Wall clock time and date at job start Mon Mar 30 2020 19:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47130 * 2 1 4 4 C 1.53004 * 109.47216 * 240.00005 * 2 1 3 5 5 N 1.46502 * 109.46806 * 185.00134 * 4 2 1 6 6 C 1.36938 * 119.99627 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00150 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99836 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99890 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00249 * 0.02562 * 8 6 5 11 11 H 1.48507 * 109.46881 * 89.99672 * 10 8 6 12 12 H 1.48495 * 109.47289 * 209.99939 * 10 8 6 13 13 H 1.48504 * 109.47011 * 330.00110 * 10 8 6 14 14 N 1.46503 * 109.47150 * 119.99995 * 2 1 3 15 15 C 1.34776 * 120.00143 * 275.00331 * 14 2 1 16 16 O 1.21280 * 119.99962 * 359.97438 * 15 14 2 17 17 C 1.50700 * 120.00274 * 180.02562 * 15 14 2 18 18 C 1.51846 * 108.65080 * 179.97438 * 17 15 14 19 19 C 1.53027 * 110.71427 * 172.37712 * 18 17 15 20 20 C 1.51370 * 108.62263 * 85.75620 * 19 18 17 21 21 C 1.29519 * 120.35874 * 288.10440 * 20 19 18 22 22 C 1.51374 * 120.36032 * 359.97438 * 21 20 19 23 23 C 1.51860 * 108.61780 * 55.93348 * 17 15 14 24 24 H 1.08999 * 109.47217 * 299.99939 * 1 2 3 25 25 H 1.09007 * 109.46848 * 60.00256 * 1 2 3 26 26 H 1.09002 * 109.47180 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47031 * 304.99893 * 4 2 1 28 28 H 1.08994 * 109.46895 * 65.00406 * 4 2 1 29 29 H 0.97001 * 120.00505 * 359.97438 * 5 4 2 30 30 H 0.97007 * 119.99789 * 179.97438 * 9 8 6 31 31 H 0.97006 * 120.00119 * 95.00166 * 14 2 1 32 32 H 1.08999 * 108.48612 * 297.95113 * 17 15 14 33 33 H 1.09002 * 109.22356 * 52.06835 * 18 17 15 34 34 H 1.09006 * 109.22051 * 292.67843 * 18 17 15 35 35 H 1.09005 * 109.60906 * 205.49425 * 19 18 17 36 36 H 1.09004 * 109.61586 * 326.01447 * 19 18 17 37 37 H 1.07997 * 119.82366 * 108.07112 * 20 19 18 38 38 H 1.08004 * 119.82012 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.61219 * 191.64375 * 22 21 20 40 40 H 1.09003 * 109.61489 * 312.16301 * 22 21 20 41 41 H 1.08997 * 109.25443 * 67.31378 * 23 17 15 42 42 H 1.09003 * 109.19061 * 307.92992 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5001 -0.8264 -1.1905 6 6 4.1839 -1.4379 -2.2071 7 1 3.6469 -1.8423 -3.0524 8 6 5.5674 -1.5371 -2.1517 9 7 6.2246 -2.1253 -3.1286 10 14 6.4962 -0.8369 -0.6900 11 1 6.6277 -1.8802 0.3586 12 1 7.8469 -0.3994 -1.1253 13 1 5.7523 0.3254 -0.1414 14 7 2.0183 -0.6906 1.1962 15 6 2.1470 -0.0183 2.3572 16 8 1.8589 1.1585 2.4116 17 6 2.6499 -0.7285 3.5875 18 6 2.6939 0.2630 4.7367 19 6 3.0171 -0.4478 6.0528 20 6 4.5208 -0.5588 6.1857 21 6 5.1850 -1.3821 5.4383 22 6 4.4659 -2.2442 4.4229 23 6 3.9976 -1.3523 3.2704 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6054 -1.7197 -1.2952 28 1 1.7517 -0.1583 -2.1369 29 1 3.9825 -0.4622 -0.4318 30 1 7.1915 -2.1942 -3.0901 31 1 2.2490 -1.6318 1.1526 32 1 1.9476 -1.5233 3.8391 33 1 1.7253 0.7554 4.8232 34 1 3.4603 1.0116 4.5356 35 1 2.6176 0.1284 6.8874 36 1 2.5756 -1.4444 6.0484 37 1 5.0428 0.0522 6.9071 38 1 6.2579 -1.4539 5.5401 39 1 5.1461 -3.0064 4.0428 40 1 3.6044 -2.7200 4.8916 41 1 4.7301 -0.5618 3.1072 42 1 3.9103 -1.9529 2.3649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321747167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:24:46 Heat of formation + Delta-G solvation = -48.419250 kcal Electronic energy + Delta-G solvation = -21073.895983 eV Core-core repulsion = 18052.811349 eV Total energy + Delta-G solvation = -3021.084634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38670 -39.08091 -37.73294 -35.54465 -34.01032 -33.17318 -32.73406 -31.47811 -27.65628 -26.89470 -24.90498 -24.17744 -23.09945 -21.80542 -20.91867 -19.80419 -18.90652 -18.24901 -17.42817 -17.04154 -16.71852 -16.03216 -15.71042 -15.55511 -15.02869 -14.85034 -14.53998 -14.17744 -14.08549 -13.91229 -13.77034 -13.63195 -13.26954 -13.09284 -12.88805 -12.66669 -12.58173 -12.24728 -12.16503 -11.92345 -11.79642 -11.76686 -11.52305 -11.25065 -11.04967 -10.74844 -10.09749 -9.89308 -9.33840 -8.05614 -5.38639 1.32596 1.35780 1.41608 1.42395 1.63240 2.22738 2.43402 3.26378 3.50955 3.60322 3.71850 3.81045 3.92639 4.10147 4.19947 4.24972 4.26465 4.39938 4.45419 4.48666 4.59103 4.69667 4.78719 4.83766 4.87336 4.90962 4.92734 5.04387 5.10225 5.16166 5.21644 5.27985 5.29255 5.39966 5.56488 5.74069 5.80378 6.05146 6.18163 6.56773 7.04216 7.25103 7.79884 7.98107 9.15723 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.006862 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.491799 B = 4079.750102 C = 5466.464566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.136 3.864 3 H 0.062 0.938 4 C 0.148 3.852 5 N -0.757 5.757 6 C -0.231 4.231 7 H 0.064 0.936 8 C -0.055 4.055 9 N -0.979 5.979 10 Si 0.944 3.056 11 H -0.264 1.264 12 H -0.298 1.298 13 H -0.271 1.271 14 N -0.713 5.713 15 C 0.509 3.491 16 O -0.583 6.583 17 C -0.093 4.093 18 C -0.090 4.090 19 C -0.085 4.085 20 C -0.161 4.161 21 C -0.171 4.171 22 C -0.086 4.086 23 C -0.111 4.111 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.363 0.637 30 H 0.258 0.742 31 H 0.410 0.590 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.045 0.955 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.517 0.138 20.022 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.080 0.920 4 C 0.021 3.979 5 N -0.403 5.403 6 C -0.362 4.362 7 H 0.082 0.918 8 C -0.247 4.247 9 N -0.630 5.630 10 Si 0.772 3.228 11 H -0.190 1.190 12 H -0.225 1.225 13 H -0.196 1.196 14 N -0.365 5.365 15 C 0.296 3.704 16 O -0.463 6.463 17 C -0.114 4.114 18 C -0.128 4.128 19 C -0.122 4.122 20 C -0.179 4.179 21 C -0.189 4.189 22 C -0.123 4.123 23 C -0.149 4.149 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.197 0.803 30 H 0.067 0.933 31 H 0.247 0.753 32 H 0.141 0.859 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.729 0.858 19.826 22.101 hybrid contribution 1.344 0.208 0.056 1.361 sum -8.385 1.067 19.882 21.604 Atomic orbital electron populations 1.21988 0.92555 1.03240 1.02652 1.21133 0.95660 0.96227 0.83918 0.91979 1.21130 0.82804 0.98629 0.95295 1.42713 1.03204 1.70746 1.23626 1.19049 0.90038 1.27905 0.99204 0.91811 1.25359 0.97224 1.01735 1.00404 1.69860 1.07477 1.50756 1.34904 0.85588 0.77853 0.78965 0.80424 1.18966 1.22540 1.19625 1.46128 1.66463 1.14731 1.09184 1.21346 0.76425 0.86991 0.85597 1.90645 1.52255 1.17653 1.85779 1.21056 0.98748 0.99529 0.92071 1.21044 1.02023 0.96756 0.93013 1.20824 0.93145 1.01747 0.96501 1.22725 0.96581 0.98857 0.99724 1.22688 0.99819 0.98776 0.97576 1.20805 1.00776 0.96716 0.94019 1.21341 0.95023 0.99181 0.99382 0.92783 0.90352 0.90743 0.93467 0.94043 0.80344 0.93311 0.75314 0.85910 0.91266 0.93556 0.89922 0.89507 0.86832 0.87423 0.90837 0.88824 0.93562 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.48 71.98 0.68 -2.78 16 2 C 0.14 4.13 2.73 44.99 0.12 4.25 16 3 H 0.06 2.21 7.58 -2.39 -0.02 2.20 16 4 C 0.15 5.26 5.82 86.38 0.50 5.76 16 5 N -0.76 -34.40 5.24 -343.46 -1.80 -36.20 16 6 C -0.23 -12.87 10.47 84.03 0.88 -11.99 16 7 H 0.06 3.85 8.06 -2.91 -0.02 3.82 16 8 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 9 N -0.98 -62.00 13.97 21.65 0.30 -61.70 16 10 Si 0.94 45.73 27.74 68.60 1.90 47.63 16 11 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 13 H -0.27 -12.63 6.52 99.48 0.65 -11.98 16 14 N -0.71 -20.11 4.32 -442.53 -1.91 -22.02 16 15 C 0.51 14.88 7.10 87.66 0.62 15.51 16 16 O -0.58 -21.28 15.42 -3.03 -0.05 -21.33 16 17 C -0.09 -2.04 2.05 -12.29 -0.03 -2.06 16 18 C -0.09 -1.95 4.31 30.22 0.13 -1.82 16 19 C -0.09 -1.35 5.61 30.07 0.17 -1.18 16 20 C -0.16 -2.82 9.34 27.37 0.26 -2.57 16 21 C -0.17 -3.23 9.34 27.38 0.26 -2.98 16 22 C -0.09 -1.59 5.62 30.09 0.17 -1.43 16 23 C -0.11 -2.59 4.87 30.24 0.15 -2.44 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.36 16.43 5.20 -92.71 -0.48 15.95 16 30 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 31 H 0.41 10.44 7.61 -92.70 -0.71 9.73 16 32 H 0.12 1.97 7.89 -2.39 -0.02 1.96 16 33 H 0.07 1.56 7.77 -2.39 -0.02 1.54 16 34 H 0.05 1.21 7.86 -2.38 -0.02 1.19 16 35 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.09 1.14 6.68 -2.38 -0.02 1.12 16 37 H 0.11 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.11 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.09 1.36 6.68 -2.39 -0.02 1.34 16 41 H 0.05 1.30 7.86 -2.39 -0.02 1.28 16 42 H 0.07 1.69 6.99 -2.39 -0.02 1.68 16 Total: -1.00 -69.74 331.26 2.58 -67.15 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.24 Total: 32.94 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 4.38 Total: -6.48 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -3.41 Total: -119.92 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Total: -69.74 2.58 -67.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321747167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.735 kcal (2) G-P(sol) polarization free energy of solvation -69.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds