Wall clock time and date at job start Mon Mar 30 2020 19:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.52999 * 109.46626 * 174.99857 * 4 2 1 6 6 N 1.46506 * 109.46691 * 179.97438 * 5 4 2 7 7 C 1.36938 * 119.99597 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00321 * 0.02562 * 7 6 5 9 9 C 1.38815 * 119.99825 * 180.02562 * 7 6 5 10 10 N 1.31624 * 120.00262 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99923 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47174 * 89.99720 * 11 9 7 13 13 H 1.48504 * 109.46913 * 209.99970 * 11 9 7 14 14 H 1.48501 * 109.47062 * 329.99769 * 11 9 7 15 15 N 1.46495 * 109.47194 * 120.00216 * 2 1 3 16 16 C 1.34771 * 120.00262 * 274.99551 * 15 2 1 17 17 O 1.21285 * 119.99976 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00221 * 179.97438 * 16 15 2 19 19 C 1.52992 * 110.91486 * 56.03466 * 18 16 15 20 20 C 1.54632 * 111.03549 * 292.02345 * 18 16 15 21 21 C 1.51104 * 104.72806 * 266.60039 * 20 18 16 22 22 C 1.30529 * 111.10336 * 343.56504 * 21 20 18 23 23 C 1.51099 * 111.10275 * 0.02562 * 22 21 20 24 24 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 26 26 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 27 27 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 28 28 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 30 30 H 1.09000 * 109.47160 * 60.00369 * 5 4 2 31 31 H 0.96999 * 120.00076 * 0.02562 * 6 5 4 32 32 H 0.97000 * 119.99891 * 179.97438 * 10 9 7 33 33 H 0.97007 * 119.99853 * 94.99634 * 15 2 1 34 34 H 1.09007 * 109.46883 * 60.70089 * 19 18 16 35 35 H 1.09002 * 109.47448 * 180.69676 * 19 18 16 36 36 H 1.08994 * 109.47350 * 300.70357 * 19 18 16 37 37 H 1.09003 * 110.38812 * 25.41209 * 20 18 16 38 38 H 1.08999 * 110.38527 * 147.79191 * 20 18 16 39 39 H 1.08002 * 124.45034 * 163.58221 * 21 20 18 40 40 H 1.08000 * 124.44780 * 180.02562 * 22 21 20 41 41 H 1.09003 * 110.38424 * 257.61968 * 23 22 21 42 42 H 1.08996 * 110.48563 * 135.29558 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 7 4.0530 -1.3045 -2.5097 7 6 5.3950 -1.3404 -2.7796 8 1 6.0935 -0.8597 -2.1108 9 6 5.8577 -1.9949 -3.9131 10 7 7.1477 -2.0299 -4.1723 11 14 4.6495 -2.8258 -5.0704 12 1 4.2144 -1.8584 -6.1096 13 1 5.3063 -3.9884 -5.7202 14 1 3.4675 -3.2911 -4.3013 15 7 2.0183 -0.6906 1.1961 16 6 2.1471 -0.0184 2.3570 17 8 1.8583 1.1583 2.4117 18 6 2.6489 -0.7290 3.5876 19 6 4.0096 -1.3780 3.3268 20 6 1.6213 -1.7724 4.0839 21 6 0.7944 -1.0376 5.1133 22 6 1.3912 0.0564 5.5017 23 6 2.7152 0.2339 4.7956 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 1.7514 -1.7715 -1.2057 28 1 1.6052 -0.2617 -2.1370 29 1 3.8531 0.4369 -1.3575 30 1 3.9993 -1.0729 -0.4261 31 1 3.4256 -1.7359 -3.1107 32 1 7.4710 -2.4875 -4.9641 33 1 2.2490 -1.6319 1.1525 34 1 4.7339 -0.6086 3.0593 35 1 4.3441 -1.8948 4.2264 36 1 3.9204 -2.0930 2.5090 37 1 0.9915 -2.1070 3.2596 38 1 2.1315 -2.6200 4.5415 39 1 -0.1644 -1.3736 5.4799 40 1 0.9912 0.7443 6.2319 41 1 3.5375 -0.0421 5.4558 42 1 2.8313 1.2629 4.4556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320543521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:38 Heat of formation + Delta-G solvation = -20.978844 kcal Electronic energy + Delta-G solvation = -20599.300041 eV Core-core repulsion = 17579.405313 eV Total energy + Delta-G solvation = -3019.894729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67726 -38.09202 -36.38323 -34.50425 -32.57395 -31.56325 -30.48367 -28.34576 -28.27308 -25.74445 -24.14102 -23.00197 -21.34220 -20.69799 -19.46325 -19.04510 -17.61726 -16.99403 -16.35985 -15.65987 -15.06040 -14.49608 -14.44836 -14.11143 -13.80534 -13.33906 -13.18244 -13.13066 -12.85913 -12.62738 -12.45190 -12.35704 -12.28225 -11.98340 -11.53385 -11.42124 -11.35122 -11.23859 -10.89108 -10.82358 -10.73602 -10.50939 -10.15792 -9.68519 -9.60505 -9.09226 -8.98618 -8.88250 -7.24701 -5.77929 -3.13742 2.10042 2.69528 3.19755 3.35394 3.38374 3.43727 4.23781 4.42238 4.57549 4.58605 4.77975 4.93831 5.05277 5.16047 5.24826 5.27065 5.41519 5.47898 5.49276 5.55405 5.62231 5.63447 5.64775 5.72524 5.80236 5.82087 5.92199 5.94930 5.96182 6.05600 6.15850 6.23419 6.34837 6.54238 6.70352 6.70642 6.76324 7.57692 7.98445 8.29772 8.41014 9.20089 9.92336 10.12163 11.40538 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.004121 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.886660 B = 6793.523139 C = 7272.943286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.089 0.911 4 C -0.139 4.139 5 C 0.158 3.842 6 N -0.757 5.757 7 C -0.245 4.245 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.718 5.718 16 C 0.532 3.468 17 O -0.540 6.540 18 C -0.089 4.089 19 C -0.137 4.137 20 C -0.086 4.086 21 C -0.179 4.179 22 C -0.151 4.151 23 C -0.086 4.086 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 0.286 17.817 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.177 4.177 5 C 0.031 3.969 6 N -0.403 5.403 7 C -0.375 4.375 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.369 5.369 16 C 0.318 3.682 17 O -0.416 6.416 18 C -0.092 4.092 19 C -0.195 4.195 20 C -0.123 4.123 21 C -0.197 4.197 22 C -0.169 4.169 23 C -0.123 4.123 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.235 0.765 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.100 0.900 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.075 1.180 17.848 22.761 hybrid contribution -0.705 -1.125 -0.968 1.643 sum -14.780 0.055 16.880 22.437 Atomic orbital electron populations 1.22156 0.95512 1.01897 1.02310 1.20940 0.93520 0.97771 0.83726 0.89263 1.22115 0.98083 1.00775 0.96758 1.20611 0.90154 0.95986 0.90142 1.42724 1.05322 1.66083 1.26176 1.19065 0.82244 1.29362 1.06795 0.89289 1.24685 0.95608 1.00682 0.98224 1.69708 1.11734 1.48233 1.28566 0.86525 0.80847 0.79454 0.81537 1.21070 1.21721 1.20387 1.46078 1.67137 1.14187 1.09532 1.20179 0.76944 0.86976 0.84120 1.90661 1.50071 1.16015 1.84898 1.21637 0.97093 0.96761 0.93741 1.21800 0.94119 1.00943 1.02623 1.21427 0.95773 0.97261 0.97827 1.23187 0.99576 0.97283 0.99625 1.23250 0.96497 0.97485 0.99698 1.21365 0.96135 1.00773 0.93994 0.92630 0.92355 0.91621 0.91465 0.90332 0.95565 0.95540 0.80723 0.93051 0.76476 0.91473 0.91309 0.91534 0.90879 0.89553 0.85886 0.85863 0.89999 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 37.16 0.35 -1.46 16 2 C 0.15 1.89 2.57 -67.93 -0.17 1.72 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 4 C -0.14 -1.99 4.87 -26.73 -0.13 -2.12 16 5 C 0.16 3.01 6.15 -4.04 -0.02 2.98 16 6 N -0.76 -17.93 5.41 -59.91 -0.32 -18.26 16 7 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 10 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 11 Si 0.89 22.00 27.74 -169.99 -4.71 17.28 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 15 N -0.72 -8.77 4.36 -53.81 -0.23 -9.00 16 16 C 0.53 7.12 6.48 -10.99 -0.07 7.04 16 17 O -0.54 -9.08 15.19 5.55 0.08 -9.00 16 18 C -0.09 -0.94 0.84 -153.95 -0.13 -1.07 16 19 C -0.14 -1.31 8.36 37.15 0.31 -1.00 16 20 C -0.09 -0.76 5.93 -26.83 -0.16 -0.92 16 21 C -0.18 -1.65 10.78 -35.70 -0.38 -2.04 16 22 C -0.15 -1.48 10.78 -35.70 -0.38 -1.87 16 23 C -0.09 -0.89 5.72 -26.84 -0.15 -1.05 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 31 H 0.36 8.24 5.53 -40.82 -0.23 8.01 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.40 4.26 7.88 -40.82 -0.32 3.94 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 36 H 0.07 0.62 7.46 -51.93 -0.39 0.23 16 37 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 38 H 0.09 0.65 7.88 -51.93 -0.41 0.24 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.08 0.72 7.89 -51.93 -0.41 0.31 16 42 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -33.38 339.74 -7.64 -41.01 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.14 Total: 8.41 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.20 Total: -6.90 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.22 Total: -55.93 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.38 -7.64 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320543521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.033 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds