Wall clock time and date at job start Mon Mar 30 2020 19:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47123 * 2 1 4 4 C 1.50697 * 109.46909 * 239.99740 * 2 1 3 5 5 H 1.07998 * 120.00562 * 239.99998 * 4 2 1 6 6 C 1.37874 * 119.99821 * 60.00307 * 4 2 1 7 7 N 1.31516 * 120.00220 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00002 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47236 * 90.00051 * 8 6 4 10 10 H 1.48505 * 109.47150 * 209.99971 * 8 6 4 11 11 H 1.48502 * 109.47326 * 329.99688 * 8 6 4 12 12 C 1.50700 * 109.47152 * 120.00292 * 2 1 3 13 13 O 1.21279 * 120.00632 * 119.99846 * 12 2 1 14 14 N 1.34775 * 119.99793 * 299.99637 * 12 2 1 15 15 C 1.46504 * 120.00077 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.43889 * 36.10445 * 15 14 12 17 17 C 1.55938 * 110.49285 * 273.54765 * 15 14 12 18 18 C 1.56397 * 105.86000 * 248.67626 * 17 15 14 19 19 C 1.51212 * 101.50964 * 25.02400 * 18 17 15 20 20 H 1.08994 * 109.72281 * 69.26709 * 19 18 17 21 21 C 1.50362 * 125.47824 * 203.91504 * 19 18 17 22 22 N 1.49622 * 104.82846 * 144.40448 * 21 19 18 23 23 C 1.46906 * 111.00000 * 114.65848 * 22 21 19 24 24 C 1.50100 * 107.75297 * 352.93030 * 22 21 19 25 25 C 1.50305 * 110.60805 * 158.74029 * 15 14 12 26 26 H 1.09002 * 109.99430 * 198.36002 * 25 15 14 27 27 H 1.09004 * 109.47115 * 299.99589 * 1 2 3 28 28 H 1.08995 * 109.47459 * 59.99621 * 1 2 3 29 29 H 1.09003 * 109.47400 * 180.02562 * 1 2 3 30 30 H 0.97000 * 119.99991 * 180.02562 * 7 6 4 31 31 H 0.96998 * 120.00045 * 0.02562 * 14 12 2 32 32 H 1.09002 * 110.18526 * 7.79767 * 17 15 14 33 33 H 1.09003 * 110.18512 * 129.56035 * 17 15 14 34 34 H 1.09005 * 111.00023 * 143.12438 * 18 17 15 35 35 H 1.09001 * 111.00468 * 266.96169 * 18 17 15 36 36 H 1.08997 * 110.36719 * 25.56470 * 21 19 18 37 37 H 1.09009 * 110.45797 * 263.28807 * 21 19 18 38 38 H 1.08998 * 109.47088 * 300.18877 * 23 22 21 39 39 H 1.09003 * 109.46719 * 60.18733 * 23 22 21 40 40 H 1.08996 * 109.46888 * 180.18122 * 23 22 21 41 41 H 1.09004 * 110.84854 * 216.69636 * 24 22 21 42 42 H 1.08996 * 110.85569 * 93.06411 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4826 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7567 -3.7120 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4545 15 6 2.1956 -0.9403 3.6507 16 1 3.2030 -1.3221 3.4850 17 6 1.2302 -2.0999 4.0446 18 6 0.5567 -1.6586 5.3853 19 6 0.6647 -0.1530 5.2960 20 1 0.0037 0.2173 4.5125 21 6 0.6597 0.7931 6.4646 22 7 1.6028 1.8875 6.0753 23 6 0.8931 3.1648 5.9232 24 6 2.2662 1.4845 4.7906 25 6 2.1702 -0.0210 4.8396 26 1 2.8172 -0.4103 5.6256 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.7081 1.1608 -3.4844 31 1 1.1489 0.5385 2.5435 32 1 0.4742 -2.2389 3.2717 33 1 1.7913 -3.0229 4.1915 34 1 -0.4857 -1.9752 5.4215 35 1 1.1091 -2.0401 6.2441 36 1 1.0145 0.2882 7.3630 37 1 -0.3411 1.1942 6.6258 38 1 0.1298 3.0666 5.1514 39 1 0.4216 3.4332 6.8685 40 1 1.6015 3.9421 5.6369 41 1 3.3075 1.8065 4.7740 42 1 1.7229 1.8801 3.9325 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339318799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:25:49 Heat of formation + Delta-G solvation = -26.497494 kcal Electronic energy + Delta-G solvation = -21224.117702 eV Core-core repulsion = 18203.983667 eV Total energy + Delta-G solvation = -3020.134035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80849 -38.43824 -35.84749 -33.71017 -32.94807 -30.58351 -30.05162 -29.13161 -25.92287 -25.13423 -25.08704 -22.63971 -21.34503 -20.26317 -19.76370 -19.20477 -16.53735 -16.35170 -15.90082 -15.32142 -15.16733 -14.68912 -14.33480 -13.99718 -13.91949 -13.66036 -13.20936 -12.89097 -12.73264 -12.53109 -12.04888 -11.71305 -11.60204 -11.36440 -11.29063 -11.01926 -10.96030 -10.91069 -10.73170 -10.65693 -10.62688 -10.25769 -10.09087 -9.93504 -8.96561 -8.58110 -8.53540 -8.41745 -8.29864 -6.02184 -4.05079 3.34394 3.40038 3.47099 3.71185 3.75969 3.86354 3.97761 4.48589 4.60592 4.77483 4.96585 5.09770 5.18105 5.24437 5.30767 5.33469 5.37144 5.44909 5.55324 5.60039 5.67606 5.71815 5.82644 5.88215 5.95889 6.01071 6.11386 6.17302 6.34431 6.44701 6.60438 6.61509 6.82277 6.83576 6.93317 7.16612 7.48297 7.75885 8.00599 8.16575 8.47544 9.04238 9.28116 9.60642 11.05476 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029569 B = 0.004717 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.706451 B = 5934.473127 C = 6386.152591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.545 6.545 14 N -0.739 5.739 15 C 0.161 3.839 16 H 0.088 0.912 17 C -0.132 4.132 18 C -0.100 4.100 19 C -0.137 4.137 20 H 0.074 0.926 21 C 0.055 3.945 22 N -0.531 5.531 23 C 0.016 3.984 24 C 0.056 3.944 25 C -0.121 4.121 26 H 0.091 0.909 27 H 0.009 0.991 28 H 0.093 0.907 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.392 0.608 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 2.106 17.789 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.421 6.421 14 N -0.393 5.393 15 C 0.055 3.945 16 H 0.106 0.894 17 C -0.171 4.171 18 C -0.139 4.139 19 C -0.156 4.156 20 H 0.092 0.908 21 C -0.072 4.072 22 N -0.255 5.255 23 C -0.132 4.132 24 C -0.071 4.071 25 C -0.141 4.141 26 H 0.110 0.890 27 H 0.028 0.972 28 H 0.111 0.889 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.226 0.774 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.795 1.598 17.949 18.109 hybrid contribution -0.722 -0.055 -1.418 1.592 sum -2.517 1.543 16.531 16.793 Atomic orbital electron populations 1.21731 0.96680 0.99715 1.00752 1.18865 0.94025 0.96809 0.89554 0.93164 1.21147 1.30853 1.12734 0.89001 0.90792 1.24953 0.95161 0.95060 0.99117 1.69872 1.37232 1.23144 1.23481 0.86458 0.79469 0.79233 0.82085 1.20705 1.21318 1.19736 1.21948 0.78315 0.84262 0.84504 1.90525 1.37929 1.26860 1.86747 1.46366 1.55236 1.32300 1.05383 1.20679 0.98361 0.91627 0.83817 0.89431 1.23451 0.98811 0.98342 0.96491 1.21785 1.00676 0.93420 0.97973 1.22557 0.97725 0.96403 0.98938 0.90780 1.22147 0.95292 0.92094 0.97715 1.65167 1.28249 1.02514 1.29607 1.22540 0.97740 0.92145 1.00823 1.22323 1.00221 0.94023 0.90550 1.22392 0.97617 0.95250 0.98832 0.89025 0.97196 0.88876 0.95056 0.93012 0.77397 0.90812 0.91182 0.91606 0.91269 0.90265 0.92173 0.95302 0.91480 0.91246 0.89676 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.87 37.16 0.33 -2.68 16 2 C 0.03 0.71 2.64 -92.93 -0.25 0.47 16 3 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -14.21 8.37 -34.44 -0.29 -14.50 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 12 C 0.52 11.76 7.15 -10.99 -0.08 11.68 16 13 O -0.54 -14.13 15.17 5.56 0.08 -14.05 16 14 N -0.74 -12.68 4.70 -53.58 -0.25 -12.93 16 15 C 0.16 2.37 3.09 -67.70 -0.21 2.16 16 16 H 0.09 1.45 7.67 -51.93 -0.40 1.05 16 17 C -0.13 -1.77 6.73 -23.33 -0.16 -1.92 16 18 C -0.10 -1.04 6.73 -25.81 -0.17 -1.21 16 19 C -0.14 -1.46 2.73 -90.17 -0.25 -1.70 16 20 H 0.07 0.88 7.72 -51.93 -0.40 0.48 16 21 C 0.05 0.53 6.73 -3.62 -0.02 0.51 16 22 N -0.53 -5.70 5.57 -240.57 -1.34 -7.04 16 23 C 0.02 0.15 9.24 60.07 0.55 0.71 16 24 C 0.06 0.64 6.28 -3.07 -0.02 0.63 16 25 C -0.12 -1.43 2.60 -90.33 -0.23 -1.66 16 26 H 0.09 1.04 8.13 -51.93 -0.42 0.62 16 27 H 0.01 0.18 7.56 -51.93 -0.39 -0.21 16 28 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 6.07 6.37 -40.82 -0.26 5.81 16 32 H 0.07 1.14 7.98 -51.93 -0.41 0.72 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.54 7.65 -51.92 -0.40 0.14 16 38 H 0.03 0.27 8.11 -51.93 -0.42 -0.15 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.66 6.60 -51.93 -0.34 0.32 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -30.43 326.28 -8.93 -39.36 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.06 Total: 3.52 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.89 Total: -6.03 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.97 Total: -44.63 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.08 Total: -14.05 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.43 -8.93 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339318799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.864 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds