Wall clock time and date at job start Mon Mar 30 2020 19:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47155 * 2 1 4 4 C 1.50699 * 109.47705 * 119.99870 * 2 1 3 5 5 H 1.08000 * 119.99843 * 119.99903 * 4 2 1 6 6 C 1.37872 * 120.00010 * 300.00791 * 4 2 1 7 7 N 1.31520 * 120.00201 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00119 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47293 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47442 * 119.99311 * 8 6 4 11 11 H 1.48500 * 109.47414 * 239.99446 * 8 6 4 12 12 C 1.50703 * 109.47343 * 240.00594 * 2 1 3 13 13 O 1.21281 * 119.99573 * 263.91488 * 12 2 1 14 14 N 1.34769 * 120.00472 * 83.90941 * 12 2 1 15 15 C 1.45957 * 117.51588 * 355.02491 * 14 12 2 16 16 C 1.56933 * 102.57265 * 121.44659 * 15 14 12 17 17 C 1.54049 * 106.89006 * 324.30412 * 16 15 14 18 18 N 1.41795 * 110.66803 * 94.74950 * 17 16 15 19 19 C 1.45795 * 122.26361 * 134.41075 * 18 17 16 20 20 C 1.55550 * 103.52960 * 185.29352 * 19 18 17 21 21 C 1.54921 * 105.07265 * 338.37103 * 20 19 18 22 22 C 1.46549 * 121.49338 * 276.29451 * 18 17 16 23 23 H 1.09004 * 110.41115 * 291.25744 * 22 18 17 24 24 C 1.45027 * 117.51593 * 175.04221 * 14 12 2 25 25 H 1.08997 * 109.47291 * 306.15182 * 1 2 3 26 26 H 1.08995 * 109.47356 * 66.15218 * 1 2 3 27 27 H 1.09004 * 109.46930 * 186.15296 * 1 2 3 28 28 H 0.96994 * 120.00205 * 180.02562 * 7 6 4 29 29 H 1.09002 * 110.81615 * 3.13720 * 15 14 12 30 30 H 1.08997 * 110.82243 * 239.76992 * 15 14 12 31 31 H 1.08997 * 109.97378 * 204.95359 * 16 15 14 32 32 H 1.09008 * 110.03806 * 83.68441 * 16 15 14 33 33 H 1.09006 * 109.23483 * 334.43833 * 17 16 15 34 34 H 1.09002 * 109.20150 * 215.03734 * 17 16 15 35 35 H 1.09005 * 110.61008 * 303.73904 * 19 18 17 36 36 H 1.09004 * 110.61409 * 66.71511 * 19 18 17 37 37 H 1.08995 * 110.33219 * 219.50049 * 20 19 18 38 38 H 1.08996 * 110.38700 * 97.27351 * 20 19 18 39 39 H 1.08997 * 110.39886 * 239.36396 * 21 20 19 40 40 H 1.08999 * 110.39640 * 117.08138 * 21 20 19 41 41 H 1.09009 * 110.07164 * 168.02629 * 24 14 12 42 42 H 1.09002 * 110.07388 * 46.44156 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3215 -1.1203 4.0078 9 1 3.1457 -2.2875 3.6037 10 1 3.1467 -0.1873 4.8164 11 1 1.1663 -1.5867 4.8161 12 6 2.0323 -0.7103 -1.2305 13 8 2.3394 -1.8821 -1.1714 14 7 2.1402 -0.0435 -2.3967 15 6 1.6522 1.3315 -2.4350 16 6 2.9313 2.1364 -2.8578 17 6 4.1357 1.4456 -2.1904 18 7 4.7346 0.5161 -3.0780 19 6 6.1782 0.4386 -3.2661 20 6 6.3409 -0.6044 -4.4086 21 6 5.0287 -1.4277 -4.3923 22 6 4.2155 -0.8466 -3.2241 23 1 4.3941 -1.4209 -2.3149 24 6 2.7321 -0.7469 -3.5184 25 1 -0.3634 0.6062 0.8298 26 1 -0.3634 0.4155 -0.9399 27 1 -0.3633 -1.0218 0.1102 28 1 0.7093 1.1616 3.4844 29 1 1.3040 1.6465 -1.4512 30 1 0.8621 1.4417 -3.1776 31 1 2.8542 3.1670 -2.5112 32 1 3.0442 2.1159 -3.9418 33 1 3.7989 0.9221 -1.2955 34 1 4.8713 2.1995 -1.9098 35 1 6.5779 1.4058 -3.5711 36 1 6.6658 0.0908 -2.3554 37 1 7.1956 -1.2515 -4.2118 38 1 6.4596 -0.1011 -5.3681 39 1 5.2438 -2.4819 -4.2182 40 1 4.4890 -1.3009 -5.3308 41 1 2.5701 -0.1862 -4.4392 42 1 2.2999 -1.7438 -3.6051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328746426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:14 Heat of formation + Delta-G solvation = -9.466263 kcal Electronic energy + Delta-G solvation = -22135.383667 eV Core-core repulsion = 19115.988161 eV Total energy + Delta-G solvation = -3019.395506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40760 -38.05767 -35.44923 -33.86187 -32.85544 -31.06587 -29.89252 -28.98029 -25.31496 -25.20263 -24.97822 -22.42206 -21.06422 -20.73374 -19.82124 -18.19418 -16.43603 -16.32052 -15.72054 -15.60028 -15.14546 -14.72032 -14.42210 -13.81113 -13.35395 -13.05993 -13.02406 -12.76129 -12.45488 -12.12070 -12.00106 -11.53630 -11.42566 -11.35440 -11.04906 -11.00444 -10.94517 -10.67370 -10.64909 -10.51342 -10.35788 -10.26157 -10.20036 -9.98680 -8.94010 -8.53343 -8.25164 -7.92630 -7.51661 -6.03819 -4.05952 3.31073 3.38781 3.46524 3.75012 3.75978 4.06407 4.46334 4.84892 4.91084 5.04136 5.13954 5.29680 5.36459 5.42559 5.56965 5.64388 5.69895 5.70674 5.85060 5.93516 5.96674 5.97323 6.02229 6.07106 6.18167 6.24815 6.29927 6.36010 6.48288 6.60322 6.68821 6.85872 6.99521 7.32957 7.46140 7.54632 7.76603 7.97265 8.04845 8.12880 8.40954 9.00172 9.28127 9.58963 11.04145 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023324 B = 0.006406 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.209940 B = 4369.851470 C = 4685.502334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.028 3.972 3 H 0.049 0.951 4 C -0.498 4.498 5 H 0.068 0.932 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.283 1.283 12 C 0.511 3.489 13 O -0.547 6.547 14 N -0.626 5.626 15 C 0.104 3.896 16 C -0.140 4.140 17 C 0.123 3.877 18 N -0.635 5.635 19 C 0.095 3.905 20 C -0.121 4.121 21 C -0.114 4.114 22 C 0.101 3.899 23 H 0.058 0.942 24 C 0.136 3.864 25 H 0.089 0.911 26 H 0.012 0.988 27 H 0.034 0.966 28 H 0.260 0.740 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.637 3.035 -13.767 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.008 3.992 3 H 0.066 0.934 4 C -0.536 4.536 5 H 0.086 0.914 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.303 3.697 13 O -0.423 6.423 14 N -0.361 5.361 15 C -0.019 4.019 16 C -0.180 4.180 17 C -0.004 4.004 18 N -0.363 5.363 19 C -0.031 4.031 20 C -0.159 4.159 21 C -0.153 4.153 22 C -0.007 4.007 23 H 0.076 0.924 24 C 0.013 3.987 25 H 0.108 0.892 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.603 2.710 -13.817 15.154 hybrid contribution 0.438 -0.521 1.358 1.519 sum 6.041 2.189 -12.459 14.018 Atomic orbital electron populations 1.21722 0.96316 1.01035 0.99658 1.18925 0.94207 0.96549 0.89568 0.93352 1.21113 1.31001 1.12380 0.89144 0.91375 1.24920 0.95114 0.95048 0.99000 1.69884 1.37132 1.23048 1.23404 0.86444 0.78674 0.79783 0.82648 1.19673 1.21074 1.20961 1.22088 0.75520 0.87228 0.84896 1.90509 1.49477 1.17119 1.85235 1.47888 1.62547 1.14235 1.11393 1.22669 0.95131 0.80681 1.03390 1.23290 0.95215 0.98478 1.01012 1.20482 0.94643 0.92335 0.92978 1.53180 1.07772 1.13658 1.61701 1.22020 0.86042 0.98522 0.96546 1.22559 0.97281 0.97310 0.98734 1.22198 0.95868 0.98824 0.98417 1.21710 0.94453 0.86657 0.97849 0.92433 1.20810 0.91372 0.97112 0.89452 0.89193 0.96908 0.94645 0.93026 0.87348 0.91986 0.91431 0.91269 0.92961 0.92744 0.91529 0.95213 0.91774 0.91451 0.91444 0.91326 0.90589 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.51 37.15 0.32 -2.74 16 2 C 0.03 0.71 1.61 -92.93 -0.15 0.56 16 3 H 0.05 1.22 6.16 -51.92 -0.32 0.90 16 4 C -0.50 -14.19 8.33 -34.44 -0.29 -14.48 16 5 H 0.07 2.07 7.01 -52.49 -0.37 1.70 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -25.03 11.39 55.43 0.63 -24.40 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 C 0.51 11.83 5.00 -10.99 -0.05 11.78 16 13 O -0.55 -14.40 14.37 5.56 0.08 -14.32 16 14 N -0.63 -11.48 1.63 -173.62 -0.28 -11.76 16 15 C 0.10 1.62 6.01 -2.21 -0.01 1.61 16 16 C -0.14 -1.94 6.15 -24.05 -0.15 -2.08 16 17 C 0.12 1.98 5.66 -5.95 -0.03 1.94 16 18 N -0.63 -9.67 3.31 -229.95 -0.76 -10.43 16 19 C 0.10 1.24 6.97 -3.07 -0.02 1.22 16 20 C -0.12 -1.34 7.07 -24.36 -0.17 -1.51 16 21 C -0.11 -1.42 6.64 -25.33 -0.17 -1.59 16 22 C 0.10 1.62 2.87 -68.25 -0.20 1.42 16 23 H 0.06 1.17 6.98 -51.93 -0.36 0.81 16 24 C 0.14 2.20 4.95 -5.56 -0.03 2.18 16 25 H 0.09 2.28 6.26 -51.93 -0.33 1.95 16 26 H 0.01 0.25 7.09 -51.93 -0.37 -0.12 16 27 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.11 1.87 4.63 -51.93 -0.24 1.63 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.91 8.04 -51.92 -0.42 0.49 16 33 H 0.05 1.05 5.47 -51.93 -0.28 0.77 16 34 H 0.05 0.81 7.96 -51.93 -0.41 0.40 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 41 H 0.08 1.06 8.07 -51.92 -0.42 0.64 16 42 H 0.07 1.21 7.74 -51.93 -0.40 0.81 16 LS Contribution 313.43 15.07 4.72 4.72 Total: -1.00 -30.69 313.43 -8.53 -39.22 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.85 Total: 0.16 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.05 Total: -0.11 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.41 Total: -46.58 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.08 Total: -14.32 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.69 -8.53 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328746426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.752 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds