Wall clock time and date at job start Mon Mar 30 2020 19:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46679 * 2 1 4 4 C 1.52992 * 109.47012 * 120.00478 * 2 1 3 5 5 N 1.46507 * 109.47048 * 174.99844 * 4 2 1 6 6 C 1.36938 * 119.99926 * 179.97438 * 5 4 2 7 7 H 1.07994 * 119.99959 * 0.02562 * 6 5 4 8 8 C 1.38816 * 119.99655 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99779 * 359.72692 * 8 6 5 10 10 Si 1.86800 * 119.99714 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47131 * 60.00014 * 10 8 6 12 12 H 1.48500 * 109.46653 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47028 * 299.99772 * 10 8 6 14 14 N 1.46498 * 109.46666 * 240.00640 * 2 1 3 15 15 C 1.46506 * 119.99818 * 299.99484 * 14 2 1 16 16 C 1.34778 * 120.00328 * 120.00443 * 14 2 1 17 17 O 1.21286 * 119.99683 * 5.12200 * 16 14 2 18 18 C 1.50701 * 120.00212 * 185.12865 * 16 14 2 19 19 C 1.53000 * 110.34238 * 55.46416 * 18 16 14 20 20 C 1.51102 * 110.38449 * 293.17879 * 18 16 14 21 21 C 1.30534 * 111.09920 * 224.75221 * 20 18 16 22 22 C 1.51099 * 111.10493 * 359.97438 * 21 20 18 23 23 C 1.54633 * 110.38662 * 177.87140 * 18 16 14 24 24 H 1.08992 * 109.47461 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47018 * 299.99651 * 1 2 3 26 26 H 1.09003 * 109.47460 * 59.99430 * 1 2 3 27 27 H 1.08995 * 109.47798 * 54.99892 * 4 2 1 28 28 H 1.08999 * 109.47449 * 294.99643 * 4 2 1 29 29 H 0.97000 * 119.99419 * 359.97438 * 5 4 2 30 30 H 0.97003 * 119.99698 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.46665 * 85.72141 * 15 14 2 32 32 H 1.09000 * 109.46754 * 205.71895 * 15 14 2 33 33 H 1.08993 * 109.47412 * 325.72142 * 15 14 2 34 34 H 1.09001 * 109.47268 * 60.70327 * 19 18 16 35 35 H 1.09002 * 109.46824 * 180.69986 * 19 18 16 36 36 H 1.09001 * 109.47409 * 300.69963 * 19 18 16 37 37 H 1.07996 * 124.45229 * 44.76999 * 20 18 16 38 38 H 1.08000 * 124.44069 * 180.02562 * 21 20 18 39 39 H 1.09004 * 110.38138 * 135.24521 * 22 21 20 40 40 H 1.08997 * 110.38966 * 257.51068 * 22 21 20 41 41 H 1.08993 * 111.03844 * 261.47774 * 23 18 16 42 42 H 1.09009 * 111.03765 * 25.41364 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1839 -1.4381 2.2070 7 1 3.6468 -1.8433 3.0518 8 6 5.5674 -1.5373 2.1516 9 7 6.2214 -1.0482 1.1194 10 14 6.5002 -2.3722 3.5381 11 1 6.0443 -3.7799 3.6639 12 1 7.9549 -2.3482 3.2406 13 1 6.2428 -1.6529 4.8114 14 7 2.0182 -0.6905 -1.1963 15 6 1.6643 -2.0931 -1.4281 16 6 2.7931 -0.0355 -2.0834 17 8 3.1630 1.0951 -1.8468 18 6 3.1998 -0.7078 -3.3694 19 6 1.9635 -1.1839 -4.1348 20 6 4.1236 -1.8697 -3.0866 21 6 5.1399 -1.8721 -3.9058 22 6 5.0629 -0.7127 -4.8717 23 6 4.0371 0.2573 -4.2404 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.6054 -1.7198 1.2951 28 1 1.7517 -0.1585 2.1369 29 1 3.9823 -0.4628 0.4314 30 1 7.1881 -1.1178 1.0805 31 1 0.6996 -2.1457 -1.9326 32 1 2.4261 -2.5618 -2.0511 33 1 1.6039 -2.6153 -0.4733 34 1 1.3340 -0.3276 -4.3770 35 1 2.2741 -1.6784 -5.0552 36 1 1.4016 -1.8849 -3.5175 37 1 3.9639 -2.6020 -2.3091 38 1 5.9313 -2.6069 -3.8950 39 1 6.0356 -0.2293 -4.9629 40 1 4.7161 -1.0536 -5.8472 41 1 3.4207 0.7275 -5.0065 42 1 4.5345 1.0076 -3.6257 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319511830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:24 Heat of formation + Delta-G solvation = 6.822230 kcal Electronic energy + Delta-G solvation = -21777.440003 eV Core-core repulsion = 18758.750819 eV Total energy + Delta-G solvation = -3018.689184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51885 -37.85930 -36.11426 -34.00572 -32.28431 -30.59483 -29.86551 -28.66013 -26.72602 -25.60342 -25.22397 -22.80728 -21.93537 -19.81612 -19.08845 -18.55760 -16.99552 -16.36229 -16.12189 -15.22047 -14.91932 -14.69645 -14.23263 -13.60570 -13.34120 -13.26919 -12.98221 -12.57226 -12.37019 -12.30769 -12.20718 -12.15302 -11.90976 -11.52321 -11.38582 -11.27831 -11.02273 -10.85778 -10.79762 -10.71406 -10.52047 -10.36721 -10.02649 -9.63801 -9.29032 -8.81998 -8.64443 -8.12761 -6.83558 -5.67116 -2.96661 2.42987 3.19274 3.44457 3.46802 3.50989 3.52267 4.61490 4.63992 4.73383 5.01912 5.13289 5.29091 5.34135 5.44629 5.48378 5.52602 5.60836 5.64699 5.67633 5.70046 5.80052 5.80831 5.94507 5.98892 6.04678 6.09372 6.17891 6.21881 6.26491 6.30062 6.43855 6.50673 6.58211 6.75029 6.79684 7.07102 7.11249 7.74189 7.87932 8.49887 8.69171 9.61307 10.21329 10.57260 11.54320 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.007344 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.680148 B = 3811.662260 C = 4889.617001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.124 3.876 3 H 0.098 0.902 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.242 4.242 7 H 0.067 0.933 8 C -0.012 4.012 9 N -0.926 5.926 10 Si 0.905 3.095 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.593 5.593 15 C 0.066 3.934 16 C 0.532 3.468 17 O -0.538 6.538 18 C -0.055 4.055 19 C -0.143 4.143 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.099 4.099 23 C -0.106 4.106 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.019 0.981 28 H 0.026 0.974 29 H 0.388 0.612 30 H 0.254 0.746 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 -2.265 -12.350 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.116 0.884 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.373 4.373 7 H 0.085 0.915 8 C -0.209 4.209 9 N -0.574 5.574 10 Si 0.736 3.264 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.214 1.214 14 N -0.326 5.326 15 C -0.076 4.076 16 C 0.320 3.680 17 O -0.414 6.414 18 C -0.058 4.058 19 C -0.200 4.200 20 C -0.168 4.168 21 C -0.173 4.173 22 C -0.136 4.136 23 C -0.144 4.144 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.222 0.778 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.958 -1.735 -12.075 15.747 hybrid contribution 0.780 -0.566 0.761 1.228 sum -9.179 -2.301 -11.313 14.749 Atomic orbital electron populations 1.22042 0.95326 1.01961 1.01872 1.21363 0.93078 0.98514 0.84951 0.88394 1.20984 0.87214 0.96642 0.93659 1.42305 0.99636 1.70090 1.25128 1.19155 0.89426 1.29572 0.99162 0.91457 1.24744 0.96439 1.01716 0.97957 1.69695 1.07106 1.50739 1.29845 0.86314 0.79069 0.79202 0.81842 1.21431 1.21757 1.21359 1.47556 1.50784 1.11971 1.22249 1.22163 1.00076 0.82561 1.02844 1.20311 0.77106 0.86001 0.84630 1.90658 1.53901 1.19458 1.77425 1.20596 0.96539 0.95199 0.93485 1.22029 0.95921 1.01768 1.00296 1.23142 0.96011 0.98102 0.99561 1.23248 0.97875 0.99012 0.97178 1.21371 0.99755 0.94639 0.97841 1.22486 0.96666 0.97237 0.98004 0.92460 0.91544 0.92783 0.96302 0.95639 0.77751 0.93599 0.93323 0.89747 0.90789 0.92347 0.91760 0.90807 0.84611 0.85593 0.91038 0.91011 0.91029 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.19 37.16 0.34 -1.70 16 2 C 0.12 2.22 2.80 -67.93 -0.19 2.03 16 3 H 0.10 2.00 6.91 -51.93 -0.36 1.65 16 4 C 0.14 2.99 5.49 -4.04 -0.02 2.97 16 5 N -0.73 -19.24 5.43 -59.91 -0.33 -19.57 16 6 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 9 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16 10 Si 0.90 22.92 29.55 -169.99 -5.02 17.89 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 N -0.59 -10.18 2.24 -173.94 -0.39 -10.57 16 15 C 0.07 0.92 7.75 59.85 0.46 1.39 16 16 C 0.53 10.01 6.24 -10.98 -0.07 9.94 16 17 O -0.54 -12.23 14.81 5.55 0.08 -12.15 16 18 C -0.05 -0.83 0.56 -155.76 -0.09 -0.92 16 19 C -0.14 -1.64 8.18 37.16 0.30 -1.34 16 20 C -0.15 -2.35 8.14 -35.70 -0.29 -2.64 16 21 C -0.16 -2.23 10.77 -35.70 -0.38 -2.61 16 22 C -0.10 -1.26 6.81 -26.82 -0.18 -1.44 16 23 C -0.11 -1.55 6.03 -25.00 -0.15 -1.70 16 24 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.38 6.91 -51.93 -0.36 0.02 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.39 11.20 7.06 -40.82 -0.29 10.91 16 30 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.05 0.53 7.03 -51.93 -0.36 0.17 16 32 H 0.08 1.14 3.36 -51.93 -0.17 0.97 16 33 H 0.07 1.10 6.55 -51.93 -0.34 0.76 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.78 4.45 -51.93 -0.23 0.55 16 37 H 0.14 2.23 6.18 -52.49 -0.32 1.91 16 38 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 42 H 0.09 1.61 6.97 -51.92 -0.36 1.25 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -33.74 326.05 -7.07 -40.82 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -6.54 Total: 10.47 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.51 Total: -3.59 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.01 Total: -58.36 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.74 -7.07 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319511830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.639 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds