Wall clock time and date at job start Mon Mar 30 2020 19:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47155 * 2 1 4 4 C 1.50699 * 109.47705 * 119.99870 * 2 1 3 5 5 H 1.08000 * 119.99843 * 119.99903 * 4 2 1 6 6 C 1.37872 * 120.00010 * 300.00791 * 4 2 1 7 7 N 1.31520 * 120.00201 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00119 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47293 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47442 * 119.99311 * 8 6 4 11 11 H 1.48500 * 109.47414 * 239.99446 * 8 6 4 12 12 C 1.50703 * 109.47343 * 240.00594 * 2 1 3 13 13 O 1.21281 * 119.99573 * 263.91488 * 12 2 1 14 14 N 1.34769 * 120.00472 * 83.90941 * 12 2 1 15 15 C 1.45957 * 117.51588 * 355.02491 * 14 12 2 16 16 C 1.56933 * 102.57265 * 121.44659 * 15 14 12 17 17 C 1.54049 * 106.89006 * 324.30412 * 16 15 14 18 18 N 1.41795 * 110.66803 * 94.74950 * 17 16 15 19 19 C 1.45795 * 122.26361 * 134.41075 * 18 17 16 20 20 C 1.55550 * 103.52960 * 185.29352 * 19 18 17 21 21 C 1.54921 * 105.07265 * 338.37103 * 20 19 18 22 22 C 1.46549 * 121.49338 * 276.29451 * 18 17 16 23 23 H 1.09004 * 110.41115 * 291.25744 * 22 18 17 24 24 C 1.45027 * 117.51593 * 175.04221 * 14 12 2 25 25 H 1.08997 * 109.47291 * 306.15182 * 1 2 3 26 26 H 1.08995 * 109.47356 * 66.15218 * 1 2 3 27 27 H 1.09004 * 109.46930 * 186.15296 * 1 2 3 28 28 H 0.96994 * 120.00205 * 180.02562 * 7 6 4 29 29 H 1.09002 * 110.81615 * 3.13720 * 15 14 12 30 30 H 1.08997 * 110.82243 * 239.76992 * 15 14 12 31 31 H 1.08997 * 109.97378 * 204.95359 * 16 15 14 32 32 H 1.09008 * 110.03806 * 83.68441 * 16 15 14 33 33 H 1.09006 * 109.23483 * 334.43833 * 17 16 15 34 34 H 1.09002 * 109.20150 * 215.03734 * 17 16 15 35 35 H 1.09005 * 110.61008 * 303.73904 * 19 18 17 36 36 H 1.09004 * 110.61409 * 66.71511 * 19 18 17 37 37 H 1.08995 * 110.33219 * 219.50049 * 20 19 18 38 38 H 1.08996 * 110.38700 * 97.27351 * 20 19 18 39 39 H 1.08997 * 110.39886 * 239.36396 * 21 20 19 40 40 H 1.08999 * 110.39640 * 117.08138 * 21 20 19 41 41 H 1.09009 * 110.07164 * 168.02629 * 24 14 12 42 42 H 1.09002 * 110.07388 * 46.44156 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3215 -1.1203 4.0078 9 1 3.1457 -2.2875 3.6037 10 1 3.1467 -0.1873 4.8164 11 1 1.1663 -1.5867 4.8161 12 6 2.0323 -0.7103 -1.2305 13 8 2.3394 -1.8821 -1.1714 14 7 2.1402 -0.0435 -2.3967 15 6 1.6522 1.3315 -2.4350 16 6 2.9313 2.1364 -2.8578 17 6 4.1357 1.4456 -2.1904 18 7 4.7346 0.5161 -3.0780 19 6 6.1782 0.4386 -3.2661 20 6 6.3409 -0.6044 -4.4086 21 6 5.0287 -1.4277 -4.3923 22 6 4.2155 -0.8466 -3.2241 23 1 4.3941 -1.4209 -2.3149 24 6 2.7321 -0.7469 -3.5184 25 1 -0.3634 0.6062 0.8298 26 1 -0.3634 0.4155 -0.9399 27 1 -0.3633 -1.0218 0.1102 28 1 0.7093 1.1616 3.4844 29 1 1.3040 1.6465 -1.4512 30 1 0.8621 1.4417 -3.1776 31 1 2.8542 3.1670 -2.5112 32 1 3.0442 2.1159 -3.9418 33 1 3.7989 0.9221 -1.2955 34 1 4.8713 2.1995 -1.9098 35 1 6.5779 1.4058 -3.5711 36 1 6.6658 0.0908 -2.3554 37 1 7.1956 -1.2515 -4.2118 38 1 6.4596 -0.1011 -5.3681 39 1 5.2438 -2.4819 -4.2182 40 1 4.4890 -1.3009 -5.3308 41 1 2.5701 -0.1862 -4.4392 42 1 2.2999 -1.7438 -3.6051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328746426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:13 Heat of formation + Delta-G solvation = -28.040301 kcal Electronic energy + Delta-G solvation = -22136.189097 eV Core-core repulsion = 19115.988161 eV Total energy + Delta-G solvation = -3020.200936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.87290 -39.51751 -36.93009 -35.87980 -34.18072 -32.84772 -31.29875 -30.25593 -27.31894 -26.64345 -26.30958 -24.07742 -22.51825 -21.79730 -21.09196 -19.83985 -18.40200 -17.90136 -17.23489 -16.87172 -16.70062 -16.46380 -15.81779 -15.30497 -14.90290 -14.67469 -14.41431 -14.15384 -13.97464 -13.64593 -13.23232 -13.15843 -12.99813 -12.77475 -12.67871 -12.60899 -12.43351 -12.27612 -12.19241 -12.06287 -12.03631 -11.71809 -11.50512 -11.36268 -11.03658 -10.61108 -10.16820 -9.43405 -8.79444 -8.19550 -6.28833 1.33559 1.35740 1.48507 1.93440 2.25995 2.43664 2.87483 3.09825 3.77327 3.80226 3.90124 4.03394 4.05626 4.28133 4.34301 4.43312 4.47147 4.62681 4.63024 4.65946 4.68342 4.75459 4.80284 4.89128 4.96125 4.99010 5.00762 5.03473 5.09561 5.14998 5.28009 5.37994 5.39439 5.45000 5.68747 5.84857 5.94291 6.16313 6.32321 6.58261 6.76320 6.84503 7.36375 7.53734 8.86859 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023324 B = 0.006406 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.209940 B = 4369.851470 C = 4685.502334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.029 3.971 3 H 0.044 0.956 4 C -0.528 4.528 5 H 0.035 0.965 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.951 3.049 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.272 1.272 12 C 0.511 3.489 13 O -0.592 6.592 14 N -0.613 5.613 15 C 0.096 3.904 16 C -0.123 4.123 17 C 0.118 3.882 18 N -0.628 5.628 19 C 0.087 3.913 20 C -0.110 4.110 21 C -0.108 4.108 22 C 0.099 3.901 23 H 0.000 1.000 24 C 0.136 3.864 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.001 0.999 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.008 0.992 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.936 4.580 -16.034 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.008 3.992 3 H 0.062 0.938 4 C -0.566 4.566 5 H 0.053 0.947 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.776 3.224 9 H -0.210 1.210 10 H -0.196 1.196 11 H -0.197 1.197 12 C 0.301 3.699 13 O -0.472 6.472 14 N -0.345 5.345 15 C -0.026 4.026 16 C -0.162 4.162 17 C -0.009 4.009 18 N -0.356 5.356 19 C -0.039 4.039 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.009 4.009 23 H 0.018 0.982 24 C 0.013 3.987 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.020 0.980 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.026 0.974 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.899 4.307 -16.116 17.694 hybrid contribution 0.376 -0.962 2.079 2.321 sum 6.275 3.345 -14.037 15.735 Atomic orbital electron populations 1.21530 0.95369 0.99604 1.00804 1.18803 0.94898 0.95893 0.89575 0.93829 1.21207 1.31750 1.12162 0.91508 0.94650 1.25524 0.95163 0.95727 1.01136 1.69941 1.36999 1.23326 1.24296 0.85621 0.78474 0.78575 0.79695 1.20959 1.19587 1.19703 1.21741 0.75491 0.86606 0.86016 1.90478 1.51739 1.18936 1.86092 1.47872 1.61218 1.15000 1.10399 1.22908 0.97108 0.79048 1.03515 1.23170 0.92463 0.98722 1.01884 1.20531 0.96115 0.92499 0.91777 1.53481 1.08868 1.12737 1.60517 1.22218 0.84675 1.00388 0.96650 1.22552 0.96738 0.96649 0.98910 1.22195 0.96199 0.98771 0.97520 1.21633 0.95260 0.86850 0.97155 0.98233 1.21002 0.91052 0.96915 0.89709 0.90882 0.93360 0.96568 0.92474 0.89380 0.88489 0.89343 0.89166 0.98026 0.91749 0.89346 0.97423 0.90814 0.88878 0.91584 0.88889 0.86771 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.53 8.51 71.98 0.61 -4.92 16 2 C 0.03 1.52 1.61 -12.29 -0.02 1.50 16 3 H 0.04 2.29 6.16 -2.38 -0.01 2.27 16 4 C -0.53 -31.62 8.33 25.60 0.21 -31.41 16 5 H 0.04 2.30 7.01 -2.91 -0.02 2.28 16 6 C 0.02 1.38 5.30 84.65 0.45 1.82 16 7 N -0.91 -51.25 11.39 21.45 0.24 -51.01 16 8 Si 0.95 45.94 29.54 68.60 2.03 47.97 16 9 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 C 0.51 24.62 5.00 87.66 0.44 25.06 16 13 O -0.59 -33.17 14.37 -3.03 -0.04 -33.21 16 14 N -0.61 -22.29 1.63 -821.62 -1.34 -23.63 16 15 C 0.10 2.79 6.01 87.86 0.53 3.32 16 16 C -0.12 -3.03 6.15 32.33 0.20 -2.84 16 17 C 0.12 3.74 5.66 87.59 0.50 4.23 16 18 N -0.63 -18.39 3.31 -881.41 -2.92 -21.31 16 19 C 0.09 2.13 6.97 87.39 0.61 2.74 16 20 C -0.11 -2.13 7.07 32.13 0.23 -1.91 16 21 C -0.11 -2.47 6.64 31.50 0.21 -2.26 16 22 C 0.10 3.18 2.87 44.76 0.13 3.30 16 23 H 0.00 -0.01 6.98 -2.38 -0.02 -0.03 16 24 C 0.14 4.25 4.95 86.18 0.43 4.67 16 25 H 0.07 3.75 6.26 -2.39 -0.01 3.74 16 26 H 0.05 1.92 7.09 -2.39 -0.02 1.90 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.09 2.97 4.63 -2.39 -0.01 2.96 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.92 8.04 -2.38 -0.02 1.90 16 33 H 0.00 0.06 5.47 -2.38 -0.01 0.05 16 34 H 0.06 1.86 7.96 -2.39 -0.02 1.85 16 35 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.70 7.94 -2.39 -0.02 1.68 16 41 H 0.11 2.72 8.07 -2.38 -0.02 2.71 16 42 H 0.06 1.99 7.74 -2.39 -0.02 1.97 16 Total: -1.00 -70.85 313.43 3.48 -67.37 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.99 Total: 10.50 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 4.52 Total: 3.32 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -4.01 Total: -95.95 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.04 Total: -33.21 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -70.85 3.48 -67.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328746426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.330 kcal (2) G-P(sol) polarization free energy of solvation -70.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds