 1.86205 1.20988 1.03438 0.94344 0.94025 1.21368 1.02956 0.95083 0.94183 1.23052 0.90550 1.03473 1.03377 1.23050 1.01658 0.92770 1.02974 1.23121 0.89826 1.01940 1.04411 1.23128 1.00733 0.91118 1.04336 0.92784 0.91103 0.94038 0.96138 0.95998 0.78216 0.93470 0.91309 0.91320 0.76674 0.87430 0.87350 0.89659 0.89677 0.87355 0.87980 0.87564 0.87551 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.69 2.46 -90.63 -0.22 -1.91 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.19 5.65 -4.04 -0.02 3.16 16 5 N -0.73 -18.28 5.33 -59.91 -0.32 -18.60 16 6 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.94 -28.10 13.06 55.49 0.72 -27.38 16 10 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 15 N -0.72 -8.46 5.08 -60.29 -0.31 -8.76 16 16 C 0.55 6.92 7.24 -10.98 -0.08 6.84 16 17 O -0.53 -8.36 11.83 5.56 0.07 -8.29 16 18 C -0.12 -1.22 2.46 -155.66 -0.38 -1.60 16 19 C -0.12 -1.14 5.84 -90.62 -0.53 -1.67 16 20 C -0.17 -1.82 9.66 -26.69 -0.26 -2.08 16 21 C -0.17 -1.81 9.66 -26.70 -0.26 -2.07 16 22 C -0.16 -1.15 9.60 -26.69 -0.26 -1.40 16 23 C -0.16 -1.16 9.60 -26.69 -0.26 -1.42 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 26 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.38 9.96 6.85 -40.82 -0.28 9.68 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.40 3.86 5.84 -40.82 -0.24 3.62 16 34 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 1.43 6.28 -51.93 -0.33 1.11 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.11 1.42 6.28 -51.93 -0.33 1.10 16 39 H 0.10 0.72 7.55 -51.93 -0.39 0.33 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.74 7.55 -51.93 -0.39 0.34 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -31.50 338.26 -8.86 -40.36 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.90 Total: 9.67 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.20 Total: -9.52 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.10 Total: -54.74 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.07 Total: -8.29 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.50 -8.86 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319202109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.524 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds