Wall clock time and date at job start Mon Mar 30 2020 19:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47124 * 2 1 4 4 C 1.50702 * 109.46825 * 119.99933 * 2 1 3 5 5 H 1.08003 * 119.99841 * 120.00416 * 4 2 1 6 6 C 1.37880 * 120.00353 * 299.99405 * 4 2 1 7 7 N 1.31511 * 120.00335 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99709 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47385 * 89.99298 * 8 6 4 10 10 H 1.48502 * 109.47029 * 209.99514 * 8 6 4 11 11 H 1.48505 * 109.47286 * 329.99410 * 8 6 4 12 12 C 1.50693 * 109.47113 * 239.99773 * 2 1 3 13 13 O 1.21287 * 120.00211 * 240.00178 * 12 2 1 14 14 N 1.34773 * 119.99916 * 60.00323 * 12 2 1 15 15 C 1.46508 * 120.00084 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47014 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.43105 * 59.93059 * 16 15 14 18 18 C 1.53139 * 109.42571 * 179.82240 * 16 15 14 19 19 C 1.53705 * 108.88762 * 66.01297 * 18 16 15 20 20 H 1.09000 * 112.12719 * 188.37351 * 19 18 16 21 21 C 1.54608 * 107.80767 * 312.37890 * 19 18 16 22 22 C 1.54288 * 104.84368 * 88.56321 * 21 19 18 23 23 C 1.54600 * 104.84101 * 359.97438 * 22 21 19 24 24 H 1.08998 * 112.22371 * 147.48631 * 23 22 21 25 25 C 1.53137 * 109.38472 * 300.05882 * 16 15 14 26 26 N 1.48713 * 107.24382 * 64.08553 * 19 18 16 27 27 H 1.09007 * 109.46894 * 299.99949 * 1 2 3 28 28 H 1.08996 * 109.46994 * 60.00023 * 1 2 3 29 29 H 1.08999 * 109.47124 * 179.97438 * 1 2 3 30 30 H 0.96993 * 120.00161 * 180.02562 * 7 6 4 31 31 H 0.96995 * 120.00189 * 359.97438 * 14 12 2 32 32 H 1.08999 * 109.47247 * 59.99720 * 15 14 12 33 33 H 1.09003 * 109.46953 * 299.99724 * 15 14 12 34 34 H 1.09000 * 109.56821 * 306.18652 * 18 16 15 35 35 H 1.09000 * 109.56700 * 185.83148 * 18 16 15 36 36 H 1.09003 * 110.36615 * 329.72301 * 21 19 18 37 37 H 1.08998 * 110.45752 * 207.45358 * 21 19 18 38 38 H 1.08998 * 110.36607 * 241.15202 * 22 21 19 39 39 H 1.09005 * 110.45906 * 118.88935 * 22 21 19 40 40 H 1.09005 * 109.56455 * 174.14599 * 25 16 15 41 41 H 1.08992 * 109.57105 * 53.79012 * 25 16 15 42 42 H 1.00905 * 111.00436 * 168.34180 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6249 1.2792 2.6542 9 1 -0.8027 0.8730 2.6997 10 1 0.9761 1.9952 3.9069 11 1 0.8473 2.1767 1.4921 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6966 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9410 -3.6507 16 6 1.6843 -0.2200 -4.8999 17 1 2.0470 0.8079 -4.8990 18 6 2.1984 -0.9404 -6.1496 19 6 1.5616 -2.3378 -6.2157 20 1 1.9998 -2.9519 -7.0025 21 6 1.7024 -2.9881 -4.8201 22 6 0.4423 -2.5442 -4.0483 23 6 -0.3450 -1.6655 -5.0474 24 1 -1.4228 -1.7451 -4.9061 25 6 0.1529 -0.2197 -4.8966 26 7 0.0964 -2.1470 -6.3837 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9026 -0.5284 4.4376 31 1 1.1489 0.5385 -2.5435 32 1 1.8309 -1.9685 -3.6505 33 1 3.2847 -0.9414 -3.6508 34 1 3.2830 -1.0356 -6.0959 35 1 1.9237 -0.3717 -7.0379 36 1 2.6006 -2.6244 -4.3210 37 1 1.7310 -4.0742 -4.9070 38 1 0.7209 -1.9624 -3.1697 39 1 -0.1505 -3.4109 -3.7559 40 1 -0.2138 0.3815 -5.7286 41 1 -0.2101 0.1952 -3.9564 42 1 -0.3565 -3.0165 -6.6229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340913480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:26:18 Heat of formation + Delta-G solvation = 31.899298 kcal Electronic energy + Delta-G solvation = -21807.069388 eV Core-core repulsion = 18789.467628 eV Total energy + Delta-G solvation = -3017.601760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.04779 -40.26241 -35.98299 -35.75564 -33.61659 -33.00788 -32.35008 -31.81419 -27.34073 -27.04798 -25.10422 -24.47144 -22.45977 -21.52406 -20.96392 -19.83125 -18.80557 -18.48822 -17.95336 -16.99100 -16.65961 -16.15859 -15.55975 -15.15062 -14.92022 -14.56633 -14.45553 -14.16981 -14.08372 -13.79539 -13.52478 -13.50723 -13.32215 -12.82864 -12.80180 -12.53647 -12.44302 -12.11997 -11.86564 -11.50389 -11.45200 -11.29264 -11.21247 -11.16865 -10.77553 -10.65082 -10.39231 -9.70031 -9.42298 -8.27041 -6.34579 1.32550 1.39399 1.50537 1.91295 2.34103 2.47007 3.06669 3.19881 3.66378 3.70372 3.89177 4.04303 4.09852 4.18395 4.20449 4.28279 4.37682 4.43173 4.45199 4.57787 4.62329 4.70343 4.74405 4.82992 4.89508 4.98017 5.03156 5.07492 5.12850 5.19683 5.24318 5.29965 5.33887 5.37746 5.45452 5.53883 5.69408 5.80375 6.27791 6.49637 6.70772 6.88792 7.27177 7.56167 8.90826 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036540 B = 0.005064 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.106732 B = 5527.878879 C = 5731.730970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.011 4.011 3 H 0.065 0.935 4 C -0.520 4.520 5 H 0.029 0.971 6 C 0.005 3.995 7 N -0.954 5.954 8 Si 0.961 3.039 9 H -0.259 1.259 10 H -0.300 1.300 11 H -0.232 1.232 12 C 0.524 3.476 13 O -0.587 6.587 14 N -0.717 5.717 15 C 0.000 4.000 16 C -0.086 4.086 17 H 0.078 0.922 18 C -0.098 4.098 19 C 0.073 3.927 20 H 0.110 0.890 21 C -0.185 4.185 22 C -0.194 4.194 23 C 0.074 3.926 24 H 0.103 0.897 25 C -0.103 4.103 26 N -0.651 5.651 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.267 0.733 31 H 0.406 0.594 32 H 0.180 0.820 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 3.191 -23.450 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 H 0.082 0.918 4 C -0.558 4.558 5 H 0.047 0.953 6 C -0.191 4.191 7 N -0.594 5.594 8 Si 0.785 3.215 9 H -0.185 1.185 10 H -0.228 1.228 11 H -0.155 1.155 12 C 0.312 3.688 13 O -0.467 6.467 14 N -0.371 5.371 15 C -0.120 4.120 16 C -0.105 4.105 17 H 0.096 0.904 18 C -0.137 4.137 19 C -0.038 4.038 20 H 0.128 0.872 21 C -0.224 4.224 22 C -0.233 4.233 23 C -0.036 4.036 24 H 0.121 0.879 25 C -0.140 4.140 26 N -0.279 5.279 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.243 0.757 32 H 0.196 0.804 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.145 3.154 -23.622 24.879 hybrid contribution 0.099 -0.324 1.651 1.685 sum -7.046 2.830 -21.971 23.246 Atomic orbital electron populations 1.22007 0.94384 1.01665 1.01496 1.19270 0.95514 0.97284 0.91195 0.91779 1.21112 1.31521 1.12772 0.90412 0.95310 1.26045 0.97514 1.00731 0.94816 1.70078 1.47758 1.42851 0.98713 0.85692 0.78835 0.79007 0.77927 1.18498 1.22814 1.15537 1.20985 0.78661 0.83776 0.85370 1.90558 1.39827 1.28819 1.87453 1.46163 1.53733 1.32339 1.04865 1.25068 0.97999 1.05013 0.83926 1.21269 0.96485 0.99621 0.93127 0.90412 1.21675 0.99529 0.95236 0.97233 1.22898 0.89817 0.96235 0.94819 0.87179 1.23751 0.99002 1.01294 0.98329 1.23845 0.96952 1.00976 1.01516 1.22823 0.99078 0.94769 0.86962 0.87891 1.21724 0.93984 0.95946 1.02396 1.63758 1.03796 1.33414 1.26891 0.93687 0.89629 0.93428 0.92435 0.75742 0.80422 0.95274 0.91288 0.89648 0.89051 0.91358 0.88578 0.92323 0.89833 0.91260 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 8.57 71.98 0.62 -4.63 16 2 C -0.01 -0.51 2.23 -12.29 -0.03 -0.53 16 3 H 0.06 2.79 7.20 -2.39 -0.02 2.78 16 4 C -0.52 -31.51 8.96 25.60 0.23 -31.28 16 5 H 0.03 2.06 7.00 -2.91 -0.02 2.04 16 6 C 0.01 0.30 5.45 84.66 0.46 0.76 16 7 N -0.95 -61.91 13.96 21.45 0.30 -61.61 16 8 Si 0.96 43.51 24.37 68.60 1.67 45.18 16 9 H -0.26 -10.92 6.87 99.48 0.68 -10.24 16 10 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.23 -9.13 6.53 99.48 0.65 -8.48 16 12 C 0.52 23.05 6.89 87.66 0.60 23.66 16 13 O -0.59 -31.86 15.46 -3.05 -0.05 -31.91 16 14 N -0.72 -22.25 4.27 -463.05 -1.98 -24.22 16 15 C 0.00 -0.01 2.68 86.38 0.23 0.22 16 16 C -0.09 -1.65 2.77 -10.70 -0.03 -1.68 16 17 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 18 C -0.10 -1.63 5.37 30.88 0.17 -1.46 16 19 C 0.07 1.18 4.54 45.35 0.21 1.38 16 20 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 21 C -0.19 -3.92 5.71 31.58 0.18 -3.74 16 22 C -0.19 -4.44 5.71 31.58 0.18 -4.26 16 23 C 0.07 1.30 4.53 45.32 0.21 1.51 16 24 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 25 C -0.10 -1.76 5.27 30.86 0.16 -1.59 16 26 N -0.65 -10.14 7.11 -453.52 -3.22 -13.37 16 27 H 0.04 1.75 3.27 -2.38 -0.01 1.74 16 28 H 0.08 2.33 7.56 -2.39 -0.02 2.31 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 31 H 0.41 9.90 6.72 -92.71 -0.62 9.28 16 32 H 0.18 5.03 1.11 -111.39 -0.12 4.90 16 33 H 0.03 0.92 8.00 -2.39 -0.02 0.90 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 2.33 4.83 -2.39 -0.01 2.32 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 2.75 3.92 -2.39 -0.01 2.74 16 39 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.07 1.16 6.71 -2.39 -0.02 1.14 16 42 H 0.34 4.51 8.93 -89.69 -0.80 3.70 16 Total: -1.00 -77.02 301.18 -0.66 -77.68 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -0.57 Total: 29.90 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 3.19 Total: -21.65 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -4.90 Total: -99.20 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.05 Total: -31.91 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.67 Total: 45.18 kcal Total: -77.02 -0.66 -77.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340913480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.575 kcal (2) G-P(sol) polarization free energy of solvation -77.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds