Wall clock time and date at job start Mon Mar 30 2020 19:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47290 * 2 1 4 4 C 1.53001 * 109.47177 * 240.00278 * 2 1 3 5 5 N 1.46505 * 109.47006 * 183.82506 * 4 2 1 6 6 C 1.36942 * 119.99919 * 186.20102 * 5 4 2 7 7 H 1.08002 * 120.00051 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99697 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99826 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00279 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47046 * 90.00489 * 10 8 6 12 12 H 1.48504 * 109.47347 * 210.00204 * 10 8 6 13 13 H 1.48494 * 109.47196 * 330.00067 * 10 8 6 14 14 N 1.46496 * 109.47180 * 120.00357 * 2 1 3 15 15 C 1.46497 * 120.00241 * 66.86417 * 14 2 1 16 16 C 1.34779 * 119.99983 * 246.86298 * 14 2 1 17 17 O 1.21288 * 119.99935 * 175.40575 * 16 14 2 18 18 C 1.50703 * 120.00070 * 355.68034 * 16 14 2 19 19 C 1.52995 * 110.34300 * 66.20951 * 18 16 14 20 20 C 1.51097 * 110.38549 * 303.92040 * 18 16 14 21 21 C 1.30530 * 111.10760 * 224.75056 * 20 18 16 22 22 C 1.51102 * 111.09961 * 0.02562 * 21 20 18 23 23 C 1.54630 * 110.38637 * 188.62163 * 18 16 14 24 24 H 1.09001 * 109.46833 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47351 * 299.99463 * 1 2 3 26 26 H 1.08995 * 109.47236 * 59.99799 * 1 2 3 27 27 H 1.08998 * 109.47265 * 303.82904 * 4 2 1 28 28 H 1.08998 * 109.47255 * 63.83159 * 4 2 1 29 29 H 0.96999 * 120.00276 * 6.21341 * 5 4 2 30 30 H 0.97001 * 120.00373 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.47143 * 274.85950 * 15 14 2 32 32 H 1.09001 * 109.47515 * 34.85815 * 15 14 2 33 33 H 1.09007 * 109.47400 * 154.85909 * 15 14 2 34 34 H 1.09003 * 109.47122 * 66.29890 * 19 18 16 35 35 H 1.09003 * 109.46779 * 186.29621 * 19 18 16 36 36 H 1.09001 * 109.47173 * 306.29154 * 19 18 16 37 37 H 1.08001 * 124.44772 * 44.77301 * 20 18 16 38 38 H 1.08004 * 124.44898 * 180.02562 * 21 20 18 39 39 H 1.09007 * 110.38326 * 135.24766 * 22 21 20 40 40 H 1.08996 * 110.38944 * 257.50877 * 22 21 20 41 41 H 1.09001 * 111.03495 * 261.47839 * 23 18 16 42 42 H 1.09005 * 111.04020 * 25.40702 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5021 -0.8015 -1.2041 6 6 4.1944 -1.2935 -2.2783 7 1 3.6625 -1.6220 -3.1590 8 6 5.5797 -1.3700 -2.2352 9 7 6.2451 -1.8425 -3.2679 10 14 6.4996 -0.8026 -0.7117 11 1 6.6555 -1.9435 0.2260 12 1 7.8399 -0.2965 -1.1025 13 1 5.7348 0.2832 -0.0474 14 7 2.0183 -0.6907 1.1961 15 6 1.7925 -2.1294 1.3547 16 6 2.6753 -0.0024 2.1506 17 8 3.0064 -0.5557 3.1780 18 6 2.9933 1.4561 1.9441 19 6 1.7052 2.2808 1.9040 20 6 3.7809 1.6477 0.6689 21 6 4.7842 2.4620 0.8540 22 6 4.8332 2.9487 2.2836 23 6 3.9286 1.9674 3.0643 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.6217 -1.7271 -1.2843 28 1 1.7338 -0.1692 -2.1379 29 1 3.9799 -0.5063 -0.4132 30 1 7.2132 -1.8956 -3.2380 31 1 0.8076 -2.2968 1.7904 32 1 1.8461 -2.6153 0.3804 33 1 2.5560 -2.5469 2.0113 34 1 1.2261 2.2541 2.8828 35 1 1.9422 3.3123 1.6435 36 1 1.0297 1.8635 1.1572 37 1 3.5446 1.1735 -0.2722 38 1 5.4869 2.7500 0.0860 39 1 5.8542 2.9088 2.6634 40 1 4.4426 3.9639 2.3527 41 1 3.3641 2.4870 3.8386 42 1 4.5127 1.1511 3.4894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319511829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:20 Heat of formation + Delta-G solvation = -5.845401 kcal Electronic energy + Delta-G solvation = -22363.117103 eV Core-core repulsion = 19343.878610 eV Total energy + Delta-G solvation = -3019.238493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.09809 -38.96948 -38.33196 -35.90531 -33.48179 -32.56724 -31.82277 -30.12119 -28.06929 -27.67761 -26.14883 -24.23063 -23.31060 -21.80215 -20.36191 -20.28451 -19.44166 -17.57867 -17.26118 -16.70436 -16.55325 -16.34941 -15.95343 -15.63177 -14.87966 -14.58810 -14.29198 -14.16972 -14.04494 -13.71427 -13.60758 -13.30982 -13.21534 -13.03259 -12.98892 -12.71434 -12.63655 -12.29908 -12.29739 -12.21044 -12.10668 -11.88313 -11.77752 -11.51312 -11.03814 -10.76584 -9.84048 -9.69277 -9.30930 -8.06903 -5.38825 1.14519 1.30402 1.36272 1.40428 1.62459 2.01697 2.42810 3.25062 3.34908 3.45145 3.56205 3.79810 3.90421 4.00548 4.17860 4.26275 4.34901 4.35819 4.40820 4.60733 4.63375 4.71507 4.77703 4.79011 4.84183 4.90539 4.93136 4.98467 4.99339 5.09444 5.14163 5.15278 5.27984 5.38153 5.54788 5.58895 5.74472 5.84071 6.16764 6.36477 7.04632 7.10402 7.81609 7.98380 9.13711 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.009854 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.282445 B = 2840.875952 C = 3676.897599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.103 3.897 3 H 0.119 0.881 4 C 0.135 3.865 5 N -0.756 5.756 6 C -0.224 4.224 7 H 0.065 0.935 8 C -0.054 4.054 9 N -0.979 5.979 10 Si 0.917 3.083 11 H -0.305 1.305 12 H -0.296 1.296 13 H -0.221 1.221 14 N -0.599 5.599 15 C 0.083 3.917 16 C 0.516 3.484 17 O -0.584 6.584 18 C -0.056 4.056 19 C -0.139 4.139 20 C -0.200 4.200 21 C -0.151 4.151 22 C -0.095 4.095 23 C -0.105 4.105 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.368 0.632 30 H 0.256 0.744 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 11.868 11.458 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.001 3.999 3 H 0.137 0.863 4 C 0.008 3.992 5 N -0.404 5.404 6 C -0.356 4.356 7 H 0.083 0.917 8 C -0.246 4.246 9 N -0.630 5.630 10 Si 0.746 3.254 11 H -0.233 1.233 12 H -0.223 1.223 13 H -0.144 1.144 14 N -0.330 5.330 15 C -0.060 4.060 16 C 0.305 3.695 17 O -0.465 6.465 18 C -0.059 4.059 19 C -0.196 4.196 20 C -0.218 4.218 21 C -0.168 4.168 22 C -0.132 4.132 23 C -0.143 4.143 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.204 0.796 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.625 11.487 11.783 20.740 hybrid contribution 1.381 -0.658 0.236 1.548 sum -11.244 10.828 12.018 19.701 Atomic orbital electron populations 1.22127 0.91483 1.03675 1.04010 1.22165 0.96737 0.98187 0.82839 0.86328 1.21303 0.82829 0.98630 0.96414 1.42923 1.03093 1.77637 1.16733 1.19050 0.89587 1.32182 0.94737 0.91661 1.25283 0.97286 1.02384 0.99619 1.69844 1.06959 1.54196 1.32042 0.86033 0.79016 0.79747 0.80639 1.23283 1.22309 1.14391 1.47914 1.55558 1.09335 1.20164 1.21630 1.01629 0.80386 1.02351 1.21097 0.76045 0.89936 0.82423 1.90612 1.55067 1.71854 1.28934 1.20730 0.98942 0.90831 0.95387 1.22083 0.93418 1.00410 1.03708 1.23766 0.98427 1.01257 0.98389 1.23616 0.96892 0.97454 0.98887 1.21450 1.00672 1.00049 0.91009 1.22485 0.96854 0.98642 0.96327 0.91627 0.90666 0.89048 0.95044 0.92717 0.79624 0.93548 0.90506 0.90850 0.93057 0.90913 0.89348 0.90230 0.84676 0.85484 0.90387 0.87448 0.88236 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.73 71.98 0.63 -2.17 16 2 C 0.10 2.74 1.35 44.99 0.06 2.80 16 3 H 0.12 3.04 2.90 -2.39 -0.01 3.04 16 4 C 0.13 4.62 5.18 86.38 0.45 5.07 16 5 N -0.76 -34.01 4.37 -343.44 -1.50 -35.51 16 6 C -0.22 -12.54 10.47 84.03 0.88 -11.66 16 7 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 8 C -0.05 -3.20 5.50 84.86 0.47 -2.73 16 9 N -0.98 -63.20 13.97 21.65 0.30 -62.89 16 10 Si 0.92 46.49 27.74 68.60 1.90 48.40 16 11 H -0.30 -16.27 7.11 99.48 0.71 -15.56 16 12 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 13 H -0.22 -9.83 3.99 99.48 0.40 -9.44 16 14 N -0.60 -18.50 2.17 -822.59 -1.79 -20.29 16 15 C 0.08 2.50 9.80 127.77 1.25 3.76 16 16 C 0.52 17.45 6.51 87.66 0.57 18.02 16 17 O -0.58 -23.61 15.14 -3.05 -0.05 -23.66 16 18 C -0.06 -1.52 0.56 -52.99 -0.03 -1.55 16 19 C -0.14 -2.65 8.14 71.98 0.59 -2.06 16 20 C -0.20 -6.12 5.80 26.26 0.15 -5.97 16 21 C -0.15 -4.22 9.77 26.26 0.26 -3.96 16 22 C -0.10 -2.10 6.81 30.53 0.21 -1.89 16 23 C -0.11 -2.68 5.94 31.70 0.19 -2.49 16 24 H 0.06 1.17 7.85 -2.39 -0.02 1.15 16 25 H 0.07 1.17 7.15 -2.39 -0.02 1.15 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.03 1.09 6.75 -2.39 -0.02 1.08 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.37 16.43 2.97 -92.71 -0.27 16.16 16 30 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 2.28 6.24 -2.39 -0.01 2.26 16 33 H 0.05 1.78 7.35 -2.38 -0.02 1.76 16 34 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 35 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 36 H 0.08 1.40 3.84 -2.39 -0.01 1.39 16 37 H 0.14 4.72 3.72 -2.91 -0.01 4.71 16 38 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.08 1.64 8.14 -2.38 -0.02 1.63 16 40 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.10 2.01 7.89 -2.39 -0.02 1.99 16 42 H 0.06 1.75 7.15 -2.38 -0.02 1.73 16 Total: -1.00 -73.38 311.34 4.97 -68.41 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.44 Total: 30.39 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.67 Total: -4.85 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -2.99 Total: -118.69 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.05 Total: -23.66 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.40 kcal Total: -73.38 4.97 -68.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319511829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.569 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds