Wall clock time and date at job start Mon Mar 30 2020 19:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46666 * 2 1 4 4 C 1.53001 * 109.47170 * 120.00343 * 2 1 3 5 5 C 1.53005 * 109.46706 * 185.00007 * 4 2 1 6 6 C 1.53001 * 109.46706 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47146 * 180.02562 * 6 5 4 8 8 C 1.36939 * 120.00014 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00029 * 0.02562 * 8 7 6 10 10 C 1.38810 * 119.99799 * 179.97438 * 8 7 6 11 11 N 1.31622 * 120.00012 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99908 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47246 * 60.00321 * 12 10 8 14 14 H 1.48499 * 109.47284 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47201 * 300.00272 * 12 10 8 16 16 N 1.46499 * 109.47188 * 240.00586 * 2 1 3 17 17 C 1.34778 * 120.00494 * 84.99718 * 16 2 1 18 18 O 1.21617 * 119.99507 * 359.97438 * 17 16 2 19 19 C 1.47101 * 120.00193 * 180.02562 * 17 16 2 20 20 C 1.32874 * 124.76773 * 179.97438 * 19 17 16 21 21 C 1.51119 * 110.80017 * 179.97438 * 20 19 17 22 22 C 1.54574 * 104.83668 * 343.43160 * 21 20 19 23 23 C 1.51112 * 124.62052 * 359.97438 * 19 17 16 24 24 H 1.09003 * 109.47193 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47640 * 299.99664 * 1 2 3 26 26 H 1.08999 * 109.47552 * 60.00032 * 1 2 3 27 27 H 1.09004 * 109.47015 * 304.99822 * 4 2 1 28 28 H 1.08995 * 109.47330 * 65.00150 * 4 2 1 29 29 H 1.08995 * 109.47167 * 299.99881 * 5 4 2 30 30 H 1.09000 * 109.46771 * 60.00309 * 5 4 2 31 31 H 1.09004 * 109.47015 * 299.99815 * 6 5 4 32 32 H 1.09002 * 109.47161 * 59.99832 * 6 5 4 33 33 H 0.96995 * 119.99943 * 359.97438 * 7 6 5 34 34 H 0.97006 * 119.99751 * 179.97438 * 11 10 8 35 35 H 0.97008 * 119.99678 * 265.00279 * 16 2 1 36 36 H 1.07998 * 124.58369 * 0.02562 * 20 19 17 37 37 H 1.09003 * 110.36283 * 224.59007 * 21 20 19 38 38 H 1.09000 * 110.45170 * 102.32072 * 21 20 19 39 39 H 1.08994 * 110.98601 * 266.91919 * 22 21 20 40 40 H 1.09005 * 110.98070 * 143.12853 * 22 21 20 41 41 H 1.09002 * 110.36615 * 77.73535 * 23 19 17 42 42 H 1.08995 * 110.36540 * 315.52472 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3135 6 6 4.0748 -1.3341 2.5631 7 7 5.5348 -1.2302 2.6251 8 6 6.2185 -1.8035 3.6639 9 1 5.6814 -2.3326 4.4373 10 6 7.6019 -1.7055 3.7224 11 7 8.2564 -1.0611 2.7796 12 14 8.5347 -2.4881 5.1390 13 1 8.2778 -3.9507 5.1529 14 1 9.9893 -2.2422 4.9699 15 1 8.0783 -1.8932 6.4209 16 7 2.0183 -0.6905 -1.1962 17 6 2.1470 -0.0181 -2.3572 18 8 1.8573 1.1618 -2.4118 19 6 2.6369 -0.7116 -3.5584 20 6 2.7992 -0.1431 -4.7484 21 6 3.3182 -1.1437 -5.7549 22 6 3.8539 -2.3185 -4.9051 23 6 3.0252 -2.1711 -3.6088 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2055 29 1 3.9994 -1.0727 0.4258 30 1 3.8531 0.4370 1.3573 31 1 3.6402 -0.8742 3.4506 32 1 3.7864 -2.3844 2.5198 33 1 6.0171 -0.7553 1.9304 34 1 9.2232 -0.9923 2.8207 35 1 2.2490 -1.6317 -1.1527 36 1 2.5895 0.8937 -4.9661 37 1 4.1224 -0.7051 -6.3457 38 1 2.5119 -1.4827 -6.4054 39 1 4.9185 -2.2004 -4.7030 40 1 3.6539 -3.2740 -5.3900 41 1 2.1354 -2.7991 -3.6542 42 1 3.6295 -2.4330 -2.7403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330784475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:42 Heat of formation + Delta-G solvation = -56.529993 kcal Electronic energy + Delta-G solvation = -19873.240785 eV Core-core repulsion = 16851.804443 eV Total energy + Delta-G solvation = -3021.436342 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12908 -38.91403 -37.83192 -36.50624 -34.20083 -32.67996 -31.02810 -30.04636 -29.10256 -27.24374 -24.94300 -23.70082 -22.38167 -21.99713 -21.37986 -19.78137 -19.11981 -18.13414 -17.43560 -16.67511 -16.50400 -15.95841 -15.83182 -15.53629 -15.33624 -15.11357 -14.48969 -13.89948 -13.84423 -13.57656 -13.46637 -13.19503 -13.06022 -12.88256 -12.73563 -12.60417 -12.41268 -12.28459 -12.11724 -12.05410 -12.00631 -11.86635 -11.73214 -11.51359 -10.96898 -10.92737 -10.18228 -9.80643 -9.01610 -7.95954 -5.25822 0.37515 1.46853 1.50596 1.56848 2.23472 2.29507 2.55824 3.37576 3.52498 3.61931 3.67267 3.95812 4.08720 4.10818 4.20385 4.27868 4.30832 4.38779 4.57045 4.66327 4.77543 4.80912 4.81106 4.84697 4.89671 4.91978 4.96815 4.99252 5.10433 5.17122 5.28954 5.34582 5.35800 5.38846 5.41458 5.49221 5.54789 5.58460 6.26163 6.56119 7.22314 7.31632 8.08546 8.30917 9.27710 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.003795 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.009713 B = 7376.017542 C = 8498.031016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.113 4.113 6 C 0.151 3.849 7 N -0.751 5.751 8 C -0.251 4.251 9 H 0.078 0.922 10 C -0.077 4.077 11 N -0.972 5.972 12 Si 0.977 3.023 13 H -0.275 1.275 14 H -0.295 1.295 15 H -0.277 1.277 16 N -0.707 5.707 17 C 0.559 3.441 18 O -0.593 6.593 19 C -0.217 4.217 20 C -0.073 4.073 21 C -0.102 4.102 22 C -0.122 4.122 23 C -0.089 4.089 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.020 0.980 32 H 0.027 0.973 33 H 0.371 0.629 34 H 0.252 0.748 35 H 0.411 0.589 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.119 -3.881 -15.249 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.025 3.975 7 N -0.394 5.394 8 C -0.382 4.382 9 H 0.095 0.905 10 C -0.269 4.269 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.200 1.200 14 H -0.221 1.221 15 H -0.203 1.203 16 N -0.358 5.358 17 C 0.349 3.651 18 O -0.475 6.475 19 C -0.220 4.220 20 C -0.093 4.093 21 C -0.139 4.139 22 C -0.160 4.160 23 C -0.126 4.126 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.202 0.798 34 H 0.060 0.940 35 H 0.248 0.752 36 H 0.146 0.854 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.328 -3.181 -15.074 22.449 hybrid contribution 1.121 -0.073 0.607 1.277 sum -15.207 -3.254 -14.467 21.240 Atomic orbital electron populations 1.22087 0.93657 1.03081 1.02300 1.21006 0.94934 0.96484 0.83940 0.92007 1.21752 0.93544 1.02269 0.97095 1.21590 0.96520 0.99632 0.97353 1.20851 0.83179 0.97423 0.96093 1.42654 1.02554 1.66012 1.28158 1.19661 0.90092 1.26643 1.01837 0.90458 1.25632 0.97481 1.02339 1.01444 1.69831 1.07125 1.48795 1.36516 0.85165 0.77027 0.78445 0.78846 1.20041 1.22104 1.20346 1.45973 1.66169 1.14531 1.09090 1.18449 0.76684 0.85868 0.84137 1.90743 1.53140 1.17594 1.86069 1.22034 1.07621 0.98617 0.93740 1.24408 0.91271 0.99589 0.94017 1.21533 1.01616 0.93784 0.96918 1.22466 0.99556 0.99399 0.94554 1.21279 1.00757 0.90833 0.99755 0.90755 0.90125 0.93974 0.88928 0.89241 0.92563 0.93749 0.96190 0.95520 0.79759 0.93972 0.75194 0.85448 0.89102 0.87755 0.91307 0.88391 0.88784 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.48 71.98 0.68 -2.30 16 2 C 0.14 3.33 2.57 44.99 0.12 3.45 16 3 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 4 C -0.11 -2.45 4.75 30.60 0.15 -2.30 16 5 C -0.11 -3.62 5.22 30.60 0.16 -3.46 16 6 C 0.15 6.00 6.26 86.38 0.54 6.54 16 7 N -0.75 -39.52 5.60 -343.44 -1.92 -41.45 16 8 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 9 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 10 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 11 N -0.97 -60.82 13.06 21.65 0.28 -60.53 16 12 Si 0.98 46.46 29.55 68.60 2.03 48.49 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 16 N -0.71 -16.61 4.52 -446.14 -2.02 -18.63 16 17 C 0.56 15.78 7.76 86.57 0.67 16.45 16 18 O -0.59 -21.45 16.44 -4.08 -0.07 -21.52 16 19 C -0.22 -4.85 6.11 -18.58 -0.11 -4.96 16 20 C -0.07 -1.45 10.45 24.64 0.26 -1.19 16 21 C -0.10 -1.31 6.80 30.52 0.21 -1.10 16 22 C -0.12 -1.61 7.16 31.66 0.23 -1.38 16 23 C -0.09 -1.44 6.02 30.51 0.18 -1.25 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.84 7.75 -2.39 -0.02 1.83 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.37 20.95 7.67 -92.71 -0.71 20.24 16 34 H 0.25 15.23 8.31 -92.70 -0.77 14.45 16 35 H 0.41 7.83 7.61 -92.70 -0.71 7.13 16 36 H 0.13 2.69 8.04 -2.91 -0.02 2.67 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.22 7.83 -2.39 -0.02 1.20 16 Total: -1.00 -73.25 347.02 2.27 -70.99 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.42 Total: 31.67 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 4.38 Total: -9.02 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -3.66 Total: -120.61 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.07 Total: -21.52 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -73.25 2.27 -70.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330784475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.457 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds