Wall clock time and date at job start Mon Mar 30 2020 19:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.52999 * 109.46626 * 174.99857 * 4 2 1 6 6 N 1.46506 * 109.46691 * 179.97438 * 5 4 2 7 7 C 1.36938 * 119.99597 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00321 * 0.02562 * 7 6 5 9 9 C 1.38815 * 119.99825 * 180.02562 * 7 6 5 10 10 N 1.31624 * 120.00262 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99923 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47174 * 89.99720 * 11 9 7 13 13 H 1.48504 * 109.46913 * 209.99970 * 11 9 7 14 14 H 1.48501 * 109.47062 * 329.99769 * 11 9 7 15 15 N 1.46495 * 109.47194 * 120.00216 * 2 1 3 16 16 C 1.34771 * 120.00262 * 274.99551 * 15 2 1 17 17 O 1.21285 * 119.99976 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00221 * 179.97438 * 16 15 2 19 19 C 1.52992 * 110.91486 * 56.03466 * 18 16 15 20 20 C 1.54632 * 111.03549 * 292.02345 * 18 16 15 21 21 C 1.51104 * 104.72806 * 266.60039 * 20 18 16 22 22 C 1.30529 * 111.10336 * 343.56504 * 21 20 18 23 23 C 1.51099 * 111.10275 * 0.02562 * 22 21 20 24 24 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 26 26 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 27 27 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 28 28 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 30 30 H 1.09000 * 109.47160 * 60.00369 * 5 4 2 31 31 H 0.96999 * 120.00076 * 0.02562 * 6 5 4 32 32 H 0.97000 * 119.99891 * 179.97438 * 10 9 7 33 33 H 0.97007 * 119.99853 * 94.99634 * 15 2 1 34 34 H 1.09007 * 109.46883 * 60.70089 * 19 18 16 35 35 H 1.09002 * 109.47448 * 180.69676 * 19 18 16 36 36 H 1.08994 * 109.47350 * 300.70357 * 19 18 16 37 37 H 1.09003 * 110.38812 * 25.41209 * 20 18 16 38 38 H 1.08999 * 110.38527 * 147.79191 * 20 18 16 39 39 H 1.08002 * 124.45034 * 163.58221 * 21 20 18 40 40 H 1.08000 * 124.44780 * 180.02562 * 22 21 20 41 41 H 1.09003 * 110.38424 * 257.61968 * 23 22 21 42 42 H 1.08996 * 110.48563 * 135.29558 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 7 4.0530 -1.3045 -2.5097 7 6 5.3950 -1.3404 -2.7796 8 1 6.0935 -0.8597 -2.1108 9 6 5.8577 -1.9949 -3.9131 10 7 7.1477 -2.0299 -4.1723 11 14 4.6495 -2.8258 -5.0704 12 1 4.2144 -1.8584 -6.1096 13 1 5.3063 -3.9884 -5.7202 14 1 3.4675 -3.2911 -4.3013 15 7 2.0183 -0.6906 1.1961 16 6 2.1471 -0.0184 2.3570 17 8 1.8583 1.1583 2.4117 18 6 2.6489 -0.7290 3.5876 19 6 4.0096 -1.3780 3.3268 20 6 1.6213 -1.7724 4.0839 21 6 0.7944 -1.0376 5.1133 22 6 1.3912 0.0564 5.5017 23 6 2.7152 0.2339 4.7956 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 1.7514 -1.7715 -1.2057 28 1 1.6052 -0.2617 -2.1370 29 1 3.8531 0.4369 -1.3575 30 1 3.9993 -1.0729 -0.4261 31 1 3.4256 -1.7359 -3.1107 32 1 7.4710 -2.4875 -4.9641 33 1 2.2490 -1.6319 1.1525 34 1 4.7339 -0.6086 3.0593 35 1 4.3441 -1.8948 4.2264 36 1 3.9204 -2.0930 2.5090 37 1 0.9915 -2.1070 3.2596 38 1 2.1315 -2.6200 4.5415 39 1 -0.1644 -1.3736 5.4799 40 1 0.9912 0.7443 6.2319 41 1 3.5375 -0.0421 5.4558 42 1 2.8313 1.2629 4.4556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320543521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:38 Heat of formation + Delta-G solvation = -43.071069 kcal Electronic energy + Delta-G solvation = -20600.258032 eV Core-core repulsion = 17579.405313 eV Total energy + Delta-G solvation = -3020.852719 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63232 -39.04273 -37.68732 -36.18228 -33.88267 -33.14410 -31.63674 -29.72068 -29.09025 -26.52780 -25.74797 -24.18239 -23.04188 -21.81400 -20.46676 -19.79557 -19.61932 -17.93330 -17.43767 -16.65013 -16.45541 -16.03845 -15.76300 -15.46092 -15.18235 -14.80937 -14.36218 -14.07509 -13.99991 -13.67714 -13.64185 -13.32788 -13.16027 -13.04336 -12.97311 -12.88375 -12.42988 -12.23089 -12.15485 -12.07151 -11.99047 -11.84416 -11.74799 -11.61806 -10.99166 -10.74038 -10.07901 -9.77730 -9.31646 -8.03452 -5.38307 1.38645 1.38750 1.43606 1.50978 1.66274 2.21656 2.48947 3.27930 3.43443 3.44792 3.65081 3.76383 4.01059 4.06899 4.13083 4.25715 4.35214 4.48203 4.53318 4.61181 4.68265 4.74410 4.77171 4.82732 4.84775 4.91552 4.95866 5.03023 5.05402 5.15107 5.20213 5.22985 5.27929 5.31779 5.58056 5.64692 5.73810 5.99874 6.20073 6.58444 7.07118 7.28200 7.81693 8.03081 9.18174 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.004121 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.886660 B = 6793.523139 C = 7272.943286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.064 0.936 4 C -0.123 4.123 5 C 0.156 3.844 6 N -0.757 5.757 7 C -0.241 4.241 8 H 0.050 0.950 9 C -0.065 4.065 10 N -0.985 5.985 11 Si 0.961 3.039 12 H -0.279 1.279 13 H -0.295 1.295 14 H -0.244 1.244 15 N -0.712 5.712 16 C 0.527 3.473 17 O -0.581 6.581 18 C -0.088 4.088 19 C -0.135 4.135 20 C -0.083 4.083 21 C -0.177 4.177 22 C -0.170 4.170 23 C -0.088 4.088 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.008 0.992 30 H 0.027 0.973 31 H 0.369 0.631 32 H 0.259 0.741 33 H 0.410 0.590 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.746 -1.640 18.000 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.044 3.956 3 H 0.082 0.918 4 C -0.161 4.161 5 C 0.030 3.970 6 N -0.403 5.403 7 C -0.372 4.372 8 H 0.068 0.932 9 C -0.256 4.256 10 N -0.635 5.635 11 Si 0.787 3.213 12 H -0.205 1.205 13 H -0.222 1.222 14 H -0.168 1.168 15 N -0.363 5.363 16 C 0.314 3.686 17 O -0.461 6.461 18 C -0.091 4.091 19 C -0.193 4.193 20 C -0.120 4.120 21 C -0.194 4.194 22 C -0.188 4.188 23 C -0.125 4.125 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.026 0.974 30 H 0.045 0.955 31 H 0.202 0.798 32 H 0.067 0.933 33 H 0.247 0.753 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.115 0.885 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.732 -0.756 18.061 24.632 hybrid contribution 0.190 -0.438 -0.955 1.068 sum -16.542 -1.194 17.105 23.825 Atomic orbital electron populations 1.22062 0.93519 1.03046 1.02290 1.20832 0.94925 0.96366 0.83516 0.91764 1.21971 0.94062 1.02308 0.97728 1.20743 0.93664 0.94272 0.88370 1.42678 1.03511 1.66463 1.27676 1.19017 0.83994 1.28213 1.05972 0.93208 1.25596 0.97655 1.01991 1.00369 1.69906 1.14383 1.49797 1.29457 0.85325 0.79103 0.77878 0.78948 1.20515 1.22192 1.16832 1.46052 1.66611 1.14585 1.09081 1.20739 0.76191 0.86603 0.85073 1.90642 1.51934 1.17869 1.85607 1.21654 0.97994 0.97151 0.92296 1.21811 0.93135 1.00506 1.03831 1.21476 0.95364 0.97138 0.97999 1.23440 1.00036 0.96897 0.99068 1.23371 0.96460 0.98381 1.00560 1.21380 0.97442 0.99297 0.94390 0.90814 0.93635 0.90430 0.89439 0.89320 0.97374 0.95487 0.79775 0.93253 0.75299 0.93259 0.89093 0.91187 0.90318 0.87442 0.84169 0.85028 0.88502 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.48 71.98 0.68 -2.36 16 2 C 0.15 3.66 2.57 44.99 0.12 3.78 16 3 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 4 C -0.12 -3.19 4.87 30.60 0.15 -3.04 16 5 C 0.16 5.79 6.15 86.38 0.53 6.32 16 6 N -0.76 -34.83 5.41 -343.45 -1.86 -36.69 16 7 C -0.24 -13.88 10.47 84.03 0.88 -13.00 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 9 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 10 N -0.99 -63.37 13.97 21.65 0.30 -63.07 16 11 Si 0.96 44.52 27.74 68.60 1.90 46.43 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 14 H -0.24 -9.87 6.52 99.48 0.65 -9.22 16 15 N -0.71 -16.46 4.36 -442.54 -1.93 -18.39 16 16 C 0.53 13.92 6.48 87.66 0.57 14.49 16 17 O -0.58 -20.05 15.19 -3.05 -0.05 -20.10 16 18 C -0.09 -1.76 0.84 -51.82 -0.04 -1.80 16 19 C -0.14 -2.42 8.36 71.98 0.60 -1.82 16 20 C -0.08 -1.26 5.93 30.53 0.18 -1.08 16 21 C -0.18 -2.88 10.78 26.26 0.28 -2.60 16 22 C -0.17 -3.15 10.78 26.26 0.28 -2.87 16 23 C -0.09 -1.81 5.72 30.53 0.17 -1.64 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.03 1.01 7.75 -2.39 -0.02 0.99 16 31 H 0.37 15.70 5.53 -92.71 -0.51 15.18 16 32 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.41 7.83 7.88 -92.70 -0.73 7.10 16 34 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.09 1.22 8.12 -2.39 -0.02 1.20 16 36 H 0.07 1.19 7.46 -2.39 -0.02 1.17 16 37 H 0.08 1.13 7.85 -2.39 -0.02 1.12 16 38 H 0.11 1.22 7.88 -2.39 -0.02 1.21 16 39 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.10 1.62 7.89 -2.39 -0.02 1.61 16 42 H 0.06 1.60 7.01 -2.39 -0.02 1.59 16 Total: -1.00 -73.85 339.74 2.94 -70.92 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.30 Total: 29.87 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.87 Total: -8.97 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -3.49 Total: -118.15 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.10 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.43 kcal Total: -73.85 2.94 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320543521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.845 kcal (2) G-P(sol) polarization free energy of solvation -73.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds