Wall clock time and date at job start Mon Mar 30 2020 19:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47290 * 2 1 4 4 C 1.53001 * 109.47177 * 240.00278 * 2 1 3 5 5 N 1.46505 * 109.47006 * 183.82506 * 4 2 1 6 6 C 1.36942 * 119.99919 * 186.20102 * 5 4 2 7 7 H 1.08002 * 120.00051 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99697 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99826 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00279 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47046 * 90.00489 * 10 8 6 12 12 H 1.48504 * 109.47347 * 210.00204 * 10 8 6 13 13 H 1.48494 * 109.47196 * 330.00067 * 10 8 6 14 14 N 1.46496 * 109.47180 * 120.00357 * 2 1 3 15 15 C 1.46497 * 120.00241 * 66.86417 * 14 2 1 16 16 C 1.34779 * 119.99983 * 246.86298 * 14 2 1 17 17 O 1.21288 * 119.99935 * 175.40575 * 16 14 2 18 18 C 1.50703 * 120.00070 * 355.68034 * 16 14 2 19 19 C 1.52995 * 110.34300 * 66.20951 * 18 16 14 20 20 C 1.51097 * 110.38549 * 303.92040 * 18 16 14 21 21 C 1.30530 * 111.10760 * 224.75056 * 20 18 16 22 22 C 1.51102 * 111.09961 * 0.02562 * 21 20 18 23 23 C 1.54630 * 110.38637 * 188.62163 * 18 16 14 24 24 H 1.09001 * 109.46833 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47351 * 299.99463 * 1 2 3 26 26 H 1.08995 * 109.47236 * 59.99799 * 1 2 3 27 27 H 1.08998 * 109.47265 * 303.82904 * 4 2 1 28 28 H 1.08998 * 109.47255 * 63.83159 * 4 2 1 29 29 H 0.96999 * 120.00276 * 6.21341 * 5 4 2 30 30 H 0.97001 * 120.00373 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.47143 * 274.85950 * 15 14 2 32 32 H 1.09001 * 109.47515 * 34.85815 * 15 14 2 33 33 H 1.09007 * 109.47400 * 154.85909 * 15 14 2 34 34 H 1.09003 * 109.47122 * 66.29890 * 19 18 16 35 35 H 1.09003 * 109.46779 * 186.29621 * 19 18 16 36 36 H 1.09001 * 109.47173 * 306.29154 * 19 18 16 37 37 H 1.08001 * 124.44772 * 44.77301 * 20 18 16 38 38 H 1.08004 * 124.44898 * 180.02562 * 21 20 18 39 39 H 1.09007 * 110.38326 * 135.24766 * 22 21 20 40 40 H 1.08996 * 110.38944 * 257.50877 * 22 21 20 41 41 H 1.09001 * 111.03495 * 261.47839 * 23 18 16 42 42 H 1.09005 * 111.04020 * 25.40702 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5021 -0.8015 -1.2041 6 6 4.1944 -1.2935 -2.2783 7 1 3.6625 -1.6220 -3.1590 8 6 5.5797 -1.3700 -2.2352 9 7 6.2451 -1.8425 -3.2679 10 14 6.4996 -0.8026 -0.7117 11 1 6.6555 -1.9435 0.2260 12 1 7.8399 -0.2965 -1.1025 13 1 5.7348 0.2832 -0.0474 14 7 2.0183 -0.6907 1.1961 15 6 1.7925 -2.1294 1.3547 16 6 2.6753 -0.0024 2.1506 17 8 3.0064 -0.5557 3.1780 18 6 2.9933 1.4561 1.9441 19 6 1.7052 2.2808 1.9040 20 6 3.7809 1.6477 0.6689 21 6 4.7842 2.4620 0.8540 22 6 4.8332 2.9487 2.2836 23 6 3.9286 1.9674 3.0643 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.6217 -1.7271 -1.2843 28 1 1.7338 -0.1692 -2.1379 29 1 3.9799 -0.5063 -0.4132 30 1 7.2132 -1.8956 -3.2380 31 1 0.8076 -2.2968 1.7904 32 1 1.8461 -2.6153 0.3804 33 1 2.5560 -2.5469 2.0113 34 1 1.2261 2.2541 2.8828 35 1 1.9422 3.3123 1.6435 36 1 1.0297 1.8635 1.1572 37 1 3.5446 1.1735 -0.2722 38 1 5.4869 2.7500 0.0860 39 1 5.8542 2.9088 2.6634 40 1 4.4426 3.9639 2.3527 41 1 3.3641 2.4870 3.8386 42 1 4.5127 1.1511 3.4894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319511829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:20 Heat of formation + Delta-G solvation = 15.247656 kcal Electronic energy + Delta-G solvation = -22362.202440 eV Core-core repulsion = 19343.878610 eV Total energy + Delta-G solvation = -3018.323830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87479 -37.78527 -36.90711 -34.06883 -31.66220 -31.43377 -30.40495 -28.99252 -26.89706 -26.07191 -25.13270 -22.55244 -21.81225 -20.63685 -19.15460 -18.87840 -17.59823 -16.36595 -15.90044 -15.43260 -15.01019 -14.74493 -14.64655 -14.06604 -13.43071 -13.23641 -13.08740 -12.76562 -12.65613 -12.50599 -12.33342 -12.07266 -11.92393 -11.85501 -11.57501 -11.42179 -11.19357 -11.11644 -10.94033 -10.82847 -10.77967 -10.35937 -10.15783 -9.61786 -9.48155 -8.95829 -8.61685 -8.40138 -7.28085 -5.79949 -3.17118 2.35232 2.92691 3.24001 3.39685 3.45363 3.50235 4.47650 4.56975 4.59214 4.82979 4.92545 5.03007 5.16802 5.31873 5.34501 5.36792 5.51147 5.53311 5.60716 5.68076 5.71475 5.76134 5.78459 5.81053 5.86533 5.88045 5.98285 6.05102 6.13757 6.21225 6.24639 6.31556 6.40153 6.52619 6.76250 6.79629 7.03452 7.63255 7.94843 8.37920 8.40918 9.17115 9.89359 10.07830 11.37417 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.009854 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.282445 B = 2840.875952 C = 3676.897599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 H 0.112 0.888 4 C 0.142 3.858 5 N -0.753 5.753 6 C -0.250 4.250 7 H 0.090 0.910 8 C 0.010 3.990 9 N -0.932 5.932 10 Si 0.861 3.139 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.253 1.253 14 N -0.596 5.596 15 C 0.083 3.917 16 C 0.527 3.473 17 O -0.547 6.547 18 C -0.059 4.059 19 C -0.144 4.144 20 C -0.178 4.178 21 C -0.149 4.149 22 C -0.102 4.102 23 C -0.104 4.104 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.030 0.970 28 H 0.045 0.955 29 H 0.366 0.634 30 H 0.259 0.741 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.157 0.843 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.890 9.533 9.985 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.006 4.006 3 H 0.130 0.870 4 C 0.014 3.986 5 N -0.402 5.402 6 C -0.379 4.379 7 H 0.108 0.892 8 C -0.186 4.186 9 N -0.579 5.579 10 Si 0.691 3.309 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.178 1.178 14 N -0.328 5.328 15 C -0.059 4.059 16 C 0.315 3.685 17 O -0.425 6.425 18 C -0.062 4.062 19 C -0.201 4.201 20 C -0.196 4.196 21 C -0.167 4.167 22 C -0.139 4.139 23 C -0.141 4.141 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.202 0.798 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.174 0.826 38 H 0.146 0.854 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.676 9.121 10.307 17.418 hybrid contribution 0.884 0.125 0.762 1.174 sum -9.792 9.245 11.070 17.433 Atomic orbital electron populations 1.22151 0.94843 1.02813 1.02178 1.22100 0.94324 0.98797 0.85406 0.87045 1.21041 0.85784 0.97869 0.93905 1.42888 1.00968 1.78165 1.18137 1.19017 0.89585 1.34758 0.94549 0.89180 1.24637 0.96156 1.00789 0.97006 1.69699 1.07005 1.51414 1.29772 0.86921 0.80109 0.79903 0.84015 1.21390 1.21835 1.17781 1.47741 1.55956 1.09174 1.19970 1.21623 1.00796 0.80453 1.03037 1.20469 0.76601 0.88654 0.82765 1.90633 1.53652 1.70844 1.27356 1.20657 0.97308 0.92267 0.96001 1.22063 0.95171 1.00053 1.02781 1.23854 0.97079 1.00218 0.98465 1.23330 0.97828 0.98191 0.97381 1.21420 1.00277 0.98958 0.93238 1.22455 0.96773 0.99062 0.95844 0.91927 0.92308 0.91071 0.95237 0.93705 0.79787 0.93062 0.93353 0.90248 0.90832 0.92000 0.91248 0.90798 0.82626 0.85406 0.91065 0.90639 0.90654 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.73 37.16 0.32 -1.44 16 2 C 0.10 1.41 1.35 -67.93 -0.09 1.32 16 3 H 0.11 1.59 2.90 -51.93 -0.15 1.44 16 4 C 0.14 2.54 5.18 -4.04 -0.02 2.52 16 5 N -0.75 -17.18 4.37 -59.91 -0.26 -17.44 16 6 C -0.25 -6.90 10.47 -15.06 -0.16 -7.06 16 7 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 8 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 9 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 10 Si 0.86 22.05 27.74 -169.99 -4.71 17.34 16 11 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 12 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 13 H -0.25 -5.85 3.99 56.52 0.23 -5.62 16 14 N -0.60 -9.73 2.17 -173.93 -0.38 -10.11 16 15 C 0.08 1.31 9.80 59.85 0.59 1.89 16 16 C 0.53 9.32 6.51 -10.98 -0.07 9.25 16 17 O -0.55 -11.19 15.14 5.55 0.08 -11.10 16 18 C -0.06 -0.88 0.56 -155.76 -0.09 -0.97 16 19 C -0.14 -1.65 8.14 37.16 0.30 -1.35 16 20 C -0.18 -2.93 5.80 -35.70 -0.21 -3.14 16 21 C -0.15 -2.29 9.77 -35.70 -0.35 -2.64 16 22 C -0.10 -1.30 6.81 -26.84 -0.18 -1.49 16 23 C -0.10 -1.46 5.94 -25.02 -0.15 -1.61 16 24 H 0.06 0.67 7.85 -51.93 -0.41 0.26 16 25 H 0.06 0.59 7.15 -51.93 -0.37 0.22 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.54 6.75 -51.93 -0.35 0.19 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.37 8.34 2.97 -40.82 -0.12 8.22 16 30 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.26 6.24 -51.93 -0.32 0.94 16 33 H 0.07 1.27 7.35 -51.92 -0.38 0.89 16 34 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 35 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 36 H 0.07 0.81 3.84 -51.93 -0.20 0.61 16 37 H 0.16 2.86 3.72 -52.49 -0.20 2.67 16 38 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 39 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.90 7.89 -51.93 -0.41 0.49 16 42 H 0.08 1.38 7.15 -51.93 -0.37 1.01 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -32.99 311.34 -6.40 -39.39 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.40 Total: 10.19 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.14 Total: -56.00 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.99 -6.40 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319511829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.634 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds