Wall clock time and date at job start Mon Mar 30 2020 19:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47130 * 2 1 4 4 C 1.53004 * 109.47216 * 240.00005 * 2 1 3 5 5 N 1.46502 * 109.46806 * 185.00134 * 4 2 1 6 6 C 1.36938 * 119.99627 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00150 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99836 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99890 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00249 * 0.02562 * 8 6 5 11 11 H 1.48507 * 109.46881 * 89.99672 * 10 8 6 12 12 H 1.48495 * 109.47289 * 209.99939 * 10 8 6 13 13 H 1.48504 * 109.47011 * 330.00110 * 10 8 6 14 14 N 1.46503 * 109.47150 * 119.99995 * 2 1 3 15 15 C 1.34776 * 120.00143 * 275.00331 * 14 2 1 16 16 O 1.21280 * 119.99962 * 359.97438 * 15 14 2 17 17 C 1.50700 * 120.00274 * 180.02562 * 15 14 2 18 18 C 1.51846 * 108.65080 * 179.97438 * 17 15 14 19 19 C 1.53027 * 110.71427 * 172.37712 * 18 17 15 20 20 C 1.51370 * 108.62263 * 85.75620 * 19 18 17 21 21 C 1.29519 * 120.35874 * 288.10440 * 20 19 18 22 22 C 1.51374 * 120.36032 * 359.97438 * 21 20 19 23 23 C 1.51860 * 108.61780 * 55.93348 * 17 15 14 24 24 H 1.08999 * 109.47217 * 299.99939 * 1 2 3 25 25 H 1.09007 * 109.46848 * 60.00256 * 1 2 3 26 26 H 1.09002 * 109.47180 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47031 * 304.99893 * 4 2 1 28 28 H 1.08994 * 109.46895 * 65.00406 * 4 2 1 29 29 H 0.97001 * 120.00505 * 359.97438 * 5 4 2 30 30 H 0.97007 * 119.99789 * 179.97438 * 9 8 6 31 31 H 0.97006 * 120.00119 * 95.00166 * 14 2 1 32 32 H 1.08999 * 108.48612 * 297.95113 * 17 15 14 33 33 H 1.09002 * 109.22356 * 52.06835 * 18 17 15 34 34 H 1.09006 * 109.22051 * 292.67843 * 18 17 15 35 35 H 1.09005 * 109.60906 * 205.49425 * 19 18 17 36 36 H 1.09004 * 109.61586 * 326.01447 * 19 18 17 37 37 H 1.07997 * 119.82366 * 108.07112 * 20 19 18 38 38 H 1.08004 * 119.82012 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.61219 * 191.64375 * 22 21 20 40 40 H 1.09003 * 109.61489 * 312.16301 * 22 21 20 41 41 H 1.08997 * 109.25443 * 67.31378 * 23 17 15 42 42 H 1.09003 * 109.19061 * 307.92992 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1905 6 6 4.1839 -1.4379 -2.2071 7 1 3.6469 -1.8423 -3.0524 8 6 5.5674 -1.5371 -2.1517 9 7 6.2246 -2.1253 -3.1286 10 14 6.4962 -0.8369 -0.6900 11 1 6.6277 -1.8802 0.3586 12 1 7.8469 -0.3994 -1.1253 13 1 5.7523 0.3254 -0.1414 14 7 2.0183 -0.6906 1.1962 15 6 2.1470 -0.0183 2.3572 16 8 1.8589 1.1585 2.4116 17 6 2.6499 -0.7285 3.5875 18 6 2.6939 0.2630 4.7367 19 6 3.0171 -0.4478 6.0528 20 6 4.5208 -0.5588 6.1857 21 6 5.1850 -1.3821 5.4383 22 6 4.4659 -2.2442 4.4229 23 6 3.9976 -1.3523 3.2704 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6054 -1.7197 -1.2952 28 1 1.7517 -0.1583 -2.1369 29 1 3.9825 -0.4622 -0.4318 30 1 7.1915 -2.1942 -3.0901 31 1 2.2490 -1.6318 1.1526 32 1 1.9476 -1.5233 3.8391 33 1 1.7253 0.7554 4.8232 34 1 3.4603 1.0116 4.5356 35 1 2.6176 0.1284 6.8874 36 1 2.5756 -1.4444 6.0484 37 1 5.0428 0.0522 6.9071 38 1 6.2579 -1.4539 5.5401 39 1 5.1461 -3.0064 4.0428 40 1 3.6044 -2.7200 4.8916 41 1 4.7301 -0.5618 3.1072 42 1 3.9103 -1.9529 2.3649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321747167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:46 Heat of formation + Delta-G solvation = -27.705620 kcal Electronic energy + Delta-G solvation = -21072.997773 eV Core-core repulsion = 18052.811349 eV Total energy + Delta-G solvation = -3020.186423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.24279 -38.07958 -36.27496 -33.78308 -32.94509 -31.94903 -31.24545 -30.14100 -26.14435 -25.84641 -24.02570 -22.48128 -21.75694 -20.53470 -19.81549 -18.12484 -17.86986 -17.00569 -16.36956 -15.88947 -14.99474 -14.66876 -14.44441 -14.10847 -13.95058 -13.51340 -13.13565 -13.08436 -12.75441 -12.66992 -12.39783 -12.26034 -12.13608 -11.89694 -11.72943 -11.36899 -11.10729 -10.91333 -10.83179 -10.71323 -10.50448 -10.40244 -10.17356 -9.64463 -9.58341 -9.10200 -8.96873 -8.79573 -7.29603 -5.81524 -3.17616 2.20008 2.82329 3.32336 3.39002 3.39144 3.42925 4.49906 4.54970 4.68081 4.71734 4.93271 5.01126 5.05524 5.10042 5.29156 5.32680 5.39929 5.44373 5.47275 5.53464 5.56233 5.69594 5.71174 5.81857 5.89647 5.92667 6.02307 6.05395 6.06962 6.17337 6.29035 6.29275 6.38990 6.56447 6.58660 6.81181 6.84144 7.75499 7.94035 8.37039 8.44331 9.16075 9.88324 10.07983 11.36642 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.006862 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.491799 B = 4079.750102 C = 5466.464566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.128 3.872 3 H 0.086 0.914 4 C 0.149 3.851 5 N -0.755 5.755 6 C -0.246 4.246 7 H 0.091 0.909 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.879 3.121 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.277 1.277 14 N -0.716 5.716 15 C 0.512 3.488 16 O -0.547 6.547 17 C -0.101 4.101 18 C -0.094 4.094 19 C -0.090 4.090 20 C -0.161 4.161 21 C -0.156 4.156 22 C -0.090 4.090 23 C -0.112 4.112 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.363 0.637 30 H 0.260 0.740 31 H 0.403 0.597 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.414 0.588 17.751 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.104 0.896 4 C 0.021 3.979 5 N -0.401 5.401 6 C -0.376 4.376 7 H 0.109 0.891 8 C -0.189 4.189 9 N -0.580 5.580 10 Si 0.709 3.291 11 H -0.208 1.208 12 H -0.217 1.217 13 H -0.203 1.203 14 N -0.368 5.368 15 C 0.299 3.701 16 O -0.425 6.425 17 C -0.123 4.123 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.179 4.179 21 C -0.174 4.174 22 C -0.127 4.127 23 C -0.150 4.150 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.196 0.804 30 H 0.070 0.930 31 H 0.238 0.762 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.582 1.318 17.532 19.564 hybrid contribution 1.085 0.044 0.839 1.372 sum -7.497 1.362 18.371 19.889 Atomic orbital electron populations 1.22079 0.95234 1.01975 1.02206 1.21301 0.93742 0.97953 0.84652 0.89614 1.20963 0.85492 0.97592 0.93836 1.42708 1.01303 1.71291 1.24806 1.19052 0.89901 1.29334 0.99325 0.89128 1.24652 0.96150 1.00489 0.97567 1.69699 1.07352 1.48427 1.32510 0.86626 0.79864 0.79192 0.83412 1.20794 1.21681 1.20342 1.46129 1.66688 1.14444 1.09496 1.20735 0.77246 0.87336 0.84818 1.90661 1.50645 1.16006 1.85181 1.21024 0.98511 0.99036 0.93708 1.21091 1.03081 0.97156 0.91899 1.20830 0.93427 1.00978 0.97532 1.22543 0.96125 0.99302 0.99889 1.22585 0.99498 0.98170 0.97175 1.20820 0.99994 0.97139 0.94768 1.21359 0.95463 0.99667 0.98541 0.92450 0.91555 0.92455 0.94913 0.94082 0.80427 0.93016 0.76152 0.88952 0.90805 0.91189 0.91352 0.91045 0.87668 0.87571 0.90912 0.90804 0.91096 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 37.16 0.35 -1.68 16 2 C 0.13 2.04 2.73 -67.93 -0.19 1.86 16 3 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 4 C 0.15 2.75 5.82 -4.04 -0.02 2.73 16 5 N -0.75 -17.48 5.24 -59.91 -0.31 -17.80 16 6 C -0.25 -6.85 10.47 -15.06 -0.16 -7.01 16 7 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 8 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 9 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 10 Si 0.88 22.04 27.74 -169.99 -4.71 17.33 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 H -0.28 -6.78 6.52 56.52 0.37 -6.42 16 14 N -0.72 -10.70 4.32 -53.80 -0.23 -10.93 16 15 C 0.51 7.85 7.10 -10.99 -0.08 7.77 16 16 O -0.55 -10.14 15.42 5.56 0.09 -10.05 16 17 C -0.10 -1.22 2.05 -92.94 -0.19 -1.41 16 18 C -0.09 -1.10 4.31 -27.30 -0.12 -1.22 16 19 C -0.09 -0.85 5.61 -27.54 -0.15 -1.00 16 20 C -0.16 -1.60 9.34 -35.28 -0.33 -1.93 16 21 C -0.16 -1.64 9.34 -35.28 -0.33 -1.97 16 22 C -0.09 -0.95 5.62 -27.52 -0.15 -1.10 16 23 C -0.11 -1.41 4.87 -27.27 -0.13 -1.55 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.36 8.42 5.20 -40.82 -0.21 8.20 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.40 5.57 7.61 -40.82 -0.31 5.26 16 32 H 0.09 0.91 7.89 -51.93 -0.41 0.50 16 33 H 0.07 0.89 7.77 -51.93 -0.40 0.48 16 34 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.61 6.68 -51.93 -0.35 0.27 16 37 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.11 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.67 6.68 -51.93 -0.35 0.33 16 41 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 42 H 0.08 0.99 6.99 -51.93 -0.36 0.63 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -32.23 331.26 -8.00 -40.23 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -7.00 Total: 10.87 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.60 Total: -6.40 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.23 Total: -56.97 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.23 -8.00 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321747167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.527 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds