Wall clock time and date at job start Mon Mar 30 2020 19:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47603 * 2 1 4 4 C 1.53000 * 109.46958 * 240.00036 * 2 1 3 5 5 N 1.46499 * 109.47066 * 185.00376 * 4 2 1 6 6 C 1.36937 * 119.99735 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00233 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00036 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99880 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00400 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47288 * 90.00066 * 10 8 6 12 12 H 1.48504 * 109.47415 * 210.00123 * 10 8 6 13 13 H 1.48504 * 109.46981 * 330.00107 * 10 8 6 14 14 N 1.46502 * 109.46932 * 120.00305 * 2 1 3 15 15 C 1.46493 * 120.00171 * 59.99938 * 14 2 1 16 16 C 1.34778 * 119.99599 * 239.99549 * 14 2 1 17 17 O 1.21282 * 120.00082 * 5.27149 * 16 14 2 18 18 C 1.50703 * 119.99763 * 185.27083 * 16 14 2 19 19 C 1.52997 * 110.43402 * 299.23112 * 18 16 14 20 20 C 1.51099 * 110.38796 * 61.58210 * 18 16 14 21 21 C 1.30525 * 111.10680 * 102.37317 * 20 18 16 22 22 C 1.51165 * 111.11606 * 0.03326 * 21 20 18 23 23 C 1.54636 * 110.38568 * 176.88711 * 18 16 14 24 24 H 1.08997 * 109.47186 * 59.99606 * 1 2 3 25 25 H 1.08998 * 109.47165 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46794 * 300.00088 * 1 2 3 27 27 H 1.09003 * 109.47096 * 304.99840 * 4 2 1 28 28 H 1.09003 * 109.47052 * 65.00107 * 4 2 1 29 29 H 0.96997 * 120.00158 * 359.97438 * 5 4 2 30 30 H 0.96999 * 120.00418 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.47141 * 275.22948 * 15 14 2 32 32 H 1.08997 * 109.47463 * 35.23376 * 15 14 2 33 33 H 1.09005 * 109.47104 * 155.23715 * 15 14 2 34 34 H 1.09001 * 109.47510 * 297.65139 * 19 18 16 35 35 H 1.09004 * 109.47469 * 57.65250 * 19 18 16 36 36 H 1.09003 * 109.47436 * 177.65220 * 19 18 16 37 37 H 1.08006 * 124.44568 * 282.39393 * 20 18 16 38 38 H 1.07998 * 124.45158 * 180.02562 * 21 20 18 39 39 H 1.09001 * 110.38347 * 257.58661 * 22 21 20 40 40 H 1.09002 * 110.42395 * 135.19362 * 22 21 20 41 41 H 1.08996 * 111.03650 * 23.85022 * 23 18 16 42 42 H 1.09002 * 111.03675 * 147.75102 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.1837 -1.4380 -2.2072 7 1 3.6467 -1.8431 -3.0521 8 6 5.5672 -1.5373 -2.1520 9 7 6.2219 -1.0431 -1.1225 10 14 6.5000 -2.3721 -3.5384 11 1 6.8618 -1.3653 -4.5682 12 1 7.7357 -2.9947 -2.9992 13 1 5.6440 -3.4202 -4.1501 14 7 2.0183 -0.6907 1.1962 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0833 17 8 3.0077 1.1496 1.9421 18 6 3.3931 -0.7762 3.2507 19 6 2.2908 -1.3653 4.1331 20 6 4.3168 -1.8681 2.7630 21 6 5.5672 -1.5105 2.8744 22 6 5.6863 -0.1203 3.4559 23 6 4.2994 0.1652 4.0775 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.6053 -1.7198 -1.2951 28 1 1.7516 -0.1583 -2.1370 29 1 3.9824 -0.4623 -0.4319 30 1 7.1886 -1.1128 -1.0836 31 1 0.6919 -2.1464 1.9174 32 1 1.6205 -2.6193 0.4743 33 1 2.4174 -2.5575 2.0648 34 1 1.6839 -0.5583 4.5437 35 1 1.6615 -2.0256 3.5363 36 1 2.7414 -1.9317 4.9481 37 1 3.9858 -2.8193 2.3731 38 1 6.4067 -2.1270 2.5887 39 1 5.9063 0.6024 2.6701 40 1 6.4593 -0.0943 4.2241 41 1 4.0140 1.2075 3.9354 42 1 4.2815 -0.1026 5.1340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319511831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:27 Heat of formation + Delta-G solvation = 6.718872 kcal Electronic energy + Delta-G solvation = -22006.634863 eV Core-core repulsion = 18987.941198 eV Total energy + Delta-G solvation = -3018.693665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49980 -37.65363 -36.05593 -34.01225 -32.31363 -30.70699 -29.86778 -28.51036 -26.70532 -25.59499 -24.68728 -22.87338 -22.04730 -19.82172 -18.97782 -18.46422 -17.00125 -16.29956 -16.07981 -15.13134 -14.83695 -14.66565 -14.00027 -13.59337 -13.44913 -13.23152 -13.06761 -12.60347 -12.37223 -12.21863 -12.10853 -11.98619 -11.71419 -11.46576 -11.43743 -11.17529 -10.87009 -10.82489 -10.71857 -10.63857 -10.45571 -10.30914 -10.01296 -9.65406 -9.45515 -8.83172 -8.36679 -8.12696 -6.84227 -5.68344 -2.97421 2.62701 3.23831 3.44775 3.48220 3.50665 3.51493 4.62545 4.75829 4.87041 5.01400 5.23314 5.35510 5.38570 5.48717 5.55963 5.60593 5.63870 5.68807 5.75045 5.79470 5.85072 5.95284 6.03238 6.10355 6.10857 6.17519 6.18456 6.25339 6.33905 6.43193 6.44071 6.57231 6.62871 6.79484 6.96152 7.10701 7.30081 7.73879 7.89182 8.48357 8.69702 9.60173 10.19685 10.55852 11.52872 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.008062 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.830706 B = 3472.351352 C = 4533.771142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.098 0.902 4 C 0.143 3.857 5 N -0.726 5.726 6 C -0.241 4.241 7 H 0.067 0.933 8 C -0.011 4.011 9 N -0.923 5.923 10 Si 0.903 3.097 11 H -0.291 1.291 12 H -0.293 1.293 13 H -0.284 1.284 14 N -0.592 5.592 15 C 0.067 3.933 16 C 0.537 3.463 17 O -0.544 6.544 18 C -0.053 4.053 19 C -0.148 4.148 20 C -0.171 4.171 21 C -0.122 4.122 22 C -0.102 4.102 23 C -0.106 4.106 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.020 0.980 28 H 0.026 0.974 29 H 0.387 0.613 30 H 0.253 0.747 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 -2.188 11.236 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.116 0.884 4 C 0.015 3.985 5 N -0.371 5.371 6 C -0.372 4.372 7 H 0.085 0.915 8 C -0.207 4.207 9 N -0.571 5.571 10 Si 0.734 3.266 11 H -0.219 1.219 12 H -0.219 1.219 13 H -0.209 1.209 14 N -0.323 5.323 15 C -0.076 4.076 16 C 0.325 3.675 17 O -0.421 6.421 18 C -0.056 4.056 19 C -0.205 4.205 20 C -0.189 4.189 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.144 4.144 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.221 0.779 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.852 -1.639 11.005 14.219 hybrid contribution 0.777 -0.568 -0.851 1.285 sum -8.075 -2.207 10.154 13.160 Atomic orbital electron populations 1.22036 0.95355 1.01918 1.01882 1.21365 0.93207 0.98439 0.84841 0.88430 1.20993 0.87214 0.96686 0.93632 1.42284 0.99609 1.70092 1.25091 1.19187 0.89439 1.29484 0.99081 0.91466 1.24714 0.96392 1.01725 0.97908 1.69698 1.06905 1.50638 1.29893 0.86261 0.79553 0.79013 0.81749 1.21865 1.21900 1.20944 1.47519 1.50547 1.12036 1.22248 1.22155 0.99923 0.82650 1.02877 1.20271 0.77200 0.86931 0.83116 1.90627 1.60307 1.15724 1.75422 1.20517 0.96109 0.95187 0.93765 1.22095 0.97719 1.01101 0.99561 1.22859 0.94211 0.98396 1.03403 1.23263 0.97552 0.96168 0.97060 1.21400 0.96875 0.95761 0.99833 1.22441 0.94045 1.00214 0.97659 0.91589 0.92492 0.92748 0.96274 0.95613 0.77857 0.93744 0.93472 0.90901 0.89538 0.92509 0.91009 0.91662 0.85354 0.85661 0.89789 0.91572 0.89506 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.19 37.16 0.34 -1.74 16 2 C 0.12 2.24 2.80 -67.93 -0.19 2.05 16 3 H 0.10 2.01 6.91 -51.93 -0.36 1.65 16 4 C 0.14 2.98 5.48 -4.04 -0.02 2.95 16 5 N -0.73 -18.97 5.43 -59.91 -0.33 -19.29 16 6 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 9 N -0.92 -27.99 13.06 55.49 0.72 -27.27 16 10 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 N -0.59 -10.24 2.24 -173.93 -0.39 -10.63 16 15 C 0.07 0.94 7.75 59.84 0.46 1.41 16 16 C 0.54 10.12 6.23 -10.98 -0.07 10.05 16 17 O -0.54 -12.10 14.79 5.56 0.08 -12.02 16 18 C -0.05 -0.82 0.56 -155.76 -0.09 -0.90 16 19 C -0.15 -1.74 8.15 37.16 0.30 -1.44 16 20 C -0.17 -2.80 8.19 -35.70 -0.29 -3.09 16 21 C -0.12 -2.10 10.78 -35.67 -0.38 -2.48 16 22 C -0.10 -1.65 6.81 -26.79 -0.18 -1.83 16 23 C -0.11 -1.59 6.05 -25.01 -0.15 -1.74 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 26 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.02 0.39 6.92 -51.93 -0.36 0.03 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.39 10.96 7.06 -40.82 -0.29 10.67 16 30 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.05 0.53 7.51 -51.93 -0.39 0.14 16 32 H 0.07 1.10 6.56 -51.93 -0.34 0.76 16 33 H 0.09 1.17 3.02 -51.93 -0.16 1.01 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.78 4.52 -51.93 -0.23 0.54 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.13 2.01 6.37 -52.48 -0.33 1.67 16 38 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.42 6.91 -51.93 -0.36 1.06 16 42 H 0.07 0.87 7.91 -51.93 -0.41 0.46 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -32.68 326.43 -7.09 -39.77 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.56 Total: 11.04 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.52 Total: -4.16 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.01 Total: -57.19 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.68 -7.09 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319511831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.487 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds