Wall clock time and date at job start Mon Mar 30 2020 19:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47124 * 2 1 4 4 C 1.50702 * 109.46825 * 119.99933 * 2 1 3 5 5 H 1.08003 * 119.99841 * 120.00416 * 4 2 1 6 6 C 1.37880 * 120.00353 * 299.99405 * 4 2 1 7 7 N 1.31511 * 120.00335 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99709 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47385 * 89.99298 * 8 6 4 10 10 H 1.48502 * 109.47029 * 209.99514 * 8 6 4 11 11 H 1.48505 * 109.47286 * 329.99410 * 8 6 4 12 12 C 1.50693 * 109.47113 * 239.99773 * 2 1 3 13 13 O 1.21287 * 120.00211 * 240.00178 * 12 2 1 14 14 N 1.34773 * 119.99916 * 60.00323 * 12 2 1 15 15 C 1.46508 * 120.00084 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47014 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.43105 * 59.93059 * 16 15 14 18 18 C 1.53139 * 109.42571 * 179.82240 * 16 15 14 19 19 C 1.53705 * 108.88762 * 66.01297 * 18 16 15 20 20 H 1.09000 * 112.12719 * 188.37351 * 19 18 16 21 21 C 1.54608 * 107.80767 * 312.37890 * 19 18 16 22 22 C 1.54288 * 104.84368 * 88.56321 * 21 19 18 23 23 C 1.54600 * 104.84101 * 359.97438 * 22 21 19 24 24 H 1.08998 * 112.22371 * 147.48631 * 23 22 21 25 25 C 1.53137 * 109.38472 * 300.05882 * 16 15 14 26 26 N 1.48713 * 107.24382 * 64.08553 * 19 18 16 27 27 H 1.09007 * 109.46894 * 299.99949 * 1 2 3 28 28 H 1.08996 * 109.46994 * 60.00023 * 1 2 3 29 29 H 1.08999 * 109.47124 * 179.97438 * 1 2 3 30 30 H 0.96993 * 120.00161 * 180.02562 * 7 6 4 31 31 H 0.96995 * 120.00189 * 359.97438 * 14 12 2 32 32 H 1.08999 * 109.47247 * 59.99720 * 15 14 12 33 33 H 1.09003 * 109.46953 * 299.99724 * 15 14 12 34 34 H 1.09000 * 109.56821 * 306.18652 * 18 16 15 35 35 H 1.09000 * 109.56700 * 185.83148 * 18 16 15 36 36 H 1.09003 * 110.36615 * 329.72301 * 21 19 18 37 37 H 1.08998 * 110.45752 * 207.45358 * 21 19 18 38 38 H 1.08998 * 110.36607 * 241.15202 * 22 21 19 39 39 H 1.09005 * 110.45906 * 118.88935 * 22 21 19 40 40 H 1.09005 * 109.56455 * 174.14599 * 25 16 15 41 41 H 1.08992 * 109.57105 * 53.79012 * 25 16 15 42 42 H 1.00905 * 111.00436 * 168.34180 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6249 1.2792 2.6542 9 1 -0.8027 0.8730 2.6997 10 1 0.9761 1.9952 3.9069 11 1 0.8473 2.1767 1.4921 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6966 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9410 -3.6507 16 6 1.6843 -0.2200 -4.8999 17 1 2.0470 0.8079 -4.8990 18 6 2.1984 -0.9404 -6.1496 19 6 1.5616 -2.3378 -6.2157 20 1 1.9998 -2.9519 -7.0025 21 6 1.7024 -2.9881 -4.8201 22 6 0.4423 -2.5442 -4.0483 23 6 -0.3450 -1.6655 -5.0474 24 1 -1.4228 -1.7451 -4.9061 25 6 0.1529 -0.2197 -4.8966 26 7 0.0964 -2.1470 -6.3837 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9026 -0.5284 4.4376 31 1 1.1489 0.5385 -2.5435 32 1 1.8309 -1.9685 -3.6505 33 1 3.2847 -0.9414 -3.6508 34 1 3.2830 -1.0356 -6.0959 35 1 1.9237 -0.3717 -7.0379 36 1 2.6006 -2.6244 -4.3210 37 1 1.7310 -4.0742 -4.9070 38 1 0.7209 -1.9624 -3.1697 39 1 -0.1505 -3.4109 -3.7559 40 1 -0.2138 0.3815 -5.7286 41 1 -0.2101 0.1952 -3.9564 42 1 -0.3565 -3.0165 -6.6229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340913480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:19 Heat of formation + Delta-G solvation = 57.758887 kcal Electronic energy + Delta-G solvation = -21805.948032 eV Core-core repulsion = 18789.467628 eV Total energy + Delta-G solvation = -3016.480404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.10736 -38.61348 -34.68794 -33.78855 -32.28796 -31.61278 -31.36361 -30.61790 -26.14414 -25.11620 -24.26498 -22.82947 -21.41576 -20.46464 -19.66955 -18.75945 -17.61162 -16.72060 -16.53160 -15.42413 -15.11119 -14.58261 -14.29844 -13.83864 -13.76142 -13.29009 -13.18909 -12.96743 -12.74541 -12.65757 -12.41500 -12.29324 -11.88926 -11.65447 -11.39632 -11.03268 -10.94196 -10.69625 -10.52450 -10.43881 -10.29615 -10.24834 -9.62297 -9.54045 -9.07537 -8.89230 -8.64469 -8.55663 -8.13337 -6.03397 -4.03216 3.23910 3.31791 3.37186 3.64322 3.88327 3.97900 4.39235 4.50966 4.54220 4.75048 4.94349 4.99225 5.02192 5.14803 5.20646 5.26204 5.26774 5.49448 5.53620 5.63174 5.80554 5.84644 5.88715 5.93849 5.99949 6.05122 6.07954 6.12433 6.16117 6.19964 6.29121 6.38334 6.47342 6.59346 6.75096 7.08452 7.17854 7.18364 7.57877 8.19444 8.58563 9.13703 9.19943 9.56143 11.09692 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036540 B = 0.005064 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.106732 B = 5527.878879 C = 5731.730970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.007 4.007 3 H 0.050 0.950 4 C -0.504 4.504 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.525 3.475 13 O -0.534 6.534 14 N -0.745 5.745 15 C 0.002 3.998 16 C -0.093 4.093 17 H 0.070 0.930 18 C -0.100 4.100 19 C 0.067 3.933 20 H 0.092 0.908 21 C -0.185 4.185 22 C -0.192 4.192 23 C 0.070 3.930 24 H 0.092 0.908 25 C -0.104 4.104 26 N -0.656 5.656 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.264 0.736 31 H 0.390 0.610 32 H 0.179 0.821 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.124 0.876 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 0.771 -20.658 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.542 4.542 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.313 3.687 13 O -0.409 6.409 14 N -0.400 5.400 15 C -0.118 4.118 16 C -0.112 4.112 17 H 0.089 0.911 18 C -0.138 4.138 19 C -0.043 4.043 20 H 0.110 0.890 21 C -0.223 4.223 22 C -0.230 4.230 23 C -0.040 4.040 24 H 0.110 0.890 25 C -0.142 4.142 26 N -0.283 5.283 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.223 0.777 32 H 0.194 0.806 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.718 0.706 -20.753 21.294 hybrid contribution -0.746 0.557 0.816 1.238 sum -5.464 1.263 -19.937 20.711 Atomic orbital electron populations 1.22111 0.97444 1.01417 0.99161 1.19313 0.93130 0.97518 0.92875 0.93225 1.20953 1.31958 1.14038 0.87249 0.88896 1.24987 0.95868 0.96547 0.95788 1.69880 1.45583 1.40212 0.97846 0.86914 0.80698 0.83887 0.77025 1.20557 1.22354 1.19311 1.21215 0.79016 0.84414 0.84023 1.90572 1.37254 1.26451 1.86609 1.46465 1.55052 1.32505 1.05937 1.24812 0.99122 1.04299 0.83598 1.21295 0.95792 0.99629 0.94504 0.91132 1.21660 0.99307 0.95173 0.97647 1.22866 0.89553 0.96271 0.95617 0.88975 1.23804 1.00302 1.00860 0.97345 1.23889 0.96268 1.00984 1.01878 1.22811 0.98727 0.95176 0.87285 0.89040 1.21706 0.94879 0.95816 1.01775 1.63760 1.03957 1.32804 1.27778 0.93355 0.94908 0.92409 0.92610 0.77655 0.80594 0.93298 0.91495 0.90872 0.87032 0.91761 0.85887 0.91951 0.91123 0.91402 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.57 37.16 0.32 -2.62 16 2 C -0.01 -0.16 2.23 -92.93 -0.21 -0.36 16 3 H 0.05 1.14 7.20 -51.93 -0.37 0.77 16 4 C -0.50 -14.66 8.96 -34.44 -0.31 -14.97 16 5 H 0.09 3.08 7.00 -52.48 -0.37 2.71 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 8 Si 0.88 21.47 24.37 -169.99 -4.14 17.33 16 9 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 10 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 12 C 0.52 11.42 6.89 -10.99 -0.08 11.35 16 13 O -0.53 -13.71 15.46 5.55 0.09 -13.63 16 14 N -0.74 -12.03 4.27 -60.29 -0.26 -12.29 16 15 C 0.00 0.03 2.68 -4.04 -0.01 0.02 16 16 C -0.09 -1.01 2.77 -90.48 -0.25 -1.27 16 17 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.10 -0.96 5.37 -26.29 -0.14 -1.10 16 19 C 0.07 0.63 4.54 -65.50 -0.30 0.33 16 20 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.18 -2.03 5.71 -25.21 -0.14 -2.18 16 22 C -0.19 -2.30 5.71 -25.22 -0.14 -2.44 16 23 C 0.07 0.72 4.53 -65.51 -0.30 0.42 16 24 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 25 C -0.10 -1.07 5.27 -26.32 -0.14 -1.21 16 26 N -0.66 -6.17 7.11 -94.70 -0.67 -6.84 16 27 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 28 H 0.03 0.52 7.56 -51.93 -0.39 0.13 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 31 H 0.39 5.38 6.72 -40.82 -0.27 5.11 16 32 H 0.18 2.49 1.11 -167.97 -0.19 2.31 16 33 H 0.05 0.76 8.00 -51.93 -0.42 0.34 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.40 4.83 -51.93 -0.25 1.15 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.12 1.79 3.92 -51.93 -0.20 1.59 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.70 6.71 -51.93 -0.35 0.36 16 42 H 0.33 2.72 8.93 -39.29 -0.35 2.37 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -32.88 301.18 -7.79 -40.66 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.32 Total: 9.46 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.79 Total: -12.10 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.16 Total: -46.26 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.88 -7.79 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340913480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.422 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds