Wall clock time and date at job start Mon Mar 30 2020 19:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47603 * 2 1 4 4 C 1.53000 * 109.46958 * 240.00036 * 2 1 3 5 5 N 1.46499 * 109.47066 * 185.00376 * 4 2 1 6 6 C 1.36937 * 119.99735 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00233 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00036 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99880 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00400 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47288 * 90.00066 * 10 8 6 12 12 H 1.48504 * 109.47415 * 210.00123 * 10 8 6 13 13 H 1.48504 * 109.46981 * 330.00107 * 10 8 6 14 14 N 1.46502 * 109.46932 * 120.00305 * 2 1 3 15 15 C 1.46493 * 120.00171 * 59.99938 * 14 2 1 16 16 C 1.34778 * 119.99599 * 239.99549 * 14 2 1 17 17 O 1.21282 * 120.00082 * 5.27149 * 16 14 2 18 18 C 1.50703 * 119.99763 * 185.27083 * 16 14 2 19 19 C 1.52997 * 110.43402 * 299.23112 * 18 16 14 20 20 C 1.51099 * 110.38796 * 61.58210 * 18 16 14 21 21 C 1.30525 * 111.10680 * 102.37317 * 20 18 16 22 22 C 1.51165 * 111.11606 * 0.03326 * 21 20 18 23 23 C 1.54636 * 110.38568 * 176.88711 * 18 16 14 24 24 H 1.08997 * 109.47186 * 59.99606 * 1 2 3 25 25 H 1.08998 * 109.47165 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46794 * 300.00088 * 1 2 3 27 27 H 1.09003 * 109.47096 * 304.99840 * 4 2 1 28 28 H 1.09003 * 109.47052 * 65.00107 * 4 2 1 29 29 H 0.96997 * 120.00158 * 359.97438 * 5 4 2 30 30 H 0.96999 * 120.00418 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.47141 * 275.22948 * 15 14 2 32 32 H 1.08997 * 109.47463 * 35.23376 * 15 14 2 33 33 H 1.09005 * 109.47104 * 155.23715 * 15 14 2 34 34 H 1.09001 * 109.47510 * 297.65139 * 19 18 16 35 35 H 1.09004 * 109.47469 * 57.65250 * 19 18 16 36 36 H 1.09003 * 109.47436 * 177.65220 * 19 18 16 37 37 H 1.08006 * 124.44568 * 282.39393 * 20 18 16 38 38 H 1.07998 * 124.45158 * 180.02562 * 21 20 18 39 39 H 1.09001 * 110.38347 * 257.58661 * 22 21 20 40 40 H 1.09002 * 110.42395 * 135.19362 * 22 21 20 41 41 H 1.08996 * 111.03650 * 23.85022 * 23 18 16 42 42 H 1.09002 * 111.03675 * 147.75102 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.1837 -1.4380 -2.2072 7 1 3.6467 -1.8431 -3.0521 8 6 5.5672 -1.5373 -2.1520 9 7 6.2219 -1.0431 -1.1225 10 14 6.5000 -2.3721 -3.5384 11 1 6.8618 -1.3653 -4.5682 12 1 7.7357 -2.9947 -2.9992 13 1 5.6440 -3.4202 -4.1501 14 7 2.0183 -0.6907 1.1962 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0833 17 8 3.0077 1.1496 1.9421 18 6 3.3931 -0.7762 3.2507 19 6 2.2908 -1.3653 4.1331 20 6 4.3168 -1.8681 2.7630 21 6 5.5672 -1.5105 2.8744 22 6 5.6863 -0.1203 3.4559 23 6 4.2994 0.1652 4.0775 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.6053 -1.7198 -1.2951 28 1 1.7516 -0.1583 -2.1370 29 1 3.9824 -0.4623 -0.4319 30 1 7.1886 -1.1128 -1.0836 31 1 0.6919 -2.1464 1.9174 32 1 1.6205 -2.6193 0.4743 33 1 2.4174 -2.5575 2.0648 34 1 1.6839 -0.5583 4.5437 35 1 1.6615 -2.0256 3.5363 36 1 2.7414 -1.9317 4.9481 37 1 3.9858 -2.8193 2.3731 38 1 6.4067 -2.1270 2.5887 39 1 5.9063 0.6024 2.6701 40 1 6.4593 -0.0943 4.2241 41 1 4.0140 1.2075 3.9354 42 1 4.2815 -0.1026 5.1340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319511831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:26 Heat of formation + Delta-G solvation = -13.907108 kcal Electronic energy + Delta-G solvation = -22007.529273 eV Core-core repulsion = 18987.941198 eV Total energy + Delta-G solvation = -3019.588075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.84632 -39.01970 -37.60912 -35.86465 -33.87183 -32.33948 -31.33031 -29.78431 -27.93953 -27.38009 -25.81342 -24.60434 -23.64650 -21.21602 -20.32441 -19.82296 -19.07765 -17.66994 -17.47141 -16.74029 -16.37315 -16.17676 -15.55600 -15.17802 -15.09622 -14.70363 -14.37064 -13.95062 -13.70611 -13.68370 -13.29593 -13.25844 -13.08172 -12.91485 -12.80574 -12.68916 -12.50182 -12.41712 -12.14393 -12.11157 -11.88993 -11.81207 -11.72160 -11.46563 -10.96720 -10.84353 -9.72122 -9.50460 -8.96694 -7.89546 -5.19855 1.26527 1.44574 1.46632 1.54545 1.82904 2.16442 2.55576 3.41426 3.54505 3.59824 3.74982 3.93464 4.09963 4.14035 4.21951 4.30262 4.40006 4.48365 4.53513 4.61446 4.71855 4.75757 4.82129 4.84499 4.86810 4.92026 4.93419 5.00268 5.09422 5.15224 5.17247 5.26635 5.30890 5.40192 5.49419 5.64033 5.72792 5.98302 6.28110 6.53150 7.28201 7.35401 8.11275 8.35804 9.31727 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.008062 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.830706 B = 3472.351352 C = 4533.771142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.128 3.872 3 H 0.062 0.938 4 C 0.142 3.858 5 N -0.739 5.739 6 C -0.247 4.247 7 H 0.075 0.925 8 C -0.070 4.070 9 N -0.956 5.956 10 Si 0.970 3.030 11 H -0.293 1.293 12 H -0.296 1.296 13 H -0.268 1.268 14 N -0.592 5.592 15 C 0.062 3.938 16 C 0.523 3.477 17 O -0.591 6.591 18 C -0.051 4.051 19 C -0.141 4.141 20 C -0.165 4.165 21 C -0.146 4.146 22 C -0.101 4.101 23 C -0.102 4.102 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.026 0.974 29 H 0.372 0.628 30 H 0.247 0.753 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.042 0.958 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 -3.974 11.865 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.080 0.920 4 C 0.014 3.986 5 N -0.382 5.382 6 C -0.379 4.379 7 H 0.092 0.908 8 C -0.263 4.263 9 N -0.606 5.606 10 Si 0.799 3.201 11 H -0.220 1.220 12 H -0.223 1.223 13 H -0.193 1.193 14 N -0.322 5.322 15 C -0.080 4.080 16 C 0.313 3.687 17 O -0.472 6.472 18 C -0.054 4.054 19 C -0.198 4.198 20 C -0.183 4.183 21 C -0.165 4.165 22 C -0.138 4.138 23 C -0.139 4.139 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.204 0.796 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.154 0.846 38 H 0.137 0.863 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.809 -3.464 11.613 16.239 hybrid contribution 1.329 0.007 -1.104 1.728 sum -9.480 -3.457 10.509 14.569 Atomic orbital electron populations 1.21939 0.91346 1.03605 1.02959 1.21253 0.96125 0.96147 0.84093 0.91991 1.21188 0.84407 0.97785 0.95177 1.42474 1.01788 1.69841 1.24108 1.19583 0.89974 1.28801 0.99567 0.90751 1.25517 0.97397 1.03025 1.00344 1.69878 1.06639 1.52271 1.31847 0.85203 0.78035 0.78103 0.78732 1.22031 1.22261 1.19299 1.47660 1.49924 1.13235 1.21418 1.22393 1.02159 0.80476 1.02966 1.20978 0.76901 0.86721 0.84117 1.90600 1.61930 1.17924 1.76718 1.20581 0.97088 0.94567 0.93152 1.22095 0.96608 1.01552 0.99545 1.23065 0.94125 0.98814 1.02289 1.23396 0.98026 0.96711 0.98318 1.21366 0.98857 0.94189 0.99379 1.22461 0.92800 0.99182 0.99485 0.90380 0.90382 0.91895 0.94534 0.95593 0.79599 0.94380 0.89514 0.91788 0.88984 0.91850 0.89719 0.89410 0.84555 0.86261 0.93963 0.89013 0.91434 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.19 71.98 0.66 -2.78 16 2 C 0.13 4.52 2.80 44.99 0.13 4.65 16 3 H 0.06 2.65 6.91 -2.39 -0.02 2.63 16 4 C 0.14 5.80 5.48 86.38 0.47 6.27 16 5 N -0.74 -39.10 5.43 -343.44 -1.87 -40.96 16 6 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 7 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 8 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 9 N -0.96 -59.53 13.06 21.65 0.28 -59.25 16 10 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 N -0.59 -19.94 2.24 -822.59 -1.85 -21.78 16 15 C 0.06 1.57 7.75 127.77 0.99 2.56 16 16 C 0.52 19.83 6.23 87.66 0.55 20.37 16 17 O -0.59 -27.47 14.79 -3.04 -0.04 -27.51 16 18 C -0.05 -1.52 0.56 -52.99 -0.03 -1.55 16 19 C -0.14 -2.86 8.15 71.98 0.59 -2.27 16 20 C -0.17 -5.31 8.19 26.26 0.21 -5.09 16 21 C -0.15 -5.11 10.78 26.28 0.28 -4.83 16 22 C -0.10 -3.36 6.81 30.55 0.21 -3.15 16 23 C -0.10 -2.99 6.05 31.71 0.19 -2.80 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.08 1.61 7.67 -2.39 -0.02 1.59 16 26 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.04 1.40 6.92 -2.39 -0.02 1.38 16 28 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.37 21.75 7.06 -92.71 -0.65 21.10 16 30 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.09 1.57 7.51 -2.39 -0.02 1.55 16 32 H 0.06 1.77 6.56 -2.39 -0.02 1.75 16 33 H 0.09 2.25 3.02 -2.38 -0.01 2.25 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.49 4.52 -2.38 -0.01 1.48 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.14 4.09 6.37 -2.91 -0.02 4.07 16 38 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.07 2.27 6.91 -2.39 -0.02 2.25 16 42 H 0.11 2.35 7.91 -2.39 -0.02 2.33 16 Total: -1.00 -73.22 326.43 4.47 -68.76 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: 0.36 Total: 37.28 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 5.56 Total: -5.48 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -3.43 Total: -121.99 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.04 Total: -27.51 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -73.22 4.47 -68.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319511831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.848 kcal (2) G-P(sol) polarization free energy of solvation -73.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds