Wall clock time and date at job start Mon Mar 30 2020 19:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46666 * 2 1 4 4 C 1.53001 * 109.47170 * 120.00343 * 2 1 3 5 5 C 1.53005 * 109.46706 * 185.00007 * 4 2 1 6 6 C 1.53001 * 109.46706 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47146 * 180.02562 * 6 5 4 8 8 C 1.36939 * 120.00014 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00029 * 0.02562 * 8 7 6 10 10 C 1.38810 * 119.99799 * 179.97438 * 8 7 6 11 11 N 1.31622 * 120.00012 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99908 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47246 * 60.00321 * 12 10 8 14 14 H 1.48499 * 109.47284 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47201 * 300.00272 * 12 10 8 16 16 N 1.46499 * 109.47188 * 240.00586 * 2 1 3 17 17 C 1.34778 * 120.00494 * 84.99718 * 16 2 1 18 18 O 1.21617 * 119.99507 * 359.97438 * 17 16 2 19 19 C 1.47101 * 120.00193 * 180.02562 * 17 16 2 20 20 C 1.32874 * 124.76773 * 179.97438 * 19 17 16 21 21 C 1.51119 * 110.80017 * 179.97438 * 20 19 17 22 22 C 1.54574 * 104.83668 * 343.43160 * 21 20 19 23 23 C 1.51112 * 124.62052 * 359.97438 * 19 17 16 24 24 H 1.09003 * 109.47193 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47640 * 299.99664 * 1 2 3 26 26 H 1.08999 * 109.47552 * 60.00032 * 1 2 3 27 27 H 1.09004 * 109.47015 * 304.99822 * 4 2 1 28 28 H 1.08995 * 109.47330 * 65.00150 * 4 2 1 29 29 H 1.08995 * 109.47167 * 299.99881 * 5 4 2 30 30 H 1.09000 * 109.46771 * 60.00309 * 5 4 2 31 31 H 1.09004 * 109.47015 * 299.99815 * 6 5 4 32 32 H 1.09002 * 109.47161 * 59.99832 * 6 5 4 33 33 H 0.96995 * 119.99943 * 359.97438 * 7 6 5 34 34 H 0.97006 * 119.99751 * 179.97438 * 11 10 8 35 35 H 0.97008 * 119.99678 * 265.00279 * 16 2 1 36 36 H 1.07998 * 124.58369 * 0.02562 * 20 19 17 37 37 H 1.09003 * 110.36283 * 224.59007 * 21 20 19 38 38 H 1.09000 * 110.45170 * 102.32072 * 21 20 19 39 39 H 1.08994 * 110.98601 * 266.91919 * 22 21 20 40 40 H 1.09005 * 110.98070 * 143.12853 * 22 21 20 41 41 H 1.09002 * 110.36615 * 77.73535 * 23 19 17 42 42 H 1.08995 * 110.36540 * 315.52472 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3135 6 6 4.0748 -1.3341 2.5631 7 7 5.5348 -1.2302 2.6251 8 6 6.2185 -1.8035 3.6639 9 1 5.6814 -2.3326 4.4373 10 6 7.6019 -1.7055 3.7224 11 7 8.2564 -1.0611 2.7796 12 14 8.5347 -2.4881 5.1390 13 1 8.2778 -3.9507 5.1529 14 1 9.9893 -2.2422 4.9699 15 1 8.0783 -1.8932 6.4209 16 7 2.0183 -0.6905 -1.1962 17 6 2.1470 -0.0181 -2.3572 18 8 1.8573 1.1618 -2.4118 19 6 2.6369 -0.7116 -3.5584 20 6 2.7992 -0.1431 -4.7484 21 6 3.3182 -1.1437 -5.7549 22 6 3.8539 -2.3185 -4.9051 23 6 3.0252 -2.1711 -3.6088 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2055 29 1 3.9994 -1.0727 0.4258 30 1 3.8531 0.4370 1.3573 31 1 3.6402 -0.8742 3.4506 32 1 3.7864 -2.3844 2.5198 33 1 6.0171 -0.7553 1.9304 34 1 9.2232 -0.9923 2.8207 35 1 2.2490 -1.6317 -1.1527 36 1 2.5895 0.8937 -4.9661 37 1 4.1224 -0.7051 -6.3457 38 1 2.5119 -1.4827 -6.4054 39 1 4.9185 -2.2004 -4.7030 40 1 3.6539 -3.2740 -5.3900 41 1 2.1354 -2.7991 -3.6542 42 1 3.6295 -2.4330 -2.7403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330784475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:43 Heat of formation + Delta-G solvation = -34.891679 kcal Electronic energy + Delta-G solvation = -19872.302477 eV Core-core repulsion = 16851.804443 eV Total energy + Delta-G solvation = -3020.498034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13668 -38.10064 -36.59319 -34.80634 -32.58182 -31.25423 -29.59798 -29.19337 -28.40214 -25.65583 -23.36289 -22.46580 -21.26555 -20.79816 -20.46726 -18.85179 -17.28387 -16.99175 -16.39888 -15.76230 -14.96497 -14.67184 -14.63381 -14.29232 -13.70935 -13.46648 -13.15652 -12.99700 -12.89437 -12.66914 -12.29409 -12.12683 -12.01051 -11.87949 -11.46957 -11.39141 -11.28615 -11.12556 -10.82915 -10.78239 -10.45687 -10.38026 -10.01712 -9.88709 -9.66214 -9.19926 -8.97014 -8.84036 -6.89373 -5.73859 -3.02643 1.25833 3.20053 3.27822 3.45333 3.49319 3.50782 4.28668 4.34482 4.58594 4.74055 4.77117 4.87794 5.04995 5.08765 5.18729 5.38658 5.42593 5.44985 5.55983 5.57385 5.59535 5.60930 5.65923 5.72880 5.81981 5.92995 5.97861 6.09169 6.12441 6.16855 6.23990 6.35727 6.38637 6.43614 6.54580 6.89289 6.92603 7.53219 7.71158 8.23721 8.45233 9.55839 10.15178 10.49575 11.49084 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.003795 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.009713 B = 7376.017542 C = 8498.031016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.241 4.241 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.715 5.715 17 C 0.567 3.433 18 O -0.547 6.547 19 C -0.193 4.193 20 C -0.077 4.077 21 C -0.107 4.107 22 C -0.124 4.124 23 C -0.093 4.093 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.401 0.599 36 H 0.137 0.863 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.097 -2.021 -15.274 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.210 4.210 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.366 5.366 17 C 0.355 3.645 18 O -0.426 6.426 19 C -0.196 4.196 20 C -0.096 4.096 21 C -0.144 4.144 22 C -0.161 4.161 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.236 0.764 36 H 0.154 0.846 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.259 -1.277 -15.122 21.521 hybrid contribution 0.857 -0.690 0.639 1.272 sum -14.402 -1.968 -14.483 20.520 Atomic orbital electron populations 1.22168 0.95474 1.01956 1.02382 1.21054 0.93598 0.97852 0.83917 0.89319 1.21850 0.96897 1.00741 0.96609 1.21732 0.93644 1.01474 0.99499 1.20648 0.86183 0.96413 0.94213 1.42378 1.00219 1.66291 1.28979 1.19207 0.89468 1.27220 1.01301 0.91273 1.24748 0.96431 1.01224 0.98636 1.69660 1.07249 1.46981 1.34407 0.86260 0.78982 0.78957 0.81947 1.21276 1.21662 1.21270 1.45999 1.66922 1.14123 1.09553 1.17958 0.77274 0.86235 0.83037 1.90777 1.50885 1.15654 1.85278 1.21934 1.06146 0.97041 0.94430 1.24103 0.92742 0.99347 0.93437 1.21477 1.00773 0.94686 0.97441 1.22429 1.00254 0.98322 0.95108 1.21257 1.00018 0.92492 0.99260 0.92560 0.91532 0.92370 0.90251 0.91447 0.92074 0.91956 0.96510 0.96595 0.78331 0.93479 0.76423 0.84563 0.90216 0.89788 0.90535 0.90534 0.90374 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.14 1.70 2.57 -67.93 -0.17 1.53 16 3 H 0.09 1.27 7.58 -51.93 -0.39 0.87 16 4 C -0.12 -1.50 4.75 -26.73 -0.13 -1.63 16 5 C -0.13 -2.04 5.22 -26.73 -0.14 -2.18 16 6 C 0.15 3.12 6.26 -4.04 -0.03 3.09 16 7 N -0.73 -19.25 5.60 -59.91 -0.34 -19.59 16 8 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 9 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 10 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 11 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 12 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 16 N -0.72 -8.53 4.52 -54.99 -0.25 -8.78 16 17 C 0.57 7.83 7.76 -12.66 -0.10 7.73 16 18 O -0.55 -9.46 16.44 5.26 0.09 -9.37 16 19 C -0.19 -2.17 6.11 -102.68 -0.63 -2.80 16 20 C -0.08 -0.78 10.45 -35.95 -0.38 -1.15 16 21 C -0.11 -0.79 6.80 -26.85 -0.18 -0.98 16 22 C -0.12 -0.94 7.16 -25.09 -0.18 -1.12 16 23 C -0.09 -0.82 6.02 -26.86 -0.16 -0.98 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.01 7.75 -51.93 -0.40 0.61 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.40 4.05 7.61 -40.82 -0.31 3.74 16 36 H 0.14 1.40 8.04 -52.49 -0.42 0.97 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -33.64 347.02 -8.84 -42.48 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.29 Total: 7.89 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -1.99 Total: -7.40 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.14 Total: -56.48 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.64 -8.84 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330784475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.586 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds