Wall clock time and date at job start Mon Mar 30 2020 19:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46679 * 2 1 4 4 C 1.52992 * 109.47012 * 120.00478 * 2 1 3 5 5 N 1.46507 * 109.47048 * 174.99844 * 4 2 1 6 6 C 1.36938 * 119.99926 * 179.97438 * 5 4 2 7 7 H 1.07994 * 119.99959 * 0.02562 * 6 5 4 8 8 C 1.38816 * 119.99655 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99779 * 359.72692 * 8 6 5 10 10 Si 1.86800 * 119.99714 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47131 * 60.00014 * 10 8 6 12 12 H 1.48500 * 109.46653 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47028 * 299.99772 * 10 8 6 14 14 N 1.46498 * 109.46666 * 240.00640 * 2 1 3 15 15 C 1.46506 * 119.99818 * 299.99484 * 14 2 1 16 16 C 1.34778 * 120.00328 * 120.00443 * 14 2 1 17 17 O 1.21286 * 119.99683 * 5.12200 * 16 14 2 18 18 C 1.50701 * 120.00212 * 185.12865 * 16 14 2 19 19 C 1.53000 * 110.34238 * 55.46416 * 18 16 14 20 20 C 1.51102 * 110.38449 * 293.17879 * 18 16 14 21 21 C 1.30534 * 111.09920 * 224.75221 * 20 18 16 22 22 C 1.51099 * 111.10493 * 359.97438 * 21 20 18 23 23 C 1.54633 * 110.38662 * 177.87140 * 18 16 14 24 24 H 1.08992 * 109.47461 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47018 * 299.99651 * 1 2 3 26 26 H 1.09003 * 109.47460 * 59.99430 * 1 2 3 27 27 H 1.08995 * 109.47798 * 54.99892 * 4 2 1 28 28 H 1.08999 * 109.47449 * 294.99643 * 4 2 1 29 29 H 0.97000 * 119.99419 * 359.97438 * 5 4 2 30 30 H 0.97003 * 119.99698 * 180.02562 * 9 8 6 31 31 H 1.08994 * 109.46665 * 85.72141 * 15 14 2 32 32 H 1.09000 * 109.46754 * 205.71895 * 15 14 2 33 33 H 1.08993 * 109.47412 * 325.72142 * 15 14 2 34 34 H 1.09001 * 109.47268 * 60.70327 * 19 18 16 35 35 H 1.09002 * 109.46824 * 180.69986 * 19 18 16 36 36 H 1.09001 * 109.47409 * 300.69963 * 19 18 16 37 37 H 1.07996 * 124.45229 * 44.76999 * 20 18 16 38 38 H 1.08000 * 124.44069 * 180.02562 * 21 20 18 39 39 H 1.09004 * 110.38138 * 135.24521 * 22 21 20 40 40 H 1.08997 * 110.38966 * 257.51068 * 22 21 20 41 41 H 1.08993 * 111.03844 * 261.47774 * 23 18 16 42 42 H 1.09009 * 111.03765 * 25.41364 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1839 -1.4381 2.2070 7 1 3.6468 -1.8433 3.0518 8 6 5.5674 -1.5373 2.1516 9 7 6.2214 -1.0482 1.1194 10 14 6.5002 -2.3722 3.5381 11 1 6.0443 -3.7799 3.6639 12 1 7.9549 -2.3482 3.2406 13 1 6.2428 -1.6529 4.8114 14 7 2.0182 -0.6905 -1.1963 15 6 1.6643 -2.0931 -1.4281 16 6 2.7931 -0.0355 -2.0834 17 8 3.1630 1.0951 -1.8468 18 6 3.1998 -0.7078 -3.3694 19 6 1.9635 -1.1839 -4.1348 20 6 4.1236 -1.8697 -3.0866 21 6 5.1399 -1.8721 -3.9058 22 6 5.0629 -0.7127 -4.8717 23 6 4.0371 0.2573 -4.2404 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.6054 -1.7198 1.2951 28 1 1.7517 -0.1585 2.1369 29 1 3.9823 -0.4628 0.4314 30 1 7.1881 -1.1178 1.0805 31 1 0.6996 -2.1457 -1.9326 32 1 2.4261 -2.5618 -2.0511 33 1 1.6039 -2.6153 -0.4733 34 1 1.3340 -0.3276 -4.3770 35 1 2.2741 -1.6784 -5.0552 36 1 1.4016 -1.8849 -3.5175 37 1 3.9639 -2.6020 -2.3091 38 1 5.9313 -2.6069 -3.8950 39 1 6.0356 -0.2293 -4.9629 40 1 4.7161 -1.0536 -5.8472 41 1 3.4207 0.7275 -5.0065 42 1 4.5345 1.0076 -3.6257 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319511830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:23 Heat of formation + Delta-G solvation = -15.047090 kcal Electronic energy + Delta-G solvation = -21778.388328 eV Core-core repulsion = 18758.750819 eV Total energy + Delta-G solvation = -3019.637508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81666 -39.14616 -37.66986 -35.88010 -33.84747 -32.24444 -31.24165 -29.80491 -27.94780 -27.39926 -26.28919 -24.59215 -23.46118 -21.09681 -20.34493 -19.88090 -19.10270 -17.63938 -17.53349 -16.76585 -16.40782 -16.15057 -15.66547 -15.26375 -15.15991 -14.45031 -14.28248 -13.99720 -13.72214 -13.60609 -13.43170 -13.33619 -13.10919 -13.06346 -12.76479 -12.60831 -12.49451 -12.47157 -12.19561 -12.14655 -11.96334 -11.81753 -11.72964 -11.56724 -10.96492 -10.64626 -9.82823 -9.50357 -8.99845 -7.92627 -5.23326 1.24424 1.43389 1.47400 1.53541 1.79936 2.14177 2.54522 3.38689 3.44818 3.58606 3.77692 3.98841 4.05716 4.11351 4.21781 4.30880 4.38076 4.44238 4.47409 4.64470 4.68880 4.74805 4.81573 4.82323 4.86280 4.92253 4.96020 4.98367 5.06167 5.16295 5.20081 5.24647 5.31128 5.38386 5.46433 5.60512 5.72779 5.92189 6.25719 6.52393 7.28274 7.32630 8.09498 8.33307 9.29490 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.007344 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.680148 B = 3811.662260 C = 4889.617001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.127 3.873 3 H 0.062 0.938 4 C 0.141 3.859 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.077 0.923 8 C -0.076 4.076 9 N -0.965 5.965 10 Si 0.975 3.025 11 H -0.274 1.274 12 H -0.297 1.297 13 H -0.280 1.280 14 N -0.592 5.592 15 C 0.062 3.938 16 C 0.518 3.482 17 O -0.592 6.592 18 C -0.050 4.050 19 C -0.136 4.136 20 C -0.175 4.175 21 C -0.153 4.153 22 C -0.092 4.092 23 C -0.110 4.110 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.037 0.963 28 H 0.027 0.973 29 H 0.372 0.628 30 H 0.248 0.752 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 -3.921 -13.160 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.023 3.977 3 H 0.080 0.920 4 C 0.014 3.986 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.095 0.905 8 C -0.268 4.268 9 N -0.616 5.616 10 Si 0.804 3.196 11 H -0.200 1.200 12 H -0.224 1.224 13 H -0.206 1.206 14 N -0.323 5.323 15 C -0.079 4.079 16 C 0.307 3.693 17 O -0.473 6.473 18 C -0.053 4.053 19 C -0.192 4.192 20 C -0.193 4.193 21 C -0.171 4.171 22 C -0.129 4.129 23 C -0.148 4.148 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.204 0.796 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.702 -3.434 -12.862 17.724 hybrid contribution 1.270 -0.034 1.054 1.651 sum -10.432 -3.469 -11.807 16.133 Atomic orbital electron populations 1.21943 0.91135 1.03662 1.03062 1.21264 0.96117 0.96201 0.84140 0.91960 1.21200 0.84278 0.97799 0.95341 1.42520 1.01931 1.69821 1.24119 1.19609 0.89997 1.28666 0.99634 0.90495 1.25615 0.97510 1.03110 1.00583 1.69895 1.06809 1.52755 1.32115 0.85193 0.77021 0.78633 0.78758 1.19967 1.22386 1.20608 1.47696 1.50077 1.13118 1.21441 1.22384 1.02263 0.80409 1.02878 1.21137 0.76458 0.85638 0.86048 1.90624 1.55891 1.21947 1.78795 1.20654 0.98087 0.94591 0.91956 1.22022 0.94186 1.02262 1.00779 1.23126 0.97366 0.98623 1.00138 1.23558 0.97155 0.99393 0.96960 1.21399 0.99450 0.93326 0.98738 1.22496 0.97381 0.96859 0.98057 0.90387 0.90329 0.91699 0.94525 0.95551 0.79634 0.94312 0.89279 0.89402 0.91751 0.91787 0.89548 0.89776 0.85998 0.84634 0.90819 0.87499 0.88663 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.19 71.98 0.66 -2.74 16 2 C 0.13 4.52 2.80 44.99 0.13 4.65 16 3 H 0.06 2.67 6.91 -2.39 -0.02 2.66 16 4 C 0.14 5.86 5.49 86.38 0.47 6.33 16 5 N -0.74 -40.11 5.43 -343.46 -1.87 -41.98 16 6 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 8 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 9 N -0.97 -62.18 13.06 21.65 0.28 -61.90 16 10 Si 0.98 47.59 29.55 68.60 2.03 49.61 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 N -0.59 -20.24 2.24 -822.60 -1.84 -22.08 16 15 C 0.06 1.63 7.75 127.77 0.99 2.62 16 16 C 0.52 19.98 6.24 87.66 0.55 20.53 16 17 O -0.59 -28.56 14.81 -3.05 -0.05 -28.60 16 18 C -0.05 -1.48 0.56 -52.99 -0.03 -1.51 16 19 C -0.14 -2.74 8.18 71.98 0.59 -2.15 16 20 C -0.17 -5.44 8.14 26.25 0.21 -5.22 16 21 C -0.15 -4.27 10.77 26.25 0.28 -3.98 16 22 C -0.09 -2.20 6.81 30.54 0.21 -2.00 16 23 C -0.11 -3.19 6.03 31.71 0.19 -3.00 16 24 H 0.08 1.59 7.67 -2.39 -0.02 1.57 16 25 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.42 6.91 -2.39 -0.02 1.40 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.37 22.39 7.06 -92.71 -0.65 21.73 16 30 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.09 1.63 7.03 -2.39 -0.02 1.61 16 32 H 0.09 2.28 3.36 -2.39 -0.01 2.27 16 33 H 0.06 1.81 6.55 -2.39 -0.02 1.80 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.50 4.45 -2.39 -0.01 1.49 16 37 H 0.12 4.08 6.18 -2.91 -0.02 4.07 16 38 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.09 2.23 7.90 -2.39 -0.02 2.22 16 42 H 0.05 1.86 6.97 -2.38 -0.02 1.84 16 Total: -1.00 -76.42 326.05 4.47 -71.95 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: 0.36 Total: 37.04 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 5.56 Total: -4.04 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -3.43 Total: -125.95 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Total: -76.42 4.47 -71.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319511830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.900 kcal (2) G-P(sol) polarization free energy of solvation -76.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds