Wall clock time and date at job start Mon Mar 30 2020 19:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46502 * 109.47005 * 64.99872 * 4 2 1 6 6 C 1.36940 * 120.00284 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99632 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00388 * 180.02562 * 6 5 4 9 9 N 1.31626 * 119.99842 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00232 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47254 * 59.99875 * 10 8 6 12 12 H 1.48498 * 109.47332 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46982 * 300.00062 * 10 8 6 14 14 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 15 15 N 1.46501 * 109.47135 * 295.00335 * 14 2 1 16 16 C 1.34783 * 119.99675 * 179.97438 * 15 14 2 17 17 O 1.21278 * 120.00464 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99677 * 180.02562 * 16 15 14 19 19 C 1.52996 * 115.54842 * 180.02562 * 18 16 15 20 20 C 1.53001 * 117.50150 * 34.32732 * 19 18 16 21 21 C 1.52994 * 117.49995 * 325.66679 * 19 18 16 22 22 C 1.53001 * 117.49917 * 34.32702 * 18 16 15 23 23 C 1.53003 * 117.49729 * 325.66675 * 18 16 15 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 28 28 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 29 29 H 0.96995 * 120.00463 * 0.02562 * 5 4 2 30 30 H 0.96996 * 119.99845 * 179.97438 * 9 8 6 31 31 H 1.09006 * 109.47194 * 55.00274 * 14 2 1 32 32 H 1.08997 * 109.47756 * 174.99755 * 14 2 1 33 33 H 0.96997 * 120.00359 * 0.02562 * 15 14 2 34 34 H 1.09005 * 115.54755 * 179.97438 * 19 18 16 35 35 H 1.08999 * 117.49519 * 359.97438 * 20 19 18 36 36 H 1.09003 * 117.49790 * 145.01909 * 20 19 18 37 37 H 1.09005 * 117.49910 * 214.98234 * 21 19 18 38 38 H 1.09004 * 117.50099 * 359.97438 * 21 19 18 39 39 H 1.09001 * 117.50253 * 0.02562 * 22 18 16 40 40 H 1.08999 * 117.49634 * 145.02573 * 22 18 16 41 41 H 1.09002 * 117.49791 * 214.98383 * 23 18 16 42 42 H 1.09005 * 117.49592 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5622 -1.3381 -3.7864 8 6 1.6344 0.2963 -4.8161 9 7 0.9510 1.4145 -4.6931 10 14 2.1106 -0.3256 -6.5119 11 1 1.5172 -1.6691 -6.7311 12 1 1.6031 0.6136 -7.5441 13 1 3.5897 -0.4160 -6.6086 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6660 17 8 2.6249 -1.4440 3.7794 18 6 1.5964 0.3645 4.8934 19 6 2.0390 -0.2368 6.2287 20 6 3.3813 -0.9704 6.2629 21 6 2.0736 -1.7623 6.3397 22 6 0.2544 1.0986 4.8590 23 6 1.5624 1.8902 4.7826 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7994 -1.2055 28 1 1.6054 -1.7198 -1.2951 29 1 1.1489 0.8594 -2.3518 30 1 0.6951 1.9158 -5.4831 31 1 1.6054 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2057 33 1 1.1482 0.8591 2.3518 34 1 1.7506 0.3262 7.1165 35 1 3.9488 -1.0249 5.3339 36 1 3.9755 -0.8905 7.1733 37 1 1.8080 -2.2032 7.3005 38 1 1.7806 -2.3376 5.4614 39 1 -0.3400 1.0185 3.9488 40 1 -0.3133 1.1532 5.7879 41 1 1.8546 2.4652 5.6613 42 1 1.8292 2.3311 3.8221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319202109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:29:55 Heat of formation + Delta-G solvation = -2.319353 kcal Electronic energy + Delta-G solvation = -20147.815627 eV Core-core repulsion = 17128.730034 eV Total energy + Delta-G solvation = -3019.085592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53234 -38.77652 -37.80079 -36.70405 -35.61893 -33.86384 -31.83429 -27.92493 -27.27778 -25.59352 -24.37916 -23.61384 -22.88923 -22.65457 -21.57187 -20.41444 -19.11776 -17.72453 -17.43558 -16.66381 -16.51399 -16.31187 -15.73430 -15.51176 -15.39439 -15.00059 -14.55780 -14.19576 -14.08474 -13.67437 -13.59467 -13.29479 -12.97280 -12.78735 -12.57844 -12.34424 -12.25005 -12.22044 -12.12329 -11.96093 -11.74386 -11.71415 -11.66539 -11.06976 -10.94661 -10.54021 -10.36533 -10.07557 -9.00787 -7.96390 -5.24891 1.47155 1.47189 1.49916 1.56072 2.11624 2.56154 2.68658 3.28977 3.37115 3.46793 3.55845 3.69314 3.92821 3.95623 4.00313 4.06130 4.24408 4.33830 4.37763 4.38639 4.51693 4.67987 4.74249 4.74937 4.87339 4.88009 4.91159 5.01480 5.01668 5.05862 5.10523 5.19442 5.28757 5.35672 5.42551 5.44429 5.48542 5.49545 6.26284 6.53225 7.23944 7.33155 8.07810 8.32585 9.26851 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042606 B = 0.003187 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.027139 B = 8784.508122 C = 9164.045094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.078 0.922 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.250 4.250 7 H 0.073 0.927 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.141 3.859 15 N -0.715 5.715 16 C 0.539 3.461 17 O -0.569 6.569 18 C -0.150 4.150 19 C -0.102 4.102 20 C -0.179 4.179 21 C -0.177 4.177 22 C -0.140 4.140 23 C -0.143 4.143 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.377 0.623 30 H 0.252 0.748 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.410 0.590 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.534 1.219 24.254 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.097 0.903 4 C 0.030 3.970 5 N -0.384 5.384 6 C -0.382 4.382 7 H 0.091 0.909 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.016 3.984 15 N -0.367 5.367 16 C 0.327 3.673 17 O -0.449 6.449 18 C -0.154 4.154 19 C -0.120 4.120 20 C -0.216 4.216 21 C -0.214 4.214 22 C -0.177 4.177 23 C -0.180 4.180 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.210 0.790 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.007 0.359 24.189 24.213 hybrid contribution 0.011 0.134 -1.431 1.437 sum -0.996 0.493 22.758 22.786 Atomic orbital electron populations 1.21720 0.93803 1.01918 1.01769 1.21323 0.97211 0.99999 0.92710 0.90350 1.20710 0.96451 0.94126 0.85709 1.42487 1.66854 1.27793 1.01285 1.19596 1.28109 1.05391 0.85110 0.90941 1.25539 1.01595 0.97848 1.01501 1.69794 1.44963 1.17770 1.29260 0.85221 0.77895 0.77195 0.79504 1.20481 1.21922 1.20486 1.21097 0.99358 0.94965 0.82965 1.45894 1.57673 1.28095 1.05086 1.20039 0.78269 0.84743 0.84241 1.90640 1.41519 1.25997 1.86759 1.20973 1.06282 0.95665 0.92442 1.21539 1.01131 0.94236 0.95128 1.22986 0.91015 1.04833 1.02721 1.22985 1.01968 0.93863 1.02599 1.23272 0.89152 0.99704 1.05606 1.23270 1.00279 0.89094 1.05335 0.93025 0.93752 0.90604 0.96390 0.96178 0.79040 0.93890 0.91988 0.92373 0.75252 0.84645 0.90347 0.87892 0.87870 0.90267 0.87561 0.85692 0.85745 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.94 71.98 0.64 -3.15 16 2 C -0.09 -2.80 2.46 -10.80 -0.03 -2.82 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 6.26 5.65 86.38 0.49 6.75 16 5 N -0.74 -37.45 5.33 -343.46 -1.83 -39.28 16 6 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 9 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 10 Si 0.97 46.22 29.55 68.60 2.03 48.24 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 C 0.14 3.80 5.06 86.38 0.44 4.24 16 15 N -0.72 -15.84 5.08 -463.05 -2.35 -18.19 16 16 C 0.54 13.33 7.24 87.66 0.63 13.97 16 17 O -0.57 -18.35 11.83 -3.02 -0.04 -18.39 16 18 C -0.15 -2.62 2.46 -52.93 -0.13 -2.75 16 19 C -0.10 -1.77 5.84 -10.80 -0.06 -1.83 16 20 C -0.18 -3.79 9.66 30.62 0.30 -3.49 16 21 C -0.18 -3.73 9.66 30.62 0.30 -3.44 16 22 C -0.14 -1.57 9.60 30.62 0.29 -1.27 16 23 C -0.14 -1.64 9.60 30.62 0.29 -1.34 16 24 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.50 7.18 -2.39 -0.02 1.48 16 26 H 0.08 1.60 7.18 -2.38 -0.02 1.58 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.38 19.87 6.85 -92.71 -0.64 19.24 16 30 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.41 7.01 5.84 -92.71 -0.54 6.47 16 34 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 2.15 6.28 -2.39 -0.01 2.14 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.08 2.15 6.28 -2.39 -0.01 2.14 16 39 H 0.11 1.12 7.55 -2.39 -0.02 1.10 16 40 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 1.17 7.55 -2.38 -0.02 1.16 16 Total: -1.00 -68.94 338.26 2.40 -66.55 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.16 Total: 31.63 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 4.47 Total: -12.11 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -3.90 Total: -115.92 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.04 Total: -18.39 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -68.94 2.40 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319202109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.229 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds