Wall clock time and date at job start Mon Mar 30 2020 19:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47229 * 2 1 4 4 C 1.50697 * 109.46996 * 239.99851 * 2 1 3 5 5 H 1.07999 * 119.99956 * 239.99610 * 4 2 1 6 6 C 1.37874 * 119.99874 * 60.00254 * 4 2 1 7 7 N 1.31512 * 120.00286 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99718 * 179.72242 * 6 4 2 9 9 H 1.48498 * 109.46775 * 59.99899 * 8 6 4 10 10 H 1.48499 * 109.46784 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47110 * 299.99912 * 8 6 4 12 12 C 1.50706 * 109.47004 * 119.99785 * 2 1 3 13 13 O 1.21274 * 119.99631 * 95.59839 * 12 2 1 14 14 N 1.34781 * 119.99931 * 275.58987 * 12 2 1 15 15 C 1.43530 * 117.79862 * 184.95612 * 14 12 2 16 16 C 1.55604 * 111.02232 * 285.35914 * 15 14 12 17 17 C 1.57163 * 99.10530 * 308.96584 * 16 15 14 18 18 N 1.48631 * 108.25669 * 326.46559 * 17 16 15 19 19 C 1.47998 * 109.58112 * 225.66482 * 18 17 16 20 20 C 1.54177 * 105.22261 * 215.02429 * 19 18 17 21 21 C 1.54066 * 105.15223 * 24.38450 * 20 19 18 22 22 C 1.52340 * 99.78466 * 117.30545 * 18 17 16 23 23 H 1.08998 * 114.23629 * 27.85961 * 22 18 17 24 24 C 1.45126 * 117.80115 * 5.21778 * 14 12 2 25 25 H 1.09009 * 109.47075 * 302.50247 * 1 2 3 26 26 H 1.09003 * 109.47232 * 62.49904 * 1 2 3 27 27 H 1.08998 * 109.47120 * 182.50629 * 1 2 3 28 28 H 0.97000 * 120.00123 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.22337 * 45.47778 * 15 14 12 30 30 H 1.08996 * 109.22376 * 164.83546 * 15 14 12 31 31 H 1.09000 * 111.51657 * 191.48544 * 16 15 14 32 32 H 1.09007 * 111.53181 * 66.44877 * 16 15 14 33 33 H 1.08998 * 109.70110 * 206.77403 * 17 16 15 34 34 H 1.08997 * 109.73743 * 86.17936 * 17 16 15 35 35 H 1.08993 * 110.29009 * 96.08777 * 19 18 17 36 36 H 1.09001 * 110.29243 * 333.96022 * 19 18 17 37 37 H 1.09000 * 110.31306 * 265.46429 * 20 19 18 38 38 H 1.09003 * 110.30937 * 143.30356 * 20 19 18 39 39 H 1.08999 * 110.20019 * 240.76228 * 21 20 19 40 40 H 1.09001 * 110.26728 * 118.92692 * 21 20 19 41 41 H 1.08993 * 110.31835 * 232.12053 * 24 14 12 42 42 H 1.08997 * 110.32170 * 354.21102 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3283 -1.1155 -4.0079 9 1 1.8393 -2.5177 -4.0102 10 1 1.8317 -0.4166 -5.2204 11 1 3.8133 -1.1090 -4.0054 12 6 2.0323 -0.7104 1.2305 13 8 2.3310 -1.8844 1.1734 14 7 2.1497 -0.0409 2.3944 15 6 2.7342 -0.7322 3.5083 16 6 1.7373 -1.7645 4.1100 17 6 0.4873 -0.8286 4.2878 18 7 0.9715 0.5371 4.6191 19 6 0.1821 1.0836 5.7453 20 6 0.0595 2.5935 5.4586 21 6 0.2289 2.7288 3.9333 22 6 0.4454 1.2988 3.4092 23 1 -0.4484 0.8646 2.9611 24 6 1.6714 1.3285 2.4388 25 1 -0.3634 0.5522 0.8668 26 1 -0.3634 0.4745 -0.9116 27 1 -0.3633 -1.0267 0.0449 28 1 0.7087 1.1612 -3.4844 29 1 3.6289 -1.2579 3.1750 30 1 3.0088 -0.0086 4.2757 31 1 2.0883 -2.1475 5.0682 32 1 1.5317 -2.5760 3.4118 33 1 -0.1396 -1.2027 5.0972 34 1 -0.0864 -0.8006 3.3615 35 1 0.7042 0.9190 6.6878 36 1 -0.8053 0.6228 5.7736 37 1 0.8460 3.1422 5.9767 38 1 -0.9213 2.9582 5.7640 39 1 1.0958 3.3487 3.7044 40 1 -0.6688 3.1601 3.4904 41 1 2.4469 1.9878 2.8286 42 1 1.3630 1.6541 1.4454 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328746425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:10 Heat of formation + Delta-G solvation = 4.879638 kcal Electronic energy + Delta-G solvation = -22079.966172 eV Core-core repulsion = 19061.192752 eV Total energy + Delta-G solvation = -3018.773421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38813 -38.23254 -35.02113 -34.01203 -33.07687 -30.63603 -29.90910 -29.03288 -25.22797 -25.07595 -24.54979 -22.51138 -21.32461 -20.55422 -20.22927 -17.90537 -16.58904 -16.11557 -15.75581 -15.57873 -14.90403 -14.49946 -14.21626 -13.96764 -13.73884 -13.46141 -12.92806 -12.82701 -12.49459 -12.18144 -11.53531 -11.47210 -11.33516 -11.30742 -11.17385 -10.97549 -10.81516 -10.70411 -10.66945 -10.53312 -10.42624 -10.26998 -10.07081 -9.96213 -8.96632 -8.72666 -8.48147 -8.18129 -7.83659 -6.01261 -4.04101 3.37399 3.39685 3.45394 3.78240 3.90294 4.20380 4.48720 4.54467 4.69802 4.89171 5.14595 5.24000 5.30891 5.31944 5.34537 5.49587 5.59389 5.62883 5.68602 5.81061 5.85497 5.88681 5.98453 6.02666 6.10236 6.15268 6.18636 6.22874 6.48137 6.58130 6.65450 6.77850 6.86659 6.92455 7.00743 7.42200 7.56642 7.79114 8.02664 8.18317 8.46918 9.01889 9.35232 9.60984 11.05960 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030137 B = 0.005888 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.868355 B = 4754.290359 C = 5341.435292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.047 0.953 4 C -0.497 4.497 5 H 0.068 0.932 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.509 3.491 13 O -0.545 6.545 14 N -0.612 5.612 15 C 0.136 3.864 16 C -0.131 4.131 17 C 0.011 3.989 18 N -0.453 5.453 19 C 0.012 3.988 20 C -0.122 4.122 21 C -0.126 4.126 22 C 0.010 3.990 23 H 0.088 0.912 24 C 0.125 3.875 25 H 0.012 0.988 26 H 0.094 0.906 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 4.635 15.479 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.065 0.935 4 C -0.536 4.536 5 H 0.086 0.914 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.300 3.700 13 O -0.421 6.421 14 N -0.345 5.345 15 C 0.011 3.989 16 C -0.170 4.170 17 C -0.118 4.118 18 N -0.176 5.176 19 C -0.117 4.117 20 C -0.161 4.161 21 C -0.165 4.165 22 C -0.100 4.100 23 H 0.106 0.894 24 C 0.000 4.000 25 H 0.031 0.969 26 H 0.113 0.887 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.039 4.155 15.480 16.157 hybrid contribution -0.748 -0.429 -0.812 1.185 sum -2.787 3.726 14.667 15.388 Atomic orbital electron populations 1.21752 0.96480 0.99443 1.01227 1.18891 0.94120 0.96544 0.89725 0.93500 1.21057 1.30930 1.12429 0.89162 0.91375 1.24925 0.95142 0.95065 0.99015 1.69845 1.37137 1.23066 1.23587 0.86532 0.79259 0.79785 0.81727 1.20201 1.21364 1.20240 1.22098 0.75716 0.87424 0.84729 1.90501 1.49252 1.16975 1.85336 1.47034 1.63096 1.13146 1.11222 1.20920 0.94408 0.94624 0.88918 1.23227 0.96332 0.97158 1.00305 1.23974 0.97068 0.90613 1.00097 1.70273 1.42751 1.02971 1.01629 1.23274 0.96693 0.95087 0.96601 1.22278 1.01571 0.95813 0.96392 1.22318 1.02419 0.96699 0.95036 1.25283 0.97737 0.93716 0.93216 0.89405 1.22344 0.93814 0.83452 1.00347 0.96941 0.88748 0.95125 0.92929 0.93431 0.89404 0.91300 0.90378 0.93339 0.91562 0.90349 0.93720 0.91275 0.91674 0.90684 0.91384 0.91267 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.73 37.16 0.32 -2.72 16 2 C 0.03 0.70 1.76 -92.92 -0.16 0.54 16 3 H 0.05 1.18 6.38 -51.93 -0.33 0.85 16 4 C -0.50 -14.17 8.33 -34.44 -0.29 -14.46 16 5 H 0.07 2.06 7.02 -52.49 -0.37 1.69 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.00 11.30 55.43 0.63 -24.38 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.51 11.82 6.52 -10.98 -0.07 11.74 16 13 O -0.54 -14.35 14.54 5.56 0.08 -14.27 16 14 N -0.61 -11.31 1.96 -173.23 -0.34 -11.65 16 15 C 0.14 2.27 4.99 -4.23 -0.02 2.25 16 16 C -0.13 -2.01 7.09 -23.08 -0.16 -2.17 16 17 C 0.01 0.16 5.20 -0.60 0.00 0.16 16 18 N -0.45 -5.86 3.69 -213.58 -0.79 -6.65 16 19 C 0.01 0.13 6.37 -2.60 -0.02 0.11 16 20 C -0.12 -1.15 6.98 -25.56 -0.18 -1.33 16 21 C -0.13 -1.36 6.48 -25.74 -0.17 -1.52 16 22 C 0.01 0.13 2.82 -62.35 -0.18 -0.05 16 23 H 0.09 1.27 5.93 -51.93 -0.31 0.97 16 24 C 0.12 1.95 5.22 -2.96 -0.02 1.94 16 25 H 0.01 0.23 5.96 -51.92 -0.31 -0.08 16 26 H 0.09 2.40 6.01 -51.93 -0.31 2.09 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.05 0.87 7.81 -51.93 -0.41 0.47 16 30 H 0.09 1.33 6.86 -51.93 -0.36 0.98 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.40 7.35 -51.93 -0.38 1.02 16 33 H 0.05 0.61 7.28 -51.93 -0.38 0.23 16 34 H 0.07 1.07 6.19 -51.93 -0.32 0.75 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.46 7.42 -51.93 -0.39 0.08 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.78 7.31 -51.93 -0.38 0.40 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.99 7.61 -51.93 -0.40 0.59 16 42 H 0.11 1.81 4.58 -51.93 -0.24 1.58 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -30.20 309.01 -8.36 -38.56 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.54 Total: 0.84 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.03 Total: -3.97 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.50 Total: -42.68 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.08 Total: -14.27 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.20 -8.36 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328746425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.439 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds